data_4IUF # _entry.id 4IUF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4IUF pdb_00004iuf 10.2210/pdb4iuf/pdb NDB NA2226 ? ? RCSB RCSB077222 ? ? WWPDB D_1000077222 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-29 2 'Structure model' 1 1 2014-10-08 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.entry_id 4IUF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-01-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuo, P.H.' 1 'Doudeva, L.G.' 2 'Wang, Y.T.' 3 'Yang, W.Z.' 4 'Yuan, H.S.' 5 # _citation.id primary _citation.title 'The crystal structure of TDP-43 RRM1-DNA complex reveals the specific recognition for UG- and TG-rich nucleic acids.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 4712 _citation.page_last 4722 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24464995 _citation.pdbx_database_id_DOI 10.1093/nar/gkt1407 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuo, P.H.' 1 ? primary 'Chiang, C.H.' 2 ? primary 'Wang, Y.T.' 3 ? primary 'Doudeva, L.G.' 4 ? primary 'Yuan, H.S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TAR DNA-binding protein 43' 8986.375 1 ? ? 'RRM1 Domain (UNP residues 103-179)' ? 2 polymer syn "5'-D(*GP*TP*TP*GP*(XUA)P*GP*CP*GP*T)-3'" 2879.819 1 ? ? ? ? 3 water nat water 18.015 14 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name TDP-43 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN A ? 2 polydeoxyribonucleotide no yes '(DG)(DT)(DT)(DG)(XUA)(DG)(DC)(DG)(DT)' GTTGAGCGT B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 SER n 1 3 ASP n 1 4 LEU n 1 5 ILE n 1 6 VAL n 1 7 LEU n 1 8 GLY n 1 9 LEU n 1 10 PRO n 1 11 TRP n 1 12 LYS n 1 13 THR n 1 14 THR n 1 15 GLU n 1 16 GLN n 1 17 ASP n 1 18 LEU n 1 19 LYS n 1 20 GLU n 1 21 TYR n 1 22 PHE n 1 23 SER n 1 24 THR n 1 25 PHE n 1 26 GLY n 1 27 GLU n 1 28 VAL n 1 29 LEU n 1 30 MET n 1 31 VAL n 1 32 GLN n 1 33 VAL n 1 34 LYS n 1 35 LYS n 1 36 ASP n 1 37 LEU n 1 38 LYS n 1 39 THR n 1 40 GLY n 1 41 HIS n 1 42 SER n 1 43 LYS n 1 44 GLY n 1 45 PHE n 1 46 GLY n 1 47 PHE n 1 48 VAL n 1 49 ARG n 1 50 PHE n 1 51 THR n 1 52 GLU n 1 53 TYR n 1 54 GLU n 1 55 THR n 1 56 GLN n 1 57 VAL n 1 58 LYS n 1 59 VAL n 1 60 MET n 1 61 SER n 1 62 GLN n 1 63 ARG n 1 64 HIS n 1 65 MET n 1 66 ILE n 1 67 ASP n 1 68 GLY n 1 69 ARG n 1 70 TRP n 1 71 CYS n 1 72 ASP n 1 73 CYS n 1 74 LYS n 1 75 LEU n 1 76 PRO n 1 77 ASN n 2 1 DG n 2 2 DT n 2 3 DT n 2 4 DG n 2 5 XUA n 2 6 DG n 2 7 DC n 2 8 DG n 2 9 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TARDBP, TDP43' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XUA 'DNA linking' n ;2'-Se-methyl-2'-selenoadenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O6 P Se' 424.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 103 103 THR THR A . n A 1 2 SER 2 104 104 SER SER A . n A 1 3 ASP 3 105 105 ASP ASP A . n A 1 4 LEU 4 106 106 LEU LEU A . n A 1 5 ILE 5 107 107 ILE ILE A . n A 1 6 VAL 6 108 108 VAL VAL A . n A 1 7 LEU 7 109 109 LEU LEU A . n A 1 8 GLY 8 110 110 GLY GLY A . n A 1 9 LEU 9 111 111 LEU LEU A . n A 1 10 PRO 10 112 112 PRO PRO A . n A 1 11 TRP 11 113 113 TRP TRP A . n A 1 12 LYS 12 114 114 LYS LYS A . n A 1 13 THR 13 115 115 THR THR A . n A 1 14 THR 14 116 116 THR THR A . n A 1 15 GLU 15 117 117 GLU GLU A . n A 1 16 GLN 16 118 118 GLN GLN A . n A 1 17 ASP 17 119 119 ASP ASP A . n A 1 18 LEU 18 120 120 LEU LEU A . n A 1 19 LYS 19 121 121 LYS LYS A . n A 1 20 GLU 20 122 122 GLU GLU A . n A 1 21 TYR 21 123 123 TYR TYR A . n A 1 22 PHE 22 124 124 PHE PHE A . n A 1 23 SER 23 125 125 SER SER A . n A 1 24 THR 24 126 126 THR THR A . n A 1 25 PHE 25 127 127 PHE PHE A . n A 1 26 GLY 26 128 128 GLY GLY A . n A 1 27 GLU 27 129 129 GLU GLU A . n A 1 28 VAL 28 130 130 VAL VAL A . n A 1 29 LEU 29 131 131 LEU LEU A . n A 1 30 MET 30 132 132 MET MET A . n A 1 31 VAL 31 133 133 VAL VAL A . n A 1 32 GLN 32 134 134 GLN GLN A . n A 1 33 VAL 33 135 135 VAL VAL A . n A 1 34 LYS 34 136 136 LYS LYS A . n A 1 35 LYS 35 137 137 LYS LYS A . n A 1 36 ASP 36 138 138 ASP ASP A . n A 1 37 LEU 37 139 