HEADER GENE REGULATION 21-JAN-13 4IUR TITLE CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN IN COMPLEX WITH H3K9ME3 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHH1 SAWADEE; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: SHH1 SAWADEE DOMAIN (UNP RESIDUES 125-258); COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2, H3(1-15)K9ME3; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: H3(1-15) K9ME3 PEPTIDE (UNP RESIDUES 2-16); COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: F9L1.16, AT1G15215, AT1G15215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS TANDEM TUDOR, ZINC FINGER, H3K9ME3, MEDIATE INTERACTION, HISTONE, KEYWDS 2 METHYLATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR D.J.PATEL,J.DU REVDAT 4 20-SEP-23 4IUR 1 REMARK SEQADV LINK REVDAT 3 10-JUL-13 4IUR 1 JRNL REVDAT 2 15-MAY-13 4IUR 1 JRNL REVDAT 1 01-MAY-13 4IUR 0 JRNL AUTH J.A.LAW,J.DU,C.J.HALE,S.FENG,K.KRAJEWSKI,A.M.PALANCA, JRNL AUTH 2 B.D.STRAHL,D.J.PATEL,S.E.JACOBSEN JRNL TITL POLYMERASE IV OCCUPANCY AT RNA-DIRECTED DNA METHYLATION JRNL TITL 2 SITES REQUIRES SHH1. JRNL REF NATURE V. 498 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23636332 JRNL DOI 10.1038/NATURE12178 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5771 - 3.9690 1.00 2951 144 0.1823 0.1929 REMARK 3 2 3.9690 - 3.1507 1.00 2890 147 0.2134 0.2393 REMARK 3 3 3.1507 - 2.7525 1.00 2875 138 0.2458 0.3662 REMARK 3 4 2.7525 - 2.5009 1.00 2877 151 0.3115 0.3954 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 29.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.99950 REMARK 3 B22 (A**2) : 12.16520 REMARK 3 B33 (A**2) : -0.16570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.14210 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2334 REMARK 3 ANGLE : 0.946 3148 REMARK 3 CHIRALITY : 0.063 342 REMARK 3 PLANARITY : 0.003 408 REMARK 3 DIHEDRAL : 14.748 898 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 124:155) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2735 1.9161 -19.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2159 REMARK 3 T33: 0.1796 T12: 0.0696 REMARK 3 T13: 0.0316 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.8339 L22: 0.5323 REMARK 3 L33: 0.1137 L12: -0.5310 REMARK 3 L13: 0.0592 L23: 0.0942 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: -0.2588 S13: 0.1370 REMARK 3 S21: -0.1311 S22: 0.0646 S23: -0.1074 REMARK 3 S31: 0.1265 S32: 0.1665 S33: 0.1156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 156:181) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5655 -0.1393 -17.7361 REMARK 3 T TENSOR REMARK 3 T11: 0.2403 T22: 0.2210 REMARK 3 T33: 0.2972 T12: 0.0373 REMARK 3 T13: -0.0087 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 0.6585 L22: 0.3337 REMARK 3 L33: 0.2427 L12: 0.3590 REMARK 3 L13: -0.0979 L23: -0.1640 REMARK 3 S TENSOR REMARK 3 S11: -0.1310 S12: -0.2832 S13: 0.0028 REMARK 3 S21: 0.0793 S22: 0.0655 S23: 0.1721 REMARK 3 S31: -0.0411 S32: 0.0642 S33: 0.0404 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 182:209) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3512 -1.9753 -10.5338 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.5478 REMARK 3 T33: -0.0336 T12: 0.0252 REMARK 3 T13: -0.1237 T23: 0.2145 REMARK 3 L TENSOR REMARK 3 L11: 0.3269 L22: 0.5728 REMARK 3 L33: 0.3674 L12: -0.0637 REMARK 3 L13: 0.3484 L23: -0.2417 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.4398 S13: 0.0347 REMARK 3 S21: 0.2264 S22: -0.2838 S23: -0.5720 