HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-JAN-13 4ITH TITLE CRYSTAL STRUCTURE OF RIP1 KINASE IN COMPLEX WITH NECROSTATIN-1 ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DEATH PROTEIN RIP, RECEPTOR-INTERACTING PROTEIN 1, RIP- COMPND 5 1, SERINE/THREONINE-PROTEIN KINASE RIP; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK1, RIP, RIP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ALPHA/BETA, RIP1 KINASE, NECROPTOSIS, NECROSTATINS, KINASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.XIE,W.PENG,Y.LIU,C.YAN,Y.SHI REVDAT 3 20-SEP-23 4ITH 1 REMARK SEQADV REVDAT 2 27-MAR-13 4ITH 1 JRNL REVDAT 1 13-MAR-13 4ITH 0 JRNL AUTH T.XIE,W.PENG,Y.LIU,C.YAN,J.MAKI,A.DEGTEREV,J.YUAN,Y.SHI JRNL TITL STRUCTURAL BASIS OF RIP1 INHIBITION BY NECROSTATINS. JRNL REF STRUCTURE V. 21 493 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23473668 JRNL DOI 10.1016/J.STR.2013.01.016 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8931 - 4.8474 0.99 2781 153 0.2140 0.2405 REMARK 3 2 4.8474 - 3.8487 1.00 2685 149 0.1794 0.2138 REMARK 3 3 3.8487 - 3.3626 1.00 2623 158 0.2094 0.2177 REMARK 3 4 3.3626 - 3.0553 1.00 2653 143 0.2308 0.2496 REMARK 3 5 3.0553 - 2.8364 1.00 2638 116 0.2398 0.2288 REMARK 3 6 2.8364 - 2.6692 1.00 2614 133 0.2474 0.3015 REMARK 3 7 2.6692 - 2.5355 1.00 2580 153 0.2550 0.3387 REMARK 3 8 2.5355 - 2.4252 1.00 2607 124 0.2500 0.2825 REMARK 3 9 2.4252 - 2.3318 0.99 2583 126 0.2579 0.2873 REMARK 3 10 2.3318 - 2.2500 0.99 2547 140 0.2901 0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 39.72 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.18910 REMARK 3 B22 (A**2) : 8.80700 REMARK 3 B33 (A**2) : -5.94270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4173 REMARK 3 ANGLE : 1.337 5644 REMARK 3 CHIRALITY : 0.191 641 REMARK 3 PLANARITY : 0.006 708 REMARK 3 DIHEDRAL : 17.125 1538 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 10:93 REMARK 3 ORIGIN FOR THE GROUP (A): -27.6279 13.0174 11.3756 REMARK 3 T TENSOR REMARK 3 T11: 0.7088 T22: 0.2092 REMARK 3 T33: 0.4135 T12: 0.1715 REMARK 3 T13: -0.1698 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 1.4416 L22: 5.4977 REMARK 3 L33: 1.4064 L12: 0.2733 REMARK 3 L13: -0.3374 L23: -0.2330 REMARK 3 S TENSOR REMARK 3 S11: -0.2776 S12: 0.1628 S13: 0.5928 REMARK 3 S21: -0.6714 S22: -0.0883 S23: 0.5017 REMARK 3 S31: -0.9544 S32: -0.8018 S33: 0.1484 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 10:93 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1704 -69.7705 28.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.3652 T22: 0.4110 REMARK 3 T33: 0.3614 T12: 0.0962 REMARK 3 T13: -0.0859 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.4002 L22: 4.3233 REMARK 3 L33: 2.5319 L12: -1.5871 REMARK 3 L13: -0.4587 L23: 1.3312 REMARK 3 S TENSOR REMARK 3 S11: -0.0979 S12: -0.2009 S13: -0.3233 REMARK 3 S21: 0.1150 S22: 0.3606 S23: -0.3395 REMARK 3 S31: 0.5395 S32: 0.6383 S33: -0.2359 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 112:293 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6207 -12.2809 10.6497 REMARK 3 T TENSOR REMARK 3 T11: 0.1606 T22: 0.1264 REMARK 3 T33: 0.1873 T12: 0.0222 REMARK 3 T13: -0.0154 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.5735 L22: 3.0669 REMARK 3 L33: 4.5072 L12: -0.3775 REMARK 3 L13: 0.6787 L23: 1.6650 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.0048 S13: -0.1385 REMARK 3 S21: -0.0338 S22: 0.0773 S23: -0.1422 REMARK 3 S31: 0.1652 S32: 0.1777 S33: -0.0781 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 112:293 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1518 -45.5021 22.3624 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.2934 REMARK 3 T33: 0.1566 T12: -0.0341 REMARK 3 T13: 0.0039 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.4572 L22: 2.8673 REMARK 3 L33: 2.7012 L12: 0.1256 REMARK 3 L13: -0.2977 L23: -1.2859 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: -0.1754 S13: 0.1049 REMARK 3 S21: 0.0020 S22: -0.0759 S23: -0.1414 REMARK 3 S31: -0.2339 S32: 0.2835 S33: -0.0511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ITH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3C4C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M