139 LEU LEU A . n A 1 38 LYS 38 140 140 LYS LYS A . n A 1 39 THR 39 141 141 THR THR A . n A 1 40 GLY 40 142 142 GLY GLY A . n A 1 41 HIS 41 143 143 HIS HIS A . n A 1 42 SER 42 144 144 SER SER A . n A 1 43 LYS 43 145 145 LYS LYS A . n A 1 44 GLY 44 146 146 GLY GLY A . n A 1 45 PHE 45 147 147 PHE PHE A . n A 1 46 GLY 46 148 148 GLY GLY A . n A 1 47 PHE 47 149 149 PHE PHE A . n A 1 48 VAL 48 150 150 VAL VAL A . n A 1 49 ARG 49 151 151 ARG ARG A . n A 1 50 PHE 50 152 152 PHE PHE A . n A 1 51 THR 51 153 153 THR THR A . n A 1 52 GLU 52 154 154 GLU GLU A . n A 1 53 TYR 53 155 155 TYR TYR A . n A 1 54 GLU 54 156 156 GLU GLU A . n A 1 55 THR 55 157 157 THR THR A . n A 1 56 GLN 56 158 158 GLN GLN A . n A 1 57 VAL 57 159 159 VAL VAL A . n A 1 58 LYS 58 160 160 LYS LYS A . n A 1 59 VAL 59 161 161 VAL VAL A . n A 1 60 MET 60 162 162 MET MET A . n A 1 61 SER 61 163 163 SER SER A . n A 1 62 GLN 62 164 164 GLN GLN A . n A 1 63 ARG 63 165 165 ARG ARG A . n A 1 64 HIS 64 166 166 HIS HIS A . n A 1 65 MET 65 167 167 MET MET A . n A 1 66 ILE 66 168 168 ILE ILE A . n A 1 67 ASP 67 169 169 ASP ASP A . n A 1 68 GLY 68 170 170 GLY GLY A . n A 1 69 ARG 69 171 171 ARG ARG A . n A 1 70 TRP 70 172 172 TRP TRP A . n A 1 71 CYS 71 173 173 CYS CYS A . n A 1 72 ASP 72 174 174 ASP ASP A . n A 1 73 CYS 73 175 175 CYS CYS A . n A 1 74 LYS 74 176 176 LYS LYS A . n A 1 75 LEU 75 177 177 LEU LEU A . n A 1 76 PRO 76 178 178 PRO PRO A . n A 1 77 ASN 77 179 179 ASN ASN A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DT 2 2 2 DT DT B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 XUA 5 5 5 XUA XUA B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 2 HOH HOH A . C 3 HOH 2 202 3 HOH HOH A . C 3 HOH 3 203 4 HOH HOH A . C 3 HOH 4 204 5 HOH HOH A . C 3 HOH 5 205 6 HOH HOH A . C 3 HOH 6 206 7 HOH HOH A . C 3 HOH 7 207 8 HOH HOH A . C 3 HOH 8 208 9 HOH HOH A . C 3 HOH 9 209 10 HOH HOH A . C 3 HOH 10 210 11 HOH HOH A . C 3 HOH 11 211 12 HOH HOH A . C 3 HOH 12 212 13 HOH HOH A . C 3 HOH 13 213 14 HOH HOH A . D 3 HOH 1 101 1 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8_1059 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 PHENIX . ? ? ? ? phasing ? ? ? # _cell.entry_id 4IUF _cell.length_a 71.110 _cell.length_b 71.110 _cell.length_c 101.663 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IUF _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4IUF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_percent_sol 60.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.12M CH3COONH4, 0.05M Bis-Tris, 16% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.pdbx_collection_date 2012-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13C1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13C1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.975 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4IUF _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.75 _reflns.number_obs 4328 _reflns.number_all ? _reflns.percent_possible_obs 10 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 43.5 _reflns.B_iso_Wilson_estimate 54.990 _reflns.pdbx_redundancy 17.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.75 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.554 _reflns_shell.pdbx_Rsym_value 0.554 _reflns_shell.meanI_over_sigI_obs 8.6 _reflns_shell.pdbx_redundancy 18.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4IUF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4301 _refine.ls_number_reflns_all 4328 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.336 _refine.ls_d_res_high 2.752 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.2116 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2065 _refine.ls_R_factor_R_free 0.2586 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 430 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.2025 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 24.69 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 629 _refine_hist.pdbx_number_atoms_nucleic_acid 187 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 14 _refine_hist.number_atoms_total 830 _refine_hist.d_res_high 2.752 _refine_hist.d_res_low 26.336 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 852 'X-RAY DIFFRACTION' ? f_angle_d 0.751 ? ? 