REMARK 3 S31: -0.2054 S32: 0.2859 S33: -0.0864 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 210:221) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7990 3.3712 -7.6901 REMARK 3 T TENSOR REMARK 3 T11: 0.3462 T22: 0.4831 REMARK 3 T33: 0.2866 T12: -0.0682 REMARK 3 T13: -0.0196 T23: 0.1100 REMARK 3 L TENSOR REMARK 3 L11: 0.2436 L22: 0.7031 REMARK 3 L33: 0.1513 L12: 0.3087 REMARK 3 L13: -0.1058 L23: -0.2160 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.2526 S13: -0.2220 REMARK 3 S21: 0.1507 S22: -0.0089 S23: -0.1595 REMARK 3 S31: -0.0417 S32: 0.3017 S33: 0.0993 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 222:232) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1766 -8.5861 -8.6128 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.7875 REMARK 3 T33: 0.6160 T12: 0.0104 REMARK 3 T13: 0.0100 T23: 0.2296 REMARK 3 L TENSOR REMARK 3 L11: 0.0392 L22: 0.4216 REMARK 3 L33: 0.2164 L12: 0.1228 REMARK 3 L13: -0.0922 L23: -0.2992 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: -0.1092 S13: -0.0634 REMARK 3 S21: 0.0774 S22: -0.1722 S23: -0.3821 REMARK 3 S31: -0.0166 S32: 0.2577 S33: 0.1906 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 233:256) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0575 2.6711 -7.0739 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.5202 REMARK 3 T33: 0.2598 T12: -0.0385 REMARK 3 T13: -0.0642 T23: 0.0924 REMARK 3 L TENSOR REMARK 3 L11: 0.2453 L22: 0.1586 REMARK 3 L33: 0.4487 L12: 0.0669 REMARK 3 L13: 0.2336 L23: -0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: -0.2763 S13: 0.1523 REMARK 3 S21: 0.2917 S22: -0.1011 S23: -0.0514 REMARK 3 S31: -0.0743 S32: 0.1217 S33: 0.1070 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -28.0571 -7.4390 -6.3475 REMARK 3 T TENSOR REMARK 3 T11: 0.3015 T22: 0.4828 REMARK 3 T33: 0.3609 T12: 0.0085 REMARK 3 T13: -0.1028 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.7419 L22: 1.2475 REMARK 3 L33: 1.5138 L12: -0.0047 REMARK 3 L13: -0.2142 L23: 0.4622 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.1943 S13: 0.2807 REMARK 3 S21: 0.0558 S22: -0.1272 S23: -0.1200 REMARK 3 S31: 0.4673 S32: 0.0531 S33: 0.0863 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 125:145) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5500 20.3884 -22.8286 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.2816 REMARK 3 T33: 0.3313 T12: -0.0624 REMARK 3 T13: 0.0125 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.1816 L22: 0.3569 REMARK 3 L33: 0.4550 L12: -0.2070 REMARK 3 L13: 0.2453 L23: -0.1946 REMARK 3 S TENSOR REMARK 3 S11: 0.1112 S12: -0.0762 S13: -0.0898 REMARK 3 S21: -0.0787 S22: -0.2896 S23: -0.1222 REMARK 3 S31: 0.0820 S32: 0.0185 S33: 0.0967 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 146:162) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5156 23.2740 -23.1103 REMARK 3 T TENSOR REMARK 3 T11: 0.1152 T22: 0.1389 REMARK 3 T33: 0.2335 T12: 0.0066 REMARK 3 T13: 0.0090 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.6361 L22: 0.8836 REMARK 3 L33: 1.6153 L12: -0.5370 REMARK 3 L13: 0.3255 L23: 0.5148 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: -0.3224 S13: -0.1225 REMARK 3 S21: -0.0682 S22: 0.1237 S23: -0.1940 REMARK 3 S31: -0.1648 S32: -0.3526 S33: -0.0291 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 163:170) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1866 10.1468 -27.9292 REMARK 3 T TENSOR REMARK 3 T11: 0.5855 T22: 0.4292 REMARK 3 T33: 0.9653 T12: -0.0241 REMARK 3 T13: 0.1263 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.4527 L22: 0.1338 REMARK 3 L33: 1.0036 L12: 0.1039 REMARK 3 L13: 0.0861 L23: 0.3495 REMARK 3 S TENSOR REMARK 3 S11: -0.1791 S12: 0.0568 S13: -0.2330 REMARK 3 S21: -0.2437 S22: 0.0076 S23: -0.4534 REMARK 3 S31: 0.4694 S32: 0.0262 S33: 0.1674 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 171:208) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7841 22.3807 -17.4877 REMARK 3 T TENSOR REMARK 3 T11: 0.2455 T22: 0.2573 REMARK 3 T33: 0.1731 T12: 0.0060 REMARK 3 T13: 0.0026 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.9252 L22: 0.1313 REMARK 3 L33: 0.4043 L12: -0.0858 REMARK 3 L13: 0.2116 L23: 0.2179 REMARK 3 S TENSOR REMARK 3 S11: -0.2748 S12: -0.2878 S13: 0.2023 REMARK 3 S21: 0.0315 S22: 0.1946 S23: -0.0044 REMARK 3 S31: 0.1721 S32: 0.0602 S33: -0.0032 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 209:221) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3435 19.5588 -10.4307 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.2503 REMARK 3 T33: 0.1947 T12: 0.0416 REMARK 3 T13: 0.0161 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.4185 L22: 0.5269 REMARK 3 L33: 0.1527 L12: -0.0369 REMARK 3 L13: 0.1253 L23: 0.2107 REMARK 3 S TENSOR REMARK 3 S11: -0.0963 S12: -0.4106 S13: 0.0124 REMARK 3 S21: 0.2817 S22: -0.0417 S23: 0.1916 REMARK 3 S31: 0.1798 S32: -0.1755 S33: 0.0475 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 222:257) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8697 20.8931 -12.6593 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.3681 REMARK 3 T33: 0.2330 T12: 0.0173 REMARK 3 T13: -0.0345 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.2616 L22: 0.5160 REMARK 3 L33: 1.2107 L12: -0.7109 REMARK 3 L13: -0.9856 L23: 0.7555 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.9903 S13: 0.0219 REMARK 3 S21: 0.1720 S22: 0.1739 S23: -0.1578 REMARK 3 S31: 0.4165 S32: 0.6226 S33: -0.0573 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : 0.54100 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4F, 20% PEG 3350, 7.6 MM 4 REMARK 280 -CYCLOHEXYL-1-BUTYL-D-MALTOSIDE , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.07600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 257 REMARK 465 GLU B 258 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 SER A 124 REMARK 465 GLU A 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 136 -62.47 167.73 REMARK 500 TYR B 137 6.48 84.33 REMARK 500 ASN B 242 -0.01 78.43 REMARK 500 GLU A 207 -133.35 54.69 REMARK 500 ASP A 226 -160.49 -109.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CVM B 302 REMARK 610 CVM A 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 HIS B 225 NE2 81.0 REMARK 620 3 CYS B 230 SG 108.3 99.7 REMARK 620 4 CYS B 232 SG 120.4 135.1 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 HIS A 225 NE2 107.2 REMARK 620 3 CYS A 230 SG 132.9 100.6 REMARK 620 4 CYS A 232 SG 114.6 98.0 97.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IUP RELATED DB: PDB REMARK 900 RELATED ID: 4IUQ RELATED DB: PDB REMARK 900 RELATED ID: 4IUT RELATED DB: PDB REMARK 900 RELATED ID: 4IUU RELATED DB: PDB REMARK 900 RELATED ID: 4IUV RELATED DB: PDB DBREF 4IUR B 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUR C 1 15 UNP P59226 H32_ARATH 2 16 DBREF 4IUR A 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 SEQADV 4IUR SER B 124 UNP Q9XI47 EXPRESSION TAG SEQADV 4IUR SER A 124 UNP Q9XI47 EXPRESSION TAG SEQRES 1 