HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-JAN-13 4ITI TITLE CRYSTAL STRUCTURE OF RIP1 KINASE IN COMPLEX WITH NECROSTATIN-3 ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DEATH PROTEIN RIP, RECEPTOR-INTERACTING PROTEIN 1, RIP- COMPND 5 1, SERINE/THREONINE-PROTEIN KINASE RIP; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK1, RIP, RIP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ALPHA/BETA, RIP1 KINASE, NECROPTOSIS, NECROSTATINS, KINASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.XIE,W.PENG,Y.LIU,C.YAN,Y.SHI REVDAT 3 20-SEP-23 4ITI 1 REMARK SEQADV REVDAT 2 27-MAR-13 4ITI 1 JRNL REVDAT 1 13-MAR-13 4ITI 0 JRNL AUTH T.XIE,W.PENG,Y.LIU,C.YAN,J.MAKI,A.DEGTEREV,J.YUAN,Y.SHI JRNL TITL STRUCTURAL BASIS OF RIP1 INHIBITION BY NECROSTATINS. JRNL REF STRUCTURE V. 21 493 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23473668 JRNL DOI 10.1016/J.STR.2013.01.016 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 18344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2682 - 5.4649 0.99 2625 149 0.2080 0.2460 REMARK 3 2 5.4649 - 4.3410 1.00 2532 139 0.1879 0.2274 REMARK 3 3 4.3410 - 3.7932 1.00 2534 132 0.2160 0.2427 REMARK 3 4 3.7932 - 3.4468 1.00 2498 124 0.2677 0.3698 REMARK 3 5 3.4468 - 3.2000 1.00 2499 130 0.2761 0.2951 REMARK 3 6 3.2000 - 3.0115 1.00 2468 149 0.2894 0.3208 REMARK 3 7 3.0115 - 2.8600 0.91 2254 111 0.3335 0.3520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 45.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.86420 REMARK 3 B22 (A**2) : 0.79720 REMARK 3 B33 (A**2) : 5.06700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4471 REMARK 3 ANGLE : 1.324 6042 REMARK 3 CHIRALITY : 0.081 664 REMARK 3 PLANARITY : 0.009 767 REMARK 3 DIHEDRAL : 18.320 1695 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 10:93 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4328 11.5047 -23.7312 REMARK 3 T TENSOR REMARK 3 T11: 0.6930 T22: 0.7741 REMARK 3 T33: 0.5546 T12: 0.0856 REMARK 3 T13: 0.0686 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 5.0477 L22: 4.5766 REMARK 3 L33: 4.3366 L12: -0.2446 REMARK 3 L13: -0.4699 L23: -2.8359 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: 0.1112 S13: -0.1932 REMARK 3 S21: -0.3621 S22: -0.1655 S23: -0.5008 REMARK 3 S31: 0.2308 S32: 0.6039 S33: 0.0237 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 10:93 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9662 -8.8782 -8.7054 REMARK 3 T TENSOR REMARK 3 T11: 0.6349 T22: 0.7897 REMARK 3 T33: 0.9572 T12: -0.0520 REMARK 3 T13: 0.0531 T23: -0.2225 REMARK 3 L TENSOR REMARK 3 L11: 3.9537 L22: 6.1396 REMARK 3 L33: 3.9747 L12: -0.5200 REMARK 3 L13: -1.5349 L23: -0.1504 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: -0.3532 S13: 0.7201 REMARK 3 S21: -0.0206 S22: -0.1521 S23: -0.4653 REMARK 3 S31: -0.5814 S32: 0.4793 S33: 0.1490 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 112:293 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7175 12.7766 -7.0424 REMARK 3 T TENSOR REMARK 3 T11: 0.6809 T22: 0.6479 REMARK 3 T33: 0.6971 T12: 0.1496 REMARK 3 T13: 0.1492 T23: 0.1450 REMARK 3 L TENSOR REMARK 3 L11: 3.6302 L22: 5.2251 REMARK 3 L33: 4.0178 L12: -1.3513 REMARK 3 L13: -0.5290 L23: -1.6681 REMARK 3 S TENSOR REMARK 3 S11: -0.0300 S12: -0.3724 S13: -0.0206 REMARK 3 S21: 0.7138 S22: 0.4340 S23: 0.9484 REMARK 3 S31: -0.4404 S32: -0.6426 S33: -0.2916 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 112:293 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5157 -10.6669 4.4008 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.4330 REMARK 3 T33: 0.3837 T12: -0.0046 REMARK 3 T13: 0.0050 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 4.2803 L22: 2.8650 REMARK 3 L33: 3.5614 L12: -0.2992 REMARK 3 L13: -1.1224 L23: -0.4074 REMARK 3 S TENSOR REMARK 3 S11: 0.0595 S12: 0.0344 S13: 0.1360 REMARK 3 S21: 0.1835 S22: 0.1791 S23: 0.0717 REMARK 3 S31: -0.3514 S32: 0.2048 S33: -0.2209 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 10:93 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 10:22 OR RESSEQ 30:93 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 598 REMARK 3 RMSD : 1.696 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 112:176 OR RESSEQ REMARK 3 187:228 OR RESSEQ 234:293 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 112:176 OR RESSEQ REMARK 3 188:293 ) REMARK 3 ATOM PAIRS NUMBER : 1305 REMARK 3 RMSD : 