1182 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.513 ? ? 318 'X-RAY DIFFRACTION' ? f_chiral_restr 0.038 ? ? 129 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 116 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.7518 3.1494 1237 0.2826 100.00 0.3665 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.1494 3.9657 1272 0.2053 100.00 0.2712 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.9657 26.3376 1362 0.1853 100.00 0.2207 . . 151 . . . . # _struct.entry_id 4IUF _struct.title 'Crystal Structure of Human TDP-43 RRM1 Domain in Complex with a Single-stranded DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IUF _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR/DNA' _struct_keywords.text 'RNA Recognition Motif, RNA binding, DNA binding, splicing factor, TRANSCRIPTION REGULATOR-DNA complex, PROTEIN-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TADBP_HUMAN Q13148 1 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 103 ? 2 PDB 4IUF 4IUF 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IUF A 1 ? 77 ? Q13148 103 ? 179 ? 103 179 2 2 4IUF B 1 ? 9 ? 4IUF 1 ? 9 ? 1 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? THR A 24 ? THR A 116 THR A 126 1 ? 11 HELX_P HELX_P2 2 GLU A 52 ? SER A 61 ? GLU A 154 SER A 163 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 4 "O3'" ? ? ? 1_555 B XUA 5 P ? ? B DG 4 B XUA 5 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale2 covale both ? B XUA 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B XUA 5 B DG 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 28 ? LYS A 35 ? VAL A 130 LYS A 137 A 2 SER A 42 ? PHE A 50 ? SER A 144 PHE A 152 A 3 LEU A 4 ? LEU A 7 ? LEU A 106 LEU A 109 A 4 ARG A 69 ? LYS A 74 ? ARG A 171 LYS A 176 A 5 HIS A 64 ? ILE A 66 ? HIS A 166 ILE A 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 29 ? N LEU A 131 O ARG A 49 ? O ARG A 151 A 2 3 O GLY A 46 ? O GLY A 148 N VAL A 6 ? N VAL A 108 A 3 4 N LEU A 7 ? N LEU A 109 O ASP A 72 ? O ASP A 174 A 4 5 O CYS A 71 ? O CYS A 173 N HIS A 64 ? N HIS A 166 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DG 4 ? ? "O3'" B DG 4 ? ? P B XUA 5 ? ? 105.77 119.70 -13.93 1.20 Y 2 1 "O3'" B DG 4 ? ? P B XUA 5 ? ? "O5'" B XUA 5 ? ? 91.95 104.00 -12.05 1.90 Y 3 1 "O3'" B DG 4 ? ? P B XUA 5 ? ? OP2 B XUA 5 ? ? 79.24 105.20 -25.96 2.20 Y 4 1 "O3'" B DG 4 ? ? P B XUA 5 ? ? OP1 B XUA 5 ? ? 150.74 110.50 40.24 1.10 Y # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id XUA _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id XUA _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details ? # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 24.6151 _pdbx_refine_tls.origin_y 44.0918 _pdbx_refine_tls.origin_z 53.7003 _pdbx_refine_tls.T[1][1] 0.4483 _pdbx_refine_tls.T[2][2] 0.3141 _pdbx_refine_tls.T[3][3] 0.3117 _pdbx_refine_tls.T[1][2] 0.0327 _pdbx_refine_tls.T[1][3] 0.0819 _pdbx_refine_tls.T[2][3] 0.0794 _pdbx_refine_tls.L[1][1] 3.7800 _pdbx_refine_tls.L[2][2] 5.5737 _pdbx_refine_tls.L[3][3] 7.1370 _pdbx_refine_tls.L[1][2] -0.6184 _pdbx_refine_tls.L[1][3] -0.1846 _pdbx_refine_tls.L[2][3] -3.6986 _pdbx_refine_tls.S[1][1] -0.0091 _pdbx_refine_tls.S[1][2] -0.1048 _pdbx_refine_tls.S[1][3] -0.3863 _pdbx_refine_tls.S[2][1] 0.1640 _pdbx_refine_tls.S[2][2] 0.1110 _pdbx_refine_tls.S[2][3] 0.1974 _pdbx_refine_tls.S[3][1] 0.2325 _pdbx_refine_tls.S[3][2] 0.1426 _pdbx_refine_tls.S[3][3] -0.0131 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 ASP N N N N 45 ASP CA C N S 46 ASP C C N N 47 ASP O O N N 48 ASP CB C N N 49 ASP CG C N N 50 ASP OD1 O N N 51 ASP OD2 O N N 52 ASP OXT O N N 53 ASP H H N N 54 ASP H2 H N N 55 ASP HA H N N 56 ASP HB2 H N N 57 ASP HB3 H N N 58 ASP HD2 H N N 59 ASP HXT H N N 60 CYS N N N N 61 CYS CA C N R 62 CYS C C N N 63 CYS O O