data_4ISC # _entry.id 4ISC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ISC RCSB RCSB077147 WWPDB D_1000077147 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id MCSG-APC102469 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ISC _pdbx_database_status.recvd_initial_deposition_date 2013-01-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippova, E.V.' 1 'Wawrzak, Z.' 2 'Minasov, G.' 3 'Shuvalova, L.' 4 'Kiryukhina, O.' 5 'Clancy, S.' 6 'Joachimiak, A.' 7 'Anderson, W.F.' 8 'Midwest Center for Structural Genomics (MCSG)' 9 # _citation.id primary _citation.title 'Crystal structure of a putative Methyltransferase from Pseudomonas syringae' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Filippova, E.V.' 1 primary 'Wawrzak, Z.' 2 primary 'Minasov, G.' 3 primary 'Shuvalova, L.' 4 primary 'Kiryukhina, O.' 5 primary 'Clancy, S.' 6 primary 'Joachimiak, A.' 7 primary 'Anderson, W.F.' 8 primary 'Midwest Center for Structural Genomics (MCSG)' 9 # _cell.entry_id 4ISC _cell.length_a 43.460 _cell.length_b 43.460 _cell.length_c 181.290 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ISC _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Methyltransferase 18817.207 1 ? ? ? ? 2 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;RWYERRKRALTLAALPRERYRAIFEPGCANGELSADLAERCD(MSE)LVCCDTSTQAVELARQRLADVPHARVVQARLPH QWPAGQFDLIVFSELGYYLDAADLHRLIDCALAALSPDGQLLACHWRPDIEGCPLNAQAVHAILAERLS(MSE)HRLFSH HEQDFLLDLWSR ; _entity_poly.pdbx_seq_one_letter_code_can ;RWYERRKRALTLAALPRERYRAIFEPGCANGELSADLAERCDMLVCCDTSTQAVELARQRLADVPHARVVQARLPHQWPA GQFDLIVFSELGYYLDAADLHRLIDCALAALSPDGQLLACHWRPDIEGCPLNAQAVHAILAERLSMHRLFSHHEQDFLLD LWSR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier MCSG-APC102469 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 TRP n 1 3 TYR n 1 4 GLU n 1 5 ARG n 1 6 ARG n 1 7 LYS n 1 8 ARG n 1 9 ALA n 1 10 LEU n 1 11 THR n 1 12 LEU n 1 13 ALA n 1 14 ALA n 1 15 LEU n 1 16 PRO n 1 17 ARG n 1 18 GLU n 1 19 ARG n 1 20 TYR n 1 21 ARG n 1 22 ALA n 1 23 ILE n 1 24 PHE n 1 25 GLU n 1 26 PRO n 1 27 GLY n 1 28 CYS n 1 29 ALA n 1 30 ASN n 1 31 GLY n 1 32 GLU n 1 33 LEU n 1 34 SER n 1 35 ALA n 1 36 ASP n 1 37 LEU n 1 38 ALA n 1 39 GLU n 1 40 ARG n 1 41 CYS n 1 42 ASP n 1 43 MSE n 1 44 LEU n 1 45 VAL n 1 46 CYS n 1 47 CYS n 1 48 ASP n 1 49 THR n 1 50 SER n 1 51 THR n 1 52 GLN n 1 53 ALA n 1 54 VAL n 1 55 GLU n 1 56 LEU n 1 57 ALA n 1 58 ARG n 1 59 GLN n 1 60 ARG n 1 61 LEU n 1 62 ALA n 1 63 ASP n 1 64 VAL n 1 65 PRO n 1 66 HIS n 1 67 ALA n 1 68 ARG n 1 69 VAL n 1 70 VAL n 1 71 GLN n 1 72 ALA n 1 73 ARG n 1 74 LEU n 1 75 PRO n 1 76 HIS n 1 77 GLN n 1 78 TRP n 1 79 PRO n 1 80 ALA n 1 81 GLY n 1 82 GLN n 1 83 PHE n 1 84 ASP n 1 85 LEU n 1 86 ILE n 1 87 VAL n 1 88 PHE n 1 89 SER n 1 90 GLU n 1 91 LEU n 1 92 GLY n 1 93 TYR n 1 94 TYR n 1 95 LEU n 1 96 ASP n 1 97 ALA n 1 98 ALA n 1 99 ASP n 1 100 LEU n 1 101 HIS n 1 102 ARG n 1 103 LEU n 1 104 ILE n 1 105 ASP n 1 106 CYS n 1 107 ALA n 1 108 LEU n 1 109 ALA n 1 110 ALA n 1 111 LEU n 1 112 SER n 1 113 PRO n 1 114 ASP n 1 115 GLY n 1 116 GLN