NH4I, 20% POLYETHYLENE GLYCOL REMARK 280 (PEG) 3350, 0.03 M GLYCYL-GLYCYL-GLYCINE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.56400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.80250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.56400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.80250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 GLU A 22 REMARK 465 LEU A 23 REMARK 465 ASP A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 LYS A 30 REMARK 465 TYR A 48 REMARK 465 LYS A 49 REMARK 465 GLY A 50 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 CYS A 53 REMARK 465 ILE A 54 REMARK 465 GLU A 55 REMARK 465 HIS A 56 REMARK 465 ASN A 169 REMARK 465 ASN A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 HIS A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 ASP B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 LEU B 176 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 VAL B 179 REMARK 465 ASP B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 ASN B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 MET A 108 CG SD CE REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LEU B 7 CG CD1 CD2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LEU B 23 CG CD1 CD2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 MET B 108 CG SD CE REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 HIS B 173 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 174 CG OD1 ND2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 208 O ARG B 275 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 131.27 154.26 REMARK 500 HIS A 72 145.80 -170.84 REMARK 500 GLU A 85 -99.62 37.26 REMARK 500 LYS A 87 136.08 -179.73 REMARK 500 LYS A 137 -21.46 79.64 REMARK 500 ASP A 138 46.67 -140.69 REMARK 500 ASP A 200 87.10 -151.79 REMARK 500 SER B 20 105.68 118.70 REMARK 500 GLU B 22 106.63 -51.47 REMARK 500 ASN B 52 52.55 -69.90 REMARK 500 HIS B 56 35.57 -71.63 REMARK 500 LYS B 137 -41.26 99.79 REMARK 500 LYS B 163 -56.73 -120.84 REMARK 500 ASN B 170 44.27 -148.04 REMARK 500 GLU B 171 -162.84 -76.27 REMARK 500 ASN B 174 -126.91 -140.50 REMARK 500 ASN B 202 66.84 -117.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RCM A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RCM B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ITI RELATED DB: PDB REMARK 900 RELATED ID: 4ITJ RELATED DB: PDB DBREF 4ITH A 1 294 UNP Q13546 RIPK1_HUMAN 1 294 DBREF 4ITH B 1 294 UNP Q13546 RIPK1_HUMAN 1 294 SEQADV 4ITH ALA A 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 4ITH ALA A 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 4ITH ALA A 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 4ITH ALA A 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQADV 4ITH ALA B 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 4ITH ALA B 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 4ITH ALA B 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 4ITH ALA B 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQRES 1 A 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 A 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 A 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 A 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 A 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 A 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 A 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 A 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 A 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 A 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 A 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 A 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 A 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 A 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 A 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 A 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 A 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 A 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 A 