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ITI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ITH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 15% PEG 20,000, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.31500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.66250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.70350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.66250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.31500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.70350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 ILE A 232 REMARK 465 ALA A 233 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 LEU B 23 REMARK 465 ASP B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 VAL B 179 REMARK 465 ASP B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 ASN B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 MET A 108 CG SD CE REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LEU B 7 CG CD1 CD2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 MET B 108 CG SD CE REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 LEU B 176 CG CD1 CD2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 135 N CA C O CB CG1 CG2 REMARK 480 ILE A 135 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 192 OE1 GLU A 226 1.99 REMARK 500 OE2 GLU B 96 ND2 ASN B 148 2.02 REMARK 500 OG SER A 161 F29 1HW A 301 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 227 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 20 11.06 -65.30 REMARK 500 SER A 25 21.89 -79.28 REMARK 500 CYS A 53 47.31 177.50 REMARK 500 ILE A 54 15.53 -61.36 REMARK 500 GLU A 85 101.34 -57.35 REMARK 500 MET A 108 -112.65 -103.47 REMARK 500 LYS A 137 3.10 58.78 REMARK 500 ASP A 138 39.95 -153.44 REMARK 500 PHE A 150 18.64 49.49 REMARK 500 ASN A 170 -5.35 -140.99 REMARK 500 GLU A 171 106.80 -48.50 REMARK 500 HIS A 173 15.01 -69.21 REMARK 500 THR A 189 2.20 -49.50 REMARK 500 ASN A 199 14.10 52.91 REMARK 500 ASN A 224 33.72 39.75 REMARK 500 GLU A 226 -179.39 -68.74 REMARK 500 GLN A 235 -65.36 -15.32 REMARK 500 ASP A 248 89.22 -63.30 REMARK 500 VAL A 249 5.95 -63.33 REMARK 500 PRO A 257 152.20 -39.87 REMARK 500 CYS B 53 39.64 -164.96 REMARK 500 GLU B 55 5.69 -66.00 REMARK 500 GLU B 85 94.64 -46.91 REMARK 500 GLU B 107 99.83 -40.90 REMARK 500 PRO B 111 165.90 -43.65 REMARK 500 LYS B 137 -25.18 78.94 REMARK 500 ASP B 147 -163.01 -78.32 REMARK 500 LYS B 163 -64.65 -135.92 REMARK 500 GLU B 207 -37.69 -35.81 REMARK 500 TYR B 228 40.34 73.57 REMARK 500 ALA B 231 -171.82 -65.03 REMARK 500 ILE B 232 -38.92 -145.09 REMARK 500 THR B 253 4.00 -50.37 REMARK 500 GLN B 292 -111.43 -101.24 REMARK 500 GLN B 292 -107.84 -104.81 REMARK 500 LEU B 293 -27.43 -28.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1HW A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1HW B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ITH RELATED DB: PDB REMARK 900 RELATED ID: 4ITJ RELATED DB: PDB DBREF 4ITI A 1 294 UNP Q13546 RIPK1_HUMAN 1 294 DBREF 4ITI B 1 294 UNP Q13546 RIPK1_HUMAN 1 294 SEQADV 4ITI ALA A 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 4ITI ALA A 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 4ITI ALA A 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 4ITI ALA A 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQADV 4ITI ALA B 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 4ITI ALA B 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 4ITI ALA B 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 4ITI ALA B 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQRES 1 A 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 A 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 A 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 A 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 A 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 A 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 A 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 A 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 A 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 A 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 A 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 A 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 A 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 A 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 A 