n 1 117 LEU n 1 118 LEU n 1 119 ALA n 1 120 CYS n 1 121 HIS n 1 122 TRP n 1 123 ARG n 1 124 PRO n 1 125 ASP n 1 126 ILE n 1 127 GLU n 1 128 GLY n 1 129 CYS n 1 130 PRO n 1 131 LEU n 1 132 ASN n 1 133 ALA n 1 134 GLN n 1 135 ALA n 1 136 VAL n 1 137 HIS n 1 138 ALA n 1 139 ILE n 1 140 LEU n 1 141 ALA n 1 142 GLU n 1 143 ARG n 1 144 LEU n 1 145 SER n 1 146 MSE n 1 147 HIS n 1 148 ARG n 1 149 LEU n 1 150 PHE n 1 151 SER n 1 152 HIS n 1 153 HIS n 1 154 GLU n 1 155 GLN n 1 156 ASP n 1 157 PHE n 1 158 LEU n 1 159 LEU n 1 160 ASP n 1 161 LEU n 1 162 TRP n 1 163 SER n 1 164 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DC3000 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas syringae pv. tomato' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223283 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG57 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q880M1_PSESM _struct_ref.pdbx_db_accession Q880M1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RWYERRKRALTLAALPRERYRAIFEPGCANGELSADLAERCDMLVCCDTSTQAVELARQRLADVPHARVVQARLPHQWPA GQFDLIVFSELGYYLDAADLHRLIDCALAALSPDGQLLACHWRPDIEGCPLNAQAVHAILAERLSMHRLFSHHEQDFLLD LWSR ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ISC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q880M1 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 187 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 187 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ISC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.2 M Na acetate, 0.1 M Bis Tris propane, 20% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2012-11-19 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI{111}' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97931 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97931 # _reflns.entry_id 4ISC _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.26 _reflns.d_resolution_high 2.71 _reflns.number_obs 5263 _reflns.number_all 5263 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.3 _reflns.B_iso_Wilson_estimate 36.3 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.71 _reflns_shell.d_res_low 2.78 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 369 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4ISC _refine.ls_number_reflns_obs 4459 _refine.ls_number_reflns_all 4459 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.26 _refine.ls_d_res_high 2.78 _refine.ls_percent_reflns_obs 95.78 _refine.ls_R_factor_obs 0.19439 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19016 _refine.ls_R_factor_R_free 0.27744 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 214 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.925 _refine.correlation_coeff_Fo_to_Fc_free 0.857 _refine.B_iso_mean 26.574 _refine.aniso_B[1][1] 0.77 _refine.aniso_B[2][2] 0.77 _refine.aniso_B[3][3] -1.54 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.289 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 29.215 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1249 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1290 _refine_hist.d_res_high 2.78 _refine_hist.d_res_low 42.26 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.019 ? 