N N 64 CYS CB C N N 65 CYS SG S N N 66 CYS OXT O N N 67 CYS H H N N 68 CYS H2 H N N 69 CYS HA H N N 70 CYS HB2 H N N 71 CYS HB3 H N N 72 CYS HG H N N 73 CYS HXT H N N 74 DC OP3 O N N 75 DC P P N N 76 DC OP1 O N N 77 DC OP2 O N N 78 DC "O5'" O N N 79 DC "C5'" C N N 80 DC "C4'" C N R 81 DC "O4'" O N N 82 DC "C3'" C N S 83 DC "O3'" O N N 84 DC "C2'" C N N 85 DC "C1'" C N R 86 DC N1 N N N 87 DC C2 C N N 88 DC O2 O N N 89 DC N3 N N N 90 DC C4 C N N 91 DC N4 N N N 92 DC C5 C N N 93 DC C6 C N N 94 DC HOP3 H N N 95 DC HOP2 H N N 96 DC "H5'" H N N 97 DC "H5''" H N N 98 DC "H4'" H N N 99 DC "H3'" H N N 100 DC "HO3'" H N N 101 DC "H2'" H N N 102 DC "H2''" H N N 103 DC "H1'" H N N 104 DC H41 H N N 105 DC H42 H N N 106 DC H5 H N N 107 DC H6 H N N 108 DG OP3 O N N 109 DG P P N N 110 DG OP1 O N N 111 DG OP2 O N N 112 DG "O5'" O N N 113 DG "C5'" C N N 114 DG "C4'" C N R 115 DG "O4'" O N N 116 DG "C3'" C N S 117 DG "O3'" O N N 118 DG "C2'" C N N 119 DG "C1'" C N R 120 DG N9 N Y N 121 DG C8 C Y N 122 DG N7 N Y N 123 DG C5 C Y N 124 DG C6 C N N 125 DG O6 O N N 126 DG N1 N N N 127 DG C2 C N N 128 DG N2 N N N 129 DG N3 N N N 130 DG C4 C Y N 131 DG HOP3 H N N 132 DG HOP2 H N N 133 DG "H5'" H N N 134 DG "H5''" H N N 135 DG "H4'" H N N 136 DG "H3'" H N N 137 DG "HO3'" H N N 138 DG "H2'" H N N 139 DG "H2''" H N N 140 DG "H1'" H N N 141 DG H8 H N N 142 DG H1 H N N 143 DG H21 H N N 144 DG H22 H N N 145 DT OP3 O N N 146 DT P P N N 147 DT OP1 O N N 148 DT OP2 O N N 149 DT "O5'" O N N 150 DT "C5'" C N N 151 DT "C4'" C N R 152 DT "O4'" O N N 153 DT "C3'" C N S 154 DT "O3'" O N N 155 DT "C2'" C N N 156 DT "C1'" C N R 157 DT N1 N N N 158 DT C2 C N N 159 DT O2 O N N 160 DT N3 N N N 161 DT C4 C N N 162 DT O4 O N N 163 DT C5 C N N 164 DT C7 C N N 165 DT C6 C N N 166 DT HOP3 H N N 167 DT HOP2 H N N 168 DT "H5'" H N N 169 DT "H5''" H N N 170 DT "H4'" H N N 171 DT "H3'" H N N 172 DT "HO3'" H N N 173 DT "H2'" H N N 174 DT "H2''" H N N 175 DT "H1'" H N N 176 DT H3 H N N 177 DT H71 H N N 178 DT H72 H N N 179 DT H73 H N N 180 DT H6 H N N 181 GLN N N N N 182 GLN CA C N S 183 GLN C C N N 184 GLN O O N N 185 GLN CB C N N 186 GLN CG C N N 187 GLN CD C N N 188 GLN OE1 O N N 189 GLN NE2 N N N 190 GLN OXT O N N 191 GLN H H N N 192 GLN H2 H N N 193 GLN HA H N N 194 GLN HB2 H N N 195 GLN HB3 H N N 196 GLN HG2 H N N 197 GLN HG3 H N N 198 GLN HE21 H N N 199 GLN HE22 H N N 200 GLN HXT H N N 201 GLU N N N N 202 GLU CA C N S 203 GLU C C N N 204 GLU O O N N 205 GLU CB C N N 206 GLU CG C N N 207 GLU CD C N N 208 GLU OE1 O N N 209 GLU OE2 O N N 210 GLU OXT O N N 211 GLU H H N N 212 GLU H2 H N N 213 GLU HA H N N 214 GLU HB2 H N N 215 GLU HB3 H N N 216 GLU HG2 H N N 217 GLU HG3 H N N 218 GLU HE2 H N N 219 GLU HXT H N N 220 GLY N N N N 221 GLY CA C N N 222 GLY C C N N 223 GLY O O N N 224 GLY OXT O N N 225 GLY H H N N 226 GLY H2 H N N 227 GLY HA2 H N N 228 GLY HA3 H N N 229 GLY HXT H N N 230 HIS N N N N 231 HIS CA C N S 232 HIS C C N N 233 HIS O O N N 234 HIS CB C N N 235 HIS CG C Y N 236 HIS ND1 N Y N 237 HIS CD2 C Y N 238 HIS CE1 C Y N 239 HIS NE2 N Y N 240 HIS OXT O N N 241 HIS H H N N 242 HIS H2 H N N 243 HIS HA H N N 244 HIS HB2 H N N 245 HIS HB3 H N N 246 HIS HD1 H N N 247 HIS HD2 H N N 248 HIS HE1 H N N 249 HIS HE2 H N N 250 HIS HXT H N N 251 HOH O O N N 252 HOH H1 H N N 253 HOH H2 H N N 254 ILE N N N N 255 ILE CA C N S 256 ILE C C N N 257 ILE O O N N 258 ILE CB C N S 259 ILE CG1 C N N 260 ILE CG2 C N N 261 ILE CD1 C N N 262 ILE OXT O N N 263 ILE H H N N 264 ILE H2 H N N 265 ILE HA H N N 266 ILE HB H N N 267 ILE HG12 H N N 268 ILE HG13 H N N 269 ILE HG21 H N N 270 ILE HG22 H N N 271 ILE HG23 H N N 272 ILE HD11 H N N 273 ILE HD12 H N N 274 ILE HD13 H N N 275 ILE HXT H N N 276 LEU N N N N 277 LEU CA C N S 278 LEU C C N N 279 LEU O O N N 280 LEU CB C N N 281 LEU CG C N N 282 LEU CD1 C N N 283 LEU CD2 C N N 284 LEU OXT O N N 285 LEU H H N N 286 LEU H2 H N N 287 LEU HA H N N 288 LEU HB2 H N N 289 LEU HB3 H N N 290 LEU HG H N N 291 LEU HD11 H N N 292 LEU HD12 H N N 293 LEU HD13 H N N 294 LEU HD21 