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 A 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 A 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 A 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 A 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 A 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 A 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 A 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 A 294 PRO PHE TYR LEU SER GLN LEU GLU SEQRES 1 B 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 B 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 B 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 B 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 B 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 B 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 B 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 B 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 B 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 B 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 B 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 B 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 B 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 B 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 B 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 B 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 B 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 B 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 B 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 B 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 B 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 B 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 B 294 PRO PHE TYR LEU SER GLN LEU GLU HET 1HW A 301 31 HET 1HW B 301 31 HETNAM 1HW 1-{(3S,3AS)-3-[3-FLUORO-4-(TRIFLUOROMETHOXY)PHENYL]-8- HETNAM 2 1HW METHOXY-3,3A,4,5-TETRAHYDRO-2H-BENZO[G]INDAZOL-2-YL}- HETNAM 3 1HW 2-HYDROXYETHANONE FORMUL 3 1HW 2(C21 H18 F4 N2 O4) HELIX 1 1 HIS A 56 ASN A 68 1 13 HELIX 2 2 LEU A 100 LYS A 105 1 6 HELIX 3 3 PRO A 111 LYS A 132 1 22 HELIX 4 4 LYS A 140 GLU A 142 5 3 HELIX 5 5 LYS A 163 ASN A 169 1 7 HELIX 6 6 GLY A 187 TYR A 191 5 5 HELIX 7 7 ALA A 194 LEU A 198 5 5 HELIX 8 8 THR A 206 ALA A 223 1 18 HELIX 9 9 GLN A 235 GLY A 244 1 10 HELIX 10 10 PRO A 257 TRP A 268 1 12 HELIX 11 11 THR A 277 LEU A 293 1 17 HELIX 12 12 LYS B 13 SER B 15 5 3 HELIX 13 13 CYS B 53 GLU B 55 5 3 HELIX 14 14 HIS B 56 ASN B 68 1 13 HELIX 15 15 LEU B 100 ALA B 106 1 7 HELIX 16 16 PRO B 111 LYS B 132 1 22 HELIX 17 17 LYS B 140 GLU B 142 5 3 HELIX 18 18 LYS B 163 ASN B 170 1 8 HELIX 19 19 THR B 189 MET B 193 1 5 HELIX 20 20 ALA B 194 LEU B 198 5 5 HELIX 21 21 THR B 206 ASN B 224 1 19 HELIX 22 22 ALA B 233 SER B 243 1 11 HELIX 23 23 ASP B 248 ILE B 252 5 5 HELIX 24 24 PRO B 257 TRP B 268 1 12 HELIX 25 25 ASN B 271 ARG B 275 5 5 HELIX 26 26 THR B 277 GLN B 292 1 16 SHEET 1 A 5 PHE A 17 LEU A 18 0 SHEET 2 A 5 SER A 32 HIS A 36 -1 O PHE A 35 N LEU A 18 SHEET 3 A 5 GLY A 40 LYS A 49 -1 O MET A 44 N SER A 32 SHEET 4 A 5 LYS A 87 MET A 92 -1 O LEU A 90 N LYS A 45 SHEET 5 A 5 LEU A 78 GLU A 84 -1 N LEU A 79 O VAL A 91 SHEET 1 B 3 GLY A 98 ASN A 99 0 SHEET 2 B 3 ILE A 144 VAL A 146 -1 O VAL A 146 N GLY A 98 SHEET 3 B 3 ILE A 152 ILE A 154 -1 O LYS A 153 N LEU A 145 SHEET 1 C 6 LYS B 11 MET B 12 0 SHEET 2 C 6 LEU B 78 GLU B 84 1 O VAL B 81 N MET B 12 SHEET 3 C 6 LYS B 87 MET B 92 -1 O VAL B 91 N LEU B 79 SHEET 4 C 6 GLY B 40 LYS B 49 -1 N ILE B 43 O MET B 92 SHEET 5 C 6 VAL B 31 HIS B 36 -1 N HIS B 36 O GLY B 40 SHEET 6 C 6 PHE B 17 LEU B 18 -1 N LEU B 18 O PHE B 35 SHEET 1 D 3 GLY B 98 ASN B 99 0 SHEET 2 D 3 ILE B 144 VAL B 146 -1 O VAL B 146 N GLY B 98 SHEET 3 D 3 ILE B 152 ILE B 154 -1 O LYS B 153 N LEU B 145 SITE 1 AC1 17 LYS A 45 ALA A 64 MET A 67 VAL A 75 SITE 2 AC1 17 VAL A 76 LEU A 78 LEU A 90 MET A 92 SITE 3 AC1 17 VAL A 134 HIS A 136 ILE A 154 ALA A 155 SITE 4 AC1 17 ASP A 156 LEU A 157 LEU A 159 SER A 161 SITE 5 AC1 17 PHE A 162 SITE 1 AC2 17 ALA B 64 MET B 67 ASN B 68 VAL B 75 SITE 2 AC2 17 VAL B 76 LEU B 78 LEU B 90 MET B 92 SITE 3 AC2 17 VAL B 134 HIS B 136 ILE B 154 ALA B 155 SITE 4 AC2 17 ASP B 156 LEU B 157 SER B 161 PHE B 162 SITE 5 AC2 17 TRP B 165 CRYST1 82.630 91.407 103.325 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012102 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009678 0.00000