1283 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.733 1.953 ? 1738 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.747 5.000 ? 153 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.969 21.970 ? 66 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 20.133 15.000 ? 204 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 19.666 15.000 ? 17 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.104 0.200 ? 192 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.021 ? 984 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.780 _refine_ls_shell.d_res_low 2.852 _refine_ls_shell.number_reflns_R_work 298 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_obs 89.37 _refine_ls_shell.R_factor_R_free 0.271 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4ISC _struct.title 'Crystal structure of a putative Methyltransferase from Pseudomonas syringae' _struct.pdbx_descriptor Methyltransferase _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ISC _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, Methyltransferase, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 1 ? ALA A 14 ? ARG A 24 ALA A 37 1 ? 14 HELX_P HELX_P2 2 ASN A 30 ? GLU A 39 ? ASN A 53 GLU A 62 1 ? 10 HELX_P HELX_P3 3 SER A 50 ? LEU A 61 ? SER A 73 LEU A 84 1 ? 12 HELX_P HELX_P4 4 ASP A 96 ? ALA A 110 ? ASP A 119 ALA A 133 1 ? 15 HELX_P HELX_P5 5 ASN A 132 ? SER A 145 ? ASN A 155 SER A 168 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 46 SG ? ? A CYS 51 A CYS 69 1_555 ? ? ? ? ? ? ? 2.073 ? covale1 covale ? ? A ASP 42 C ? ? ? 1_555 A MSE 43 N ? ? A ASP 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 43 C ? ? ? 1_555 A LEU 44 N ? ? A MSE 66 A LEU 67 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A SER 145 C ? ? ? 1_555 A MSE 146 N ? ? A SER 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.316 ? covale4 covale ? ? A MSE 146 C ? ? ? 1_555 A HIS 147 N ? ? A MSE 169 A HIS 170 1_555 ? ? ? ? ? ? ? 1.329 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 67 ? GLN A 71 ? ALA A 90 GLN A 94 A 2 CYS A 41 ? ASP A 48 ? CYS A 64 ASP A 71 A 3 TYR A 20 ? GLU A 25 ? TYR A 43 GLU A 48 A 4 PHE A 83 ? PHE A 88 ? PHE A 106 PHE A 111 A 5 LEU A 111 ? TRP A 122 ? LEU A 134 TRP A 145 A 6 PHE A 157 ? SER A 163 ? PHE A 180 SER A 186 A 7 HIS A 147 ? HIS A 153 ? HIS A 170 HIS A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 70 ? O VAL A 93 N CYS A 46 ? N CYS A 69 A 2 3 O MSE A 43 ? O MSE A 66 N ILE A 23 ? N ILE A 46 A 3 4 N PHE A 24 ? N PHE A 47 O LEU A 85 ? O LEU A 108 A 4 5 N PHE A 88 ? N PHE A 111 O LEU A 118 ? O LEU A 141 A 5 6 N LEU A 117 ? N LEU A 140 O TRP A 162 ? O TRP A 185 A 6 7 O LEU A 161 ? O LEU A 184 N LEU A 149 ? N LEU A 172 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE BME A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PRO A 26 ? PRO A 49 . ? 1_555 ? 2 AC1 4 CYS A 47 ? CYS A 70 . ? 1_555 ? 3 AC1 4 PRO A 75 ? PRO A 98 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 417 . ? 