H N N 295 LEU HD22 H N N 296 LEU HD23 H N N 297 LEU HXT H N N 298 LYS N N N N 299 LYS CA C N S 300 LYS C C N N 301 LYS O O N N 302 LYS CB C N N 303 LYS CG C N N 304 LYS CD C N N 305 LYS CE C N N 306 LYS NZ N N N 307 LYS OXT O N N 308 LYS H H N N 309 LYS H2 H N N 310 LYS HA H N N 311 LYS HB2 H N N 312 LYS HB3 H N N 313 LYS HG2 H N N 314 LYS HG3 H N N 315 LYS HD2 H N N 316 LYS HD3 H N N 317 LYS HE2 H N N 318 LYS HE3 H N N 319 LYS HZ1 H N N 320 LYS HZ2 H N N 321 LYS HZ3 H N N 322 LYS HXT H N N 323 MET N N N N 324 MET CA C N S 325 MET C C N N 326 MET O O N N 327 MET CB C N N 328 MET CG C N N 329 MET SD S N N 330 MET CE C N N 331 MET OXT O N N 332 MET H H N N 333 MET H2 H N N 334 MET HA H N N 335 MET HB2 H N N 336 MET HB3 H N N 337 MET HG2 H N N 338 MET HG3 H N N 339 MET HE1 H N N 340 MET HE2 H N N 341 MET HE3 H N N 342 MET HXT H N N 343 PHE N N N N 344 PHE CA C N S 345 PHE C C N N 346 PHE O O N N 347 PHE CB C N N 348 PHE CG C Y N 349 PHE CD1 C Y N 350 PHE CD2 C Y N 351 PHE CE1 C Y N 352 PHE CE2 C Y N 353 PHE CZ C Y N 354 PHE OXT O N N 355 PHE H H N N 356 PHE H2 H N N 357 PHE HA H N N 358 PHE HB2 H N N 359 PHE HB3 H N N 360 PHE HD1 H N N 361 PHE HD2 H N N 362 PHE HE1 H N N 363 PHE HE2 H N N 364 PHE HZ H N N 365 PHE HXT H N N 366 PRO N N N N 367 PRO CA C N S 368 PRO C C N N 369 PRO O O N N 370 PRO CB C N N 371 PRO CG C N N 372 PRO CD C N N 373 PRO OXT O N N 374 PRO H H N N 375 PRO HA H N N 376 PRO HB2 H N N 377 PRO HB3 H N N 378 PRO HG2 H N N 379 PRO HG3 H N N 380 PRO HD2 H N N 381 PRO HD3 H N N 382 PRO HXT H N N 383 SER N N N N 384 SER CA C N S 385 SER C C N N 386 SER O O N N 387 SER CB C N N 388 SER OG O N N 389 SER OXT O N N 390 SER H H N N 391 SER H2 H N N 392 SER HA H N N 393 SER HB2 H N N 394 SER HB3 H N N 395 SER HG H N N 396 SER HXT H N N 397 THR N N N N 398 THR CA C N S 399 THR C C N N 400 THR O O N N 401 THR CB C N R 402 THR OG1 O N N 403 THR CG2 C N N 404 THR OXT O N N 405 THR H H N N 406 THR H2 H N N 407 THR HA H N N 408 THR HB H N N 409 THR HG1 H N N 410 THR HG21 H N N 411 THR HG22 H N N 412 THR HG23 H N N 413 THR HXT H N N 414 TRP N N N N 415 TRP CA C N S 416 TRP C C N N 417 TRP O O N N 418 TRP CB C N N 419 TRP CG C Y N 420 TRP CD1 C Y N 421 TRP CD2 C Y N 422 TRP NE1 N Y N 423 TRP CE2 C Y N 424 TRP CE3 C Y N 425 TRP CZ2 C Y N 426 TRP CZ3 C Y N 427 TRP CH2 C Y N 428 TRP OXT O N N 429 TRP H H N N 430 TRP H2 H N N 431 TRP HA H N N 432 TRP HB2 H N N 433 TRP HB3 H N N 434 TRP HD1 H N N 435 TRP HE1 H N N 436 TRP HE3 H N N 437 TRP HZ2 H N N 438 TRP HZ3 H N N 439 TRP HH2 H N N 440 TRP HXT H N N 441 TYR N N N N 442 TYR CA C N S 443 TYR C C N N 444 TYR O O N N 445 TYR CB C N N 446 TYR CG C Y N 447 TYR CD1 C Y N 448 TYR CD2 C Y N 449 TYR CE1 C Y N 450 TYR CE2 C Y N 451 TYR CZ C Y N 452 TYR OH O N N 453 TYR OXT O N N 454 TYR H H N N 455 TYR H2 H N N 456 TYR HA H N N 457 TYR HB2 H N N 458 TYR HB3 H N N 459 TYR HD1 H N N 460 TYR HD2 H N N 461 TYR HE1 H N N 462 TYR HE2 H N N 463 TYR HH H N N 464 TYR HXT H N N 465 VAL N N N N 466 VAL CA C N S 467 VAL C C N N 468 VAL O O N N 469 VAL CB C N N 470 VAL CG1 C N N 471 VAL CG2 C N N 472 VAL OXT O N N 473 VAL H H N N 474 VAL H2 H N N 475 VAL HA H N N 476 VAL HB H N N 477 VAL HG11 H N N 478 VAL HG12 H N N 479 VAL HG13 H N N 480 VAL HG21 H N N 481 VAL HG22 H N N 482 VAL HG23 H N N 483 VAL HXT H N N 484 XUA P P N N 485 XUA N1 N Y N 486 XUA C2 C Y N 487 XUA N3 N Y N 488 XUA C4 C Y N 489 XUA C5 C Y N 490 XUA C6 C Y N 491 XUA N6 N N N 492 XUA N7 N Y N 493 XUA C8 C Y N 494 XUA N9 N Y N 495 XUA "C1'" C N R 496 XUA OP1 O N N 497 XUA "C2'" C N R 498 XUA "SE2'" SE N N 499 XUA OP2 O N N 500 XUA "C3'" C N R 501 XUA "O3'" O N N 502 XUA OP3 O N N 503 XUA "C4'" C N R 504 XUA "O4'" O N N 505 XUA "C5'" C N N 506 XUA "O5'" O N N 507 XUA "CA'" C N N 508 XUA H2 H N N 509 XUA HN6 H N N 510 XUA HN6A H N N 511 XUA H8 H N N 512 XUA "H1'" H N N 513 XUA "H2'" H N N 514 XUA HOP2 H N N 515 XUA "H3'" H N N 516 XUA "HO3'" H N N 517 XUA HOP3 H N N 518 XUA "H4'" H N N 519 XUA "H5'" H N N 520 XUA "H5''" H N N 521 XUA HA1 H N N 522 