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 A 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 A 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 A 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 A 294 PRO PHE TYR LEU SER GLN LEU GLU SEQRES 1 B 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 B 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 B 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 B 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 B 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 B 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 B 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 B 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 B 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 B 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 B 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 B 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 B 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 B 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 B 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 B 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 B 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 B 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 B 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 B 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 B 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 B 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 B 294 PRO PHE TYR LEU SER GLN LEU GLU HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET NA A 306 1 HET RCM A 307 19 HET IOD B 301 1 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD B 305 1 HET NA B 306 1 HET RCM B 307 19 HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETNAM RCM (5R)-5-[(7-CHLORO-1H-INDOL-3-YL)METHYL]-3- HETNAM 2 RCM METHYLIMIDAZOLIDINE-2,4-DIONE FORMUL 3 IOD 10(I 1-) FORMUL 8 NA 2(NA 1+) FORMUL 9 RCM 2(C13 H12 CL N3 O2) FORMUL 17 HOH *132(H2 O) HELIX 1 1 LYS A 13 PHE A 17 5 5 HELIX 2 2 GLU A 58 ARG A 69 1 12 HELIX 3 3 ASN A 99 LYS A 105 1 7 HELIX 4 4 PRO A 111 LYS A 132 1 22 HELIX 5 5 LYS A 140 GLU A 142 5 3 HELIX 6 6 LYS A 163 LEU A 168 1 6 HELIX 7 7 THR A 206 ASN A 224 1 19 HELIX 8 8 ALA A 233 SER A 243 1 11 HELIX 9 9 ASP A 248 ILE A 252 5 5 HELIX 10 10 PRO A 257 TRP A 268 1 12 HELIX 11 11 ASN A 271 ARG A 275 5 5 HELIX 12 12 THR A 277 LEU A 293 1 17 HELIX 13 13 LYS B 13 PHE B 17 5 5 HELIX 14 14 HIS B 56 ARG B 69 1 14 HELIX 15 15 ASN B 99 LYS B 105 1 7 HELIX 16 16 PRO B 111 LYS B 132 1 22 HELIX 17 17 LYS B 140 GLU B 142 5 3 HELIX 18 18 LYS B 163 ASN B 169 1 7 HELIX 19 19 GLY B 188 TYR B 192 5 5 HELIX 20 20 ALA B 194 LEU B 198 5 5 HELIX 21 21 THR B 206 ASN B 224 1 19 HELIX 22 22 ALA B 233 SER B 243 1 11 HELIX 23 23 ASP B 248 ILE B 252 5 5 HELIX 24 24 PRO B 257 TRP B 268 1 12 HELIX 25 25 ASN B 271 ARG B 275 5 5 HELIX 26 26 THR B 277 LEU B 293 1 17 SHEET 1 A 5 LYS A 11 MET A 12 0 SHEET 2 A 5 LEU A 78 GLU A 84 1 O VAL A 81 N MET A 12 SHEET 3 A 5 LYS A 87 GLU A 93 -1 O VAL A 91 N LEU A 79 SHEET 4 A 5 LEU A 41 THR A 46 -1 N ILE A 43 O MET A 92 SHEET 5 A 5 SER A 32 PHE A 35 -1 N SER A 32 O MET A 44 SHEET 1 B 2 ILE A 144 VAL A 146 0 SHEET 2 B 2 ILE A 152 ILE A 154 -1 O LYS A 153 N LEU A 145 SHEET 1 C 5 ILE B 10 MET B 12 0 SHEET 2 C 5 LEU B 78 GLU B 84 1 O VAL B 81 N MET B 12 SHEET 3 C 5 LYS B 87 GLU B 93 -1 O SER B 89 N ILE B 82 SHEET 4 C 5 GLY B 40 LYS B 49 -1 N VAL B 47 O TYR B 88 SHEET 5 C 5 VAL B 31 HIS B 36 -1 N ALA B 34 O MET B 42 SHEET 1 D 2 ILE B 144 VAL B 146 0 SHEET 2 D 2 ILE B 152 ILE B 154 -1 O LYS B 153 N LEU B 145 SITE 1 AC1 1 ILE A 232 SITE 1 AC2 2 ARG A 286 HOH A 424 SITE 1 AC3 1 ARG A 258 SITE 1 AC4 12 MET A 67 VAL A 75 VAL A 76 LEU A 78 SITE 2 AC4 12 MET A 92 LEU A 129 HIS A 136 ILE A 154 SITE 3 AC4 12 ALA A 155 ASP A 156 SER A 161 PHE A 162 SITE 1 AC5 1 HIS B 56 SITE 1 AC6 1 ARG B 286 SITE 1 AC7 1 TRP B 268 SITE 1 AC8 11 MET B 67 LEU B 70 VAL B 75 VAL B 76 SITE 2 AC8 11 LEU B 78 MET B 92 ILE B 154 ALA B 155 SITE 3 AC8 11 ASP B 156 SER B 161 PHE B 162 CRYST1 47.128 93.605 129.070 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007748 0.00000