1_555 ? # _database_PDB_matrix.entry_id 4ISC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ISC _atom_sites.fract_transf_matrix[1][1] 0.023010 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023010 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005516 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 24 24 ARG ARG A . n A 1 2 TRP 2 25 25 TRP TRP A . n A 1 3 TYR 3 26 26 TYR TYR A . n A 1 4 GLU 4 27 27 GLU GLU A . n A 1 5 ARG 5 28 28 ARG ARG A . n A 1 6 ARG 6 29 29 ARG ARG A . n A 1 7 LYS 7 30 30 LYS LYS A . n A 1 8 ARG 8 31 31 ARG ARG A . n A 1 9 ALA 9 32 32 ALA ALA A . n A 1 10 LEU 10 33 33 LEU LEU A . n A 1 11 THR 11 34 34 THR THR A . n A 1 12 LEU 12 35 35 LEU LEU A . n A 1 13 ALA 13 36 36 ALA ALA A . n A 1 14 ALA 14 37 37 ALA ALA A . n A 1 15 LEU 15 38 38 LEU LEU A . n A 1 16 PRO 16 39 39 PRO PRO A . n A 1 17 ARG 17 40 40 ARG ARG A . n A 1 18 GLU 18 41 41 GLU GLU A . n A 1 19 ARG 19 42 42 ARG ARG A . n A 1 20 TYR 20 43 43 TYR TYR A . n A 1 21 ARG 21 44 44 ARG ARG A . n A 1 22 ALA 22 45 45 ALA ALA A . n A 1 23 ILE 23 46 46 ILE ILE A . n A 1 24 PHE 24 47 47 PHE PHE A . n A 1 25 GLU 25 48 48 GLU GLU A . n A 1 26 PRO 26 49 49 PRO PRO A . n A 1 27 GLY 27 50 50 GLY GLY A . n A 1 28 CYS 28 51 51 CYS CYS A . n A 1 29 ALA 29 52 52 ALA ALA A . n A 1 30 ASN 30 53 53 ASN ASN A . n A 1 31 GLY 31 54 54 GLY GLY A . n A 1 32 GLU 32 55 55 GLU GLU A . n A 1 33 LEU 33 56 56 LEU LEU A . n A 1 34 SER 34 57 57 SER SER A . n A 1 35 ALA 35 58 58 ALA ALA A . n A 1 36 ASP 36 59 59 ASP ASP A . n A 1 37 LEU 37 60 60 LEU LEU A . n A 1 38 ALA 38 61 61 ALA ALA A . n A 1 39 GLU 39 62 62 GLU GLU A . n A 1 40 ARG 40 63 63 ARG ARG A . n A 1 41 CYS 41 64 64 CYS CYS A . n A 1 42 ASP 42 65 65 ASP ASP A . n A 1 43 MSE 43 66 66 MSE MSE A . n A 1 44 LEU 44 67 67 LEU LEU A . n A 1 45 VAL 45 68 68 VAL VAL A . n A 1 46 CYS 46 69 69 CYS CYS A . n A 1 47 CYS 47 70 70 CYS CYS A . n A 1 48 ASP 48 71 71 ASP ASP A . n A 1 49 THR 49 72 72 THR THR A . n A 1 50 SER 50 73 73 SER SER A . n A 1 51 THR 51 74 74 THR THR A . n A 1 52 GLN 52 75 75 GLN GLN A . n A 1 53 ALA 53 76 76 ALA ALA A . n A 1 54 VAL 54 77 77 VAL VAL A . n A 1 55 GLU 55 78 78 GLU GLU A . n A 1 56 LEU 56 79 79 LEU LEU A . n A 1 57 ALA 57 80 80 ALA ALA A . n A 1 58 ARG 58 81 81 ARG ARG A . n A 1 59 GLN 59 82 82 GLN GLN A . n A 1 60 ARG 60 83 83 ARG ARG A . n A 1 61 LEU 61 84 84 LEU LEU A . n A 1 62 ALA 62 85 85 ALA ALA A . n A 1 63 ASP 63 86 86 ASP ASP A . n A 1 64 VAL 64 87 87 VAL VAL A . n A 1 65 PRO 65 88 88 PRO PRO A . n A 1 66 HIS 66 89 89 HIS HIS A . n A 1 67 ALA 67 90 90 ALA ALA A . n A 1 68 ARG 68 91 91 ARG ARG A . n A 1 69 VAL 69 92 92 VAL VAL A . n A 1 70 VAL 70 93 93 VAL VAL A . n A 1 71 GLN 71 94 94 GLN GLN A . n A 1 72 ALA 72 95 95 ALA ALA A . n A 1 73 ARG 73 96 96 ARG ARG A . n A 1 74 LEU 74 97 97 LEU LEU A . n A 1 75 PRO 75 98 98 PRO PRO A . n A 1 76 HIS 76 99 99 HIS HIS A . n A 1 77 GLN 77 100 100 GLN GLN A . n A 1 78 TRP 78 101 101 TRP TRP A . n A 1 79 PRO 79 102 102 PRO PRO A . n A 1 80 ALA 80 103 