XUA HA2 H N N 523 XUA HA3 H N N 524 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 ASP N CA sing N N 43 ASP N H sing N N 44 ASP N H2 sing N N 45 ASP CA C sing N N 46 ASP CA CB sing N N 47 ASP CA HA sing N N 48 ASP C O doub N N 49 ASP C OXT sing N N 50 ASP CB CG sing N N 51 ASP CB HB2 sing N N 52 ASP CB HB3 sing N N 53 ASP CG OD1 doub N N 54 ASP CG OD2 sing N N 55 ASP OD2 HD2 sing N N 56 ASP OXT HXT sing N N 57 CYS N CA sing N N 58 CYS N H sing N N 59 CYS N H2 sing N N 60 CYS CA C sing N N 61 CYS CA CB sing N N 62 CYS CA HA sing N N 63 CYS C O doub N N 64 CYS C OXT sing N N 65 CYS CB SG sing N N 66 CYS CB HB2 sing N N 67 CYS CB HB3 sing N N 68 CYS SG HG sing N N 69 CYS OXT HXT sing N N 70 DC OP3 P sing N N 71 DC OP3 HOP3 sing N N 72 DC P OP1 doub N N 73 DC P OP2 sing N N 74 DC P "O5'" sing N N 75 DC OP2 HOP2 sing N N 76 DC "O5'" "C5'" sing N N 77 DC "C5'" "C4'" sing N N 78 DC "C5'" "H5'" sing N N 79 DC "C5'" "H5''" sing N N 80 DC "C4'" "O4'" sing N N 81 DC "C4'" "C3'" sing N N 82 DC "C4'" "H4'" sing N N 83 DC "O4'" "C1'" sing N N 84 DC "C3'" "O3'" sing N N 85 DC "C3'" "C2'" sing N N 86 DC "C3'" "H3'" sing N N 87 DC "O3'" "HO3'" sing N N 88 DC "C2'" "C1'" sing N N 89 DC "C2'" "H2'" sing N N 90 DC "C2'" "H2''" sing N N 91 DC "C1'" N1 sing N N 92 DC "C1'" "H1'" sing N N 93 DC N1 C2 sing N N 94 DC N1 C6 sing N N 95 DC C2 O2 doub N N 96 DC C2 N3 sing N N 97 DC N3 C4 doub N N 98 DC C4 N4 sing N N 99 DC C4 C5 sing N N 100 DC N4 H41 sing N N 101 DC N4 H42 sing N N 102 DC C5 C6 doub N N 103 DC C5 H5 sing N N 104 DC C6 H6 sing N N 105 DG OP3 P sing N N 106 DG OP3 HOP3 sing N N 107 DG P OP1 doub N N 108 DG P OP2 sing N N 109 DG P "O5'" sing N N 110 DG OP2 HOP2 sing N N 111 DG "O5'" "C5'" sing N N 112 DG "C5'" "C4'" sing N N 113 DG "C5'" "H5'" sing N N 114 DG "C5'" "H5''" sing N N 115 DG "C4'" "O4'" sing N N 116 DG "C4'" "C3'" sing N N 117 DG "C4'" "H4'" sing N N 118 DG "O4'" "C1'" sing N N 119 DG "C3'" "O3'" sing N N 120 DG "C3'" "C2'" sing N N 121 DG "C3'" "H3'" sing N N 122 DG "O3'" "HO3'" sing N N 123 DG "C2'" "C1'" sing N N 124 DG "C2'" "H2'" sing N N 125 DG "C2'" "H2''" sing N N 126 DG "C1'" N9 sing N N 127 DG "C1'" "H1'" sing N N 128 DG N9 C8 sing Y N 129 DG N9 C4 sing Y N 130 DG C8 N7 doub Y N 131 DG C8 H8 sing N N 132 DG N7 C5 sing Y N 133 DG C5 C6 sing N N 134 DG C5 C4 doub Y N 135 DG C6 O6 doub N N 136 DG C6 N1 sing N N 137 DG N1 C2 sing N N 138 DG N1 H1 sing N N 139 DG C2 N2 sing N N 140 DG C2 N3 doub N N 141 DG N2 H21 sing N N 142 DG N2 H22 sing N N 143 DG N3 C4 sing N N 144 DT OP3 P sing N N 145 DT OP3 HOP3 sing N N 146 DT P OP1 doub N N 147 DT P OP2 sing N N 148 DT P "O5'" sing N N 149 DT OP2 HOP2 sing N N 150 DT "O5'" "C5'" sing N N 151 DT "C5'" "C4'" sing N N 152 DT "C5'" "H5'" sing N N 153 DT "C5'" "H5''" sing N N 154 DT "C4'" "O4'" sing N N 155 DT "C4'" "C3'" sing N N 156 DT "C4'" "H4'" sing N N 157 DT "O4'" "C1'" sing N N 158 DT "C3'" "O3'" sing N N 159 DT "C3'" "C2'" sing N N 160 DT "C3'" "H3'" sing N N 161 DT "O3'" "HO3'" sing N N 162 DT "C2'" "C1'" sing N N 163 DT "C2'" "H2'" sing N N 164 DT "C2'" "H2''" sing N N 165 DT "C1'" N1 sing N N 166 DT "C1'" "H1'" sing N N 167 DT N1 C2 sing N N 168 DT N1 C6 sing N N 169 DT C2 O2 doub N N 170 DT C2 N3 sing N N 171 DT N3 C4 sing N N 172 DT N3 H3 sing N N 173 DT C4 O4 doub N N 174 DT C4 C5 sing N N 175 DT C5 C7 sing N N 176 DT C5 C6 doub N N 177 DT C7 H71 sing N N 178 DT C7 H72 sing N N 179 DT C7 H73 sing N N 180 DT C6 H6 sing N N 181 GLN N CA sing N N 182 GLN N H sing N N 183 GLN N H2 sing N N 184 GLN CA C sing N N 185 GLN CA CB sing N N 186 GLN CA HA sing N N 187 GLN C O doub N N 188 GLN C OXT sing N N 189 GLN CB CG sing N N 190 GLN CB HB2 sing N N 191 GLN CB HB3 sing N N 192 GLN CG CD sing N N 193 GLN CG HG2 sing N N 194 GLN CG HG3 sing N N 195 GLN CD OE1 doub N N 196 GLN CD NE2 sing N N 197 GLN NE2 HE21 sing N N 198 GLN NE2 HE22 sing N N 199 GLN OXT HXT sing N N 200 GLU N CA sing N N 201 GLU N H sing N N 202 GLU N H2 sing N N 203 GLU CA C sing N N 204 GLU CA CB sing N N 205 GLU CA HA sing N N 206 GLU C O doub N N 207 GLU C OXT sing N N 208 GLU CB CG sing N N 209 GLU CB HB2 sing N N 210 GLU CB HB3 sing N N 211 GLU CG CD sing N N 212 GLU CG HG2 sing N N 213 GLU CG HG3 sing N N 214 GLU CD OE1 doub N N 215 GLU CD OE2 sing N N 216 GLU OE2 HE2 sing N N 217 GLU OXT HXT sing N N 218 GLY N CA sing N N 219 GLY N H sing N N 220 GLY N H2 sing N N 221 GLY CA C sing N N 222 GLY CA HA2 sing N N 223 GLY CA HA3 sing N N 224 GLY C O doub N N 225 GLY C OXT sing N N 226 GLY OXT HXT sing N N 227 HIS N CA sing N N 228 HIS N H sing N N 229 HIS N H2 sing N N 230 HIS CA C sing N N 231 HIS CA CB sing N N 232 HIS CA HA sing N N 233 HIS C O doub N N 234 HIS C OXT sing N N 235 HIS CB CG sing N N 236 HIS CB HB2 sing N N 237 HIS CB HB3 sing N N 238 HIS CG ND1 sing Y N 239 HIS CG CD2 doub Y N 240 HIS ND1 CE1 doub Y N 241 HIS ND1 HD1 sing N N 242 HIS CD2 NE2 sing Y N 243 HIS CD2 HD2 sing N N 244 HIS CE1 NE2 sing Y N 245 HIS CE1 HE1 sing N N 246 HIS NE2 HE2 sing N N 247 HIS OXT HXT sing N N 248 HOH O H1 sing N N 249 HOH O H2 sing N N 250 ILE N CA sing N N 251 ILE N H sing N N 252 ILE N H2 sing N N 253 ILE CA C sing N N 254 ILE CA CB sing N N 255 ILE CA HA sing N N 256 ILE C O doub N N 257 ILE C OXT sing N N 258 ILE CB CG1 sing N N 259 ILE CB CG2 sing N N 260 ILE CB HB sing N N 261 ILE CG1 CD1 sing N N 262 ILE CG1 HG12 sing N N 263 ILE CG1 HG13 sing N N 264 ILE CG2 HG21 sing N N 265 ILE CG2 HG22 sing N N 266 ILE CG2 HG23 sing N N 267 ILE CD1 HD11 sing N N 268 ILE CD1 HD12 sing N N 269 ILE CD1 HD13 sing N N 270 ILE OXT HXT sing N N 271 LEU N CA sing N N 272 LEU N H sing N N 273 LEU N H2 sing N N 274 LEU CA C sing N N 275 LEU CA CB sing N N 276 LEU CA HA sing N N 277 LEU C O doub N N 278 LEU C OXT sing N N 279 LEU CB CG sing N N 280 LEU CB HB2 sing N N 281 LEU CB HB3 sing N N 282 LEU CG CD1 sing N N 283 LEU CG CD2 sing N N 284 LEU CG HG sing N N 285 LEU CD1 HD11 sing N N 286 LEU CD1 HD12 sing N N 287 LEU CD1 HD13 sing N N 288 LEU CD2 HD21 sing N N 289 LEU CD2 HD22 sing N N 290 LEU CD2 HD23 sing N N 291 LEU OXT HXT sing N N 292 LYS N CA sing N N 293 LYS N H sing N N 294 LYS N H2 sing N N 295 LYS CA C sing N N 296 LYS CA CB sing N N 297 LYS CA HA sing N N 298 LYS C O doub N N 299 LYS C OXT sing N N 300 LYS CB CG sing N N 301 LYS CB HB2 sing N N 302 LYS CB HB3 sing N N 303 LYS CG CD sing N N 304 LYS CG HG2 sing N N 305 LYS CG HG3 sing N N 306 LYS CD CE sing N N 307 LYS CD HD2 sing N N 308 LYS CD HD3 sing N N 309 LYS CE NZ sing N N 310 LYS CE HE2 sing N N 311 LYS CE HE3 sing N N 312 LYS NZ HZ1 sing N N 313 LYS NZ HZ2 sing N N 314 LYS NZ HZ3 sing N N 315 LYS OXT HXT sing N N 316 MET N CA sing N N 317 MET N H sing N N 318 MET N H2 sing N N 319 MET CA C sing N N 320 MET CA CB sing N N 321 MET CA HA sing N N 322 MET C O doub N N 323 MET C OXT sing N N 324 MET CB CG sing N N 325 MET CB HB2 sing N N 326 MET CB HB3 sing N N 327 MET CG SD sing N N 328 MET CG HG2 sing N N 329 MET CG HG3 sing N N 330 MET SD CE sing N N 331 MET CE HE1 sing N N 332 MET CE HE2 sing N N 333 MET CE HE3 sing N N 334 MET OXT HXT sing N N 335 PHE N CA sing N N 336 PHE N H sing N N 337 PHE N H2 sing N N 338 PHE CA C sing N N 339 PHE CA CB sing N N 340 PHE CA HA sing N N 341 PHE C O doub N N 342 PHE C OXT sing N N 343 PHE CB CG sing N N 344 PHE CB HB2 sing N N 345 PHE CB HB3 sing N N 346 PHE CG CD1 doub Y N 347 PHE CG CD2 sing Y N 348 PHE CD1 CE1 sing Y N 349 PHE CD1 HD1 sing N N 350 PHE CD2 CE2 doub Y N 351 PHE CD2 HD2 sing N N 352 PHE CE1 CZ doub Y N 353 PHE CE1 HE1 sing N N 354 PHE CE2 CZ sing Y N 355 PHE CE2 HE2 sing N N 356 PHE CZ HZ sing N N 357 PHE OXT HXT sing N N 358 PRO N CA sing N N 359 PRO N CD sing N N 360 PRO N H sing N N 361 PRO CA C sing N N 362 PRO CA CB sing N N 363 PRO CA HA sing N N 364 PRO C O doub N N 365 PRO C OXT sing N N 366 PRO CB CG sing N N 367 PRO CB HB2 sing N N 368 PRO CB HB3 sing N N 369 PRO CG CD sing N N 370 PRO CG HG2 sing N N 371 PRO CG HG3 sing N N 372 PRO CD HD2 sing N N 373 PRO CD HD3 sing N N 374 PRO OXT HXT sing N N 375 SER N CA sing N