103 ALA ALA A . n A 1 81 GLY 81 104 104 GLY GLY A . n A 1 82 GLN 82 105 105 GLN GLN A . n A 1 83 PHE 83 106 106 PHE PHE A . n A 1 84 ASP 84 107 107 ASP ASP A . n A 1 85 LEU 85 108 108 LEU LEU A . n A 1 86 ILE 86 109 109 ILE ILE A . n A 1 87 VAL 87 110 110 VAL VAL A . n A 1 88 PHE 88 111 111 PHE PHE A . n A 1 89 SER 89 112 112 SER SER A . n A 1 90 GLU 90 113 113 GLU GLU A . n A 1 91 LEU 91 114 114 LEU LEU A . n A 1 92 GLY 92 115 ? ? ? A . n A 1 93 TYR 93 116 ? ? ? A . n A 1 94 TYR 94 117 117 TYR TYR A . n A 1 95 LEU 95 118 118 LEU LEU A . n A 1 96 ASP 96 119 119 ASP ASP A . n A 1 97 ALA 97 120 120 ALA ALA A . n A 1 98 ALA 98 121 121 ALA ALA A . n A 1 99 ASP 99 122 122 ASP ASP A . n A 1 100 LEU 100 123 123 LEU LEU A . n A 1 101 HIS 101 124 124 HIS HIS A . n A 1 102 ARG 102 125 125 ARG ARG A . n A 1 103 LEU 103 126 126 LEU LEU A . n A 1 104 ILE 104 127 127 ILE ILE A . n A 1 105 ASP 105 128 128 ASP ASP A . n A 1 106 CYS 106 129 129 CYS CYS A . n A 1 107 ALA 107 130 130 ALA ALA A . n A 1 108 LEU 108 131 131 LEU LEU A . n A 1 109 ALA 109 132 132 ALA ALA A . n A 1 110 ALA 110 133 133 ALA ALA A . n A 1 111 LEU 111 134 134 LEU LEU A . n A 1 112 SER 112 135 135 SER SER A . n A 1 113 PRO 113 136 136 PRO PRO A . n A 1 114 ASP 114 137 137 ASP ASP A . n A 1 115 GLY 115 138 138 GLY GLY A . n A 1 116 GLN 116 139 139 GLN GLN A . n A 1 117 LEU 117 140 140 LEU LEU A . n A 1 118 LEU 118 141 141 LEU LEU A . n A 1 119 ALA 119 142 142 ALA ALA A . n A 1 120 CYS 120 143 143 CYS CYS A . n A 1 121 HIS 121 144 144 HIS HIS A . n A 1 122 TRP 122 145 145 TRP TRP A . n A 1 123 ARG 123 146 146 ARG ARG A . n A 1 124 PRO 124 147 147 PRO PRO A . n A 1 125 ASP 125 148 ? ? ? A . n A 1 126 ILE 126 149 ? ? ? A . n A 1 127 GLU 127 150 ? ? ? A . n A 1 128 GLY 128 151 ? ? ? A . n A 1 129 CYS 129 152 ? ? ? A . n A 1 130 PRO 130 153 ? ? ? A . n A 1 131 LEU 131 154 154 LEU LEU A . n A 1 132 ASN 132 155 155 ASN ASN A . n A 1 133 ALA 133 156 156 ALA ALA A . n A 1 134 GLN 134 157 157 GLN GLN A . n A 1 135 ALA 135 158 158 ALA ALA A . n A 1 136 VAL 136 159 159 VAL VAL A . n A 1 137 HIS 137 160 160 HIS HIS A . n A 1 138 ALA 138 161 161 ALA ALA A . n A 1 139 ILE 139 162 162 ILE ILE A . n A 1 140 LEU 140 163 163 LEU LEU A . n A 1 141 ALA 141 164 164 ALA ALA A . n A 1 142 GLU 142 165 165 GLU GLU A . n A 1 143 ARG 143 166 166 ARG ARG A . n A 1 144 LEU 144 167 167 LEU LEU A . n A 1 145 SER 145 168 168 SER SER A . n A 1 146 MSE 146 169 169 MSE MSE A . n A 1 147 HIS 147 170 170 HIS HIS A . n A 1 148 ARG 148 171 171 ARG ARG A . n A 1 149 LEU 149 172 172 LEU LEU A . n A 1 150 PHE 150 173 173 PHE PHE A . n A 1 151 SER 151 174 174 SER SER A . n A 1 152 HIS 152 175 175 HIS HIS A . n A 1 153 HIS 153 176 176 HIS HIS A . n A 1 154 GLU 154 177 177 GLU GLU A . n A 1 155 GLN 155 178 178 GLN GLN A . n A 1 156 ASP 156 179 179 ASP ASP A . n A 1 157 PHE 157 180 180 PHE PHE A . n A 1 158 LEU 158 181 181 LEU LEU A . n A 1 159 LEU 159 182 182 LEU LEU A . n A 1 160 ASP 160 183 183 ASP ASP A . n A 1 161 LEU 161 184 184 LEU LEU A . n A 1 162 TRP 162 185 185 TRP TRP A . n A 1 163 SER 163 186 186 SER SER A . n A 1 164 ARG 164 187 187 ARG ARG A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BME 1 301 1 BME BME A . C 3 HOH 1 401 2 HOH HOH A . C 3 HOH 2 402 3 HOH HOH A . C 3 HOH 3 403 4 HOH HOH A . C 3 HOH 4 404 6 HOH HOH A . C 3 HOH 5 405 7 HOH HOH A . C 3 HOH 6 406 8 HOH HOH A . C 3 HOH 7 407 9 HOH HOH A . C 3 HOH 8 408 10 HOH HOH A . C 3 HOH 9 409 12 HOH HOH A . C 3 HOH 10 410 13 HOH HOH A . C 3 HOH 11 411 18 HOH HOH A . C 3 HOH 12 412 19 HOH HOH A . C 3 HOH 13 413 20 HOH HOH A . C 3 HOH 14 414 21 HOH HOH A . C 3 HOH 15 415 23 HOH HOH A . C 3 HOH 16 416 24 HOH HOH A . C 3 HOH 17 417 25 HOH HOH A . C 3 HOH 18 418 26 HOH HOH A . C 3 HOH 19 419 27 HOH HOH A . C 3 HOH 20 420 28 HOH HOH A . C 3 HOH 21 421 32 HOH HOH A . C 3 HOH 22 422 34 HOH HOH A . C 3 HOH 23 423 35 HOH HOH A . C 3 HOH 24 424 36 HOH HOH A . C 3 HOH 25 425 37 HOH HOH A . C 3 HOH 26 426 38 HOH HOH A . C 3 HOH 27 427 39 HOH HOH A . C 3 HOH 28 428 41 HOH HOH A . C 3 HOH 29 429 42 HOH HOH A . C 3 HOH 30 430 43 HOH HOH A . C 3 HOH 31 431 44 HOH HOH A . C 3 HOH 32 432 45 HOH HOH A . C 3 HOH 33 433 47 HOH HOH A . C 3 HOH 34 434 48 HOH HOH A . C 3 HOH 35 435 50 HOH HOH A . C 3 HOH 36 436 51 HOH HOH A . C 3 HOH 37 437 52 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 43 A MSE 66 ? MET SELENOMETHIONINE 2 A MSE 146 A MSE 169 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 406 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-20 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_citation_author.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 21.1158 7.2279 76.1018 0.0330 0.2439 0.2587 0.0122 -0.0019 0.0275 2.7753 1.8696 3.7355 -0.1084 -1.5982 -0.5053 0.1258 -0.0466 0.1636 -0.1083 -0.0887 -0.4349 -0.0547 0.7158 -0.0371 'X-RAY DIFFRACTION' 2 ? refined 9.7157 -1.6269 79.3589 0.1674 0.0494 0.1443 0.0371 -0.0001 0.0114 3.0866 3.5624 5.1978 0.3701 -0.7266 1.8989 0.1249 -0.0907 -0.2808 0.0079 -0.0670 0.1473 0.6852 0.1839 -0.0578 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 24 ? ? A 119 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 120 ? ? A 187 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' Max ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.7.0029 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 86 ? ? -73.72 28.63 2 1 GLN A 100 ? ? -115.72 73.67 3 1 LEU A 118 ? ? -151.68 -22.10 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 117 ? CG ? A TYR 94 CG 2 1 Y 1 A TYR 117 ? CD1 ? A TYR 94 CD1 3 1 Y 1 A TYR 117 ? CD2 ? A TYR 94 CD2 4 1 Y 1 A TYR 117 ? CE1 ? A TYR 94 CE1 5 1 Y 1 A TYR 117 ? CE2 ? A TYR 94 CE2 6 1 Y 1 A TYR 117 ? CZ ? A TYR 94 CZ 7 1 Y 1 A TYR 117 ? OH ? A TYR 94 OH # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 115 ? A GLY 92 2 1 Y 1 A TYR 116 ? A TYR 93 3 1 Y 1 A ASP 148 ? A ASP 125 4 1 Y 1 A ILE 149 ? A ILE 126 5 1 Y 1 A GLU 150 ? A GLU 127 6 1 Y 1 A GLY 151 ? A GLY 128 7 1 Y 1 A CYS 152 ? A CYS 129 8 1 Y 1 A PRO 153 ? A PRO 130 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BETA-MERCAPTOETHANOL BME 3 water HOH #