N 376 SER N H sing N N 377 SER N H2 sing N N 378 SER CA C sing N N 379 SER CA CB sing N N 380 SER CA HA sing N N 381 SER C O doub N N 382 SER C OXT sing N N 383 SER CB OG sing N N 384 SER CB HB2 sing N N 385 SER CB HB3 sing N N 386 SER OG HG sing N N 387 SER OXT HXT sing N N 388 THR N CA sing N N 389 THR N H sing N N 390 THR N H2 sing N N 391 THR CA C sing N N 392 THR CA CB sing N N 393 THR CA HA sing N N 394 THR C O doub N N 395 THR C OXT sing N N 396 THR CB OG1 sing N N 397 THR CB CG2 sing N N 398 THR CB HB sing N N 399 THR OG1 HG1 sing N N 400 THR CG2 HG21 sing N N 401 THR CG2 HG22 sing N N 402 THR CG2 HG23 sing N N 403 THR OXT HXT sing N N 404 TRP N CA sing N N 405 TRP N H sing N N 406 TRP N H2 sing N N 407 TRP CA C sing N N 408 TRP CA CB sing N N 409 TRP CA HA sing N N 410 TRP C O doub N N 411 TRP C OXT sing N N 412 TRP CB CG sing N N 413 TRP CB HB2 sing N N 414 TRP CB HB3 sing N N 415 TRP CG CD1 doub Y N 416 TRP CG CD2 sing Y N 417 TRP CD1 NE1 sing Y N 418 TRP CD1 HD1 sing N N 419 TRP CD2 CE2 doub Y N 420 TRP CD2 CE3 sing Y N 421 TRP NE1 CE2 sing Y N 422 TRP NE1 HE1 sing N N 423 TRP CE2 CZ2 sing Y N 424 TRP CE3 CZ3 doub Y N 425 TRP CE3 HE3 sing N N 426 TRP CZ2 CH2 doub Y N 427 TRP CZ2 HZ2 sing N N 428 TRP CZ3 CH2 sing Y N 429 TRP CZ3 HZ3 sing N N 430 TRP CH2 HH2 sing N N 431 TRP OXT HXT sing N N 432 TYR N CA sing N N 433 TYR N H sing N N 434 TYR N H2 sing N N 435 TYR CA C sing N N 436 TYR CA CB sing N N 437 TYR CA HA sing N N 438 TYR C O doub N N 439 TYR C OXT sing N N 440 TYR CB CG sing N N 441 TYR CB HB2 sing N N 442 TYR CB HB3 sing N N 443 TYR CG CD1 doub Y N 444 TYR CG CD2 sing Y N 445 TYR CD1 CE1 sing Y N 446 TYR CD1 HD1 sing N N 447 TYR CD2 CE2 doub Y N 448 TYR CD2 HD2 sing N N 449 TYR CE1 CZ doub Y N 450 TYR CE1 HE1 sing N N 451 TYR CE2 CZ sing Y N 452 TYR CE2 HE2 sing N N 453 TYR CZ OH sing N N 454 TYR OH HH sing N N 455 TYR OXT HXT sing N N 456 VAL N CA sing N N 457 VAL N H sing N N 458 VAL N H2 sing N N 459 VAL CA C sing N N 460 VAL CA CB sing N N 461 VAL CA HA sing N N 462 VAL C O doub N N 463 VAL C OXT sing N N 464 VAL CB CG1 sing N N 465 VAL CB CG2 sing N N 466 VAL CB HB sing N N 467 VAL CG1 HG11 sing N N 468 VAL CG1 HG12 sing N N 469 VAL CG1 HG13 sing N N 470 VAL CG2 HG21 sing N N 471 VAL CG2 HG22 sing N N 472 VAL CG2 HG23 sing N N 473 VAL OXT HXT sing N N 474 XUA OP1 P doub N N 475 XUA "O5'" P sing N N 476 XUA P OP2 sing N N 477 XUA P OP3 sing N N 478 XUA C2 N1 doub Y N 479 XUA C6 N1 sing Y N 480 XUA N3 C2 sing Y N 481 XUA C2 H2 sing N N 482 XUA N3 C4 doub Y N 483 XUA N9 C4 sing Y N 484 XUA C4 C5 sing Y N 485 XUA N7 C5 sing Y N 486 XUA C5 C6 doub Y N 487 XUA C6 N6 sing N N 488 XUA N6 HN6 sing N N 489 XUA N6 HN6A sing N N 490 XUA C8 N7 doub Y N 491 XUA N9 C8 sing Y N 492 XUA C8 H8 sing N N 493 XUA "C1'" N9 sing N N 494 XUA "C2'" "C1'" sing N N 495 XUA "O4'" "C1'" sing N N 496 XUA "C1'" "H1'" sing N N 497 XUA "SE2'" "C2'" sing N N 498 XUA "C3'" "C2'" sing N N 499 XUA "C2'" "H2'" sing N N 500 XUA "SE2'" "CA'" sing N N 501 XUA OP2 HOP2 sing N N 502 XUA "O3'" "C3'" sing N N 503 XUA "C3'" "C4'" sing N N 504 XUA "C3'" "H3'" sing N N 505 XUA "O3'" "HO3'" sing N N 506 XUA OP3 HOP3 sing N N 507 XUA "C4'" "C5'" sing N N 508 XUA "C4'" "O4'" sing N N 509 XUA "C4'" "H4'" sing N N 510 XUA "C5'" "O5'" sing N N 511 XUA "C5'" "H5'" sing N N 512 XUA "C5'" "H5''" sing N N 513 XUA "CA'" HA1 sing N N 514 XUA "CA'" HA2 sing N N 515 XUA "CA'" HA3 sing N N 516 # _ndb_struct_conf_na.entry_id 4IUF _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 B DT 3 12_565 -0.811 -6.048 1.170 -36.906 26.700 -130.683 1 B_DG1:DT3_B B 1 ? B 3 ? ? ? 1 B DG 1 1_555 B DT 3 1_555 -0.811 -6.048 1.170 -36.906 26.699 -130.683 2 B_DG1:DT3_B B 1 ? B 3 ? ? ? # _atom_sites.entry_id 4IUF _atom_sites.fract_transf_matrix[1][1] 0.014063 _atom_sites.fract_transf_matrix[1][2] 0.008119 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016238 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009836 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S SE # loop_