B 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 B 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 B 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 B 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 B 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 B 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 B 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 B 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 B 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 B 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 B 135 ARG ARG PRO GLU GLU SEQRES 1 C 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY SEQRES 2 C 15 LYS ALA SEQRES 1 A 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 A 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 A 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 A 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 A 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 A 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 A 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 A 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 A 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 A 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 A 135 ARG ARG PRO GLU GLU MODRES 4IUR M3L C 9 LYS N-TRIMETHYLLYSINE HET M3L C 9 12 HET ZN B 301 1 HET CVM B 302 22 HET ZN A 301 1 HET CVM A 302 22 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CVM 2(C22 H40 O11) FORMUL 8 HOH *60(H2 O) HELIX 1 1 ASP B 166 ASP B 170 5 5 HELIX 2 2 VAL B 175 SER B 178 1 4 HELIX 3 3 GLU B 187 VAL B 194 5 8 HELIX 4 4 GLY B 248 GLU B 250 5 3 HELIX 5 5 VAL A 175 SER A 178 1 4 HELIX 6 6 GLU A 187 VAL A 194 5 8 HELIX 7 7 GLY A 248 GLU A 250 5 3 SHEET 1 A 5 GLU B 171 ASN B 174 0 SHEET 2 A 5 LEU B 156 PHE B 162 -1 N VAL B 158 O VAL B 173 SHEET 3 A 5 TRP B 139 VAL B 150 -1 N SER B 143 O ARG B 161 SHEET 4 A 5 PHE B 129 LYS B 132 -1 N ALA B 131 O TYR B 140 SHEET 5 A 5 VAL B 179 GLU B 181 -1 O ARG B 180 N GLU B 130 SHEET 1 B 6 ILE B 184 PRO B 185 0 SHEET 2 B 6 ILE B 252 ARG B 254 -1 O ARG B 254 N ILE B 184 SHEET 3 B 6 LEU B 199 GLU B 205 -1 N LEU B 201 O CYS B 253 SHEET 4 B 6 ALA B 210 LYS B 221 -1 O CYS B 213 N CYS B 202 SHEET 5 B 6 VAL B 233 TYR B 238 -1 O LEU B 235 N ASN B 219 SHEET 6 B 6 GLU B 244 LEU B 247 -1 O LEU B 247 N PHE B 234 SHEET 1 C 5 GLU A 171 ASN A 174 0 SHEET 2 C 5 LEU A 156 PHE A 162 -1 N VAL A 160 O GLU A 171 SHEET 3 C 5 TRP A 139 VAL A 150 -1 N THR A 147 O ARG A 159 SHEET 4 C 5 PHE A 129 LYS A 132 -1 N ALA A 131 O TYR A 140 SHEET 5 C 5 VAL A 179 GLU A 181 -1 O ARG A 180 N GLU A 130 SHEET 1 D 6 ILE A 184 PRO A 185 0 SHEET 2 D 6 ILE A 252 ARG A 254 -1 O ARG A 254 N ILE A 184 SHEET 3 D 6 LEU A 199 ARG A 206 -1 N LEU A 201 O CYS A 253 SHEET 4 D 6 GLN A 209 LYS A 221 -1 O LEU A 211 N GLN A 204 SHEET 5 D 6 VAL A 233 TYR A 238 -1 O LEU A 235 N ASN A 219 SHEET 6 D 6 GLU A 244 LEU A 247 -1 O GLU A 245 N VAL A 236 LINK C ARG C 8 N M3L C 9 1555 1555 1.32 LINK C M3L C 9 N SER C 10 1555 1555 1.32 LINK SG CYS B 191 ZN ZN B 301 1555 1555 2.70 LINK NE2 HIS B 225 ZN ZN B 301 1555 1555 2.32 LINK SG CYS B 230 ZN ZN B 301 1555 1555 2.66 LINK SG CYS B 232 ZN ZN B 301 1555 1555 2.59 LINK SG CYS A 191 ZN ZN A 301 1555 1555 2.76 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.31 LINK SG CYS A 230 ZN ZN A 301 1555 1555 2.57 LINK SG CYS A 232 ZN ZN A 301 1555 1555 2.47 CISPEP 1 ASP A 166 ASN A 167 0 -7.32 SITE 1 AC1 4 CYS B 191 HIS B 225 CYS B 230 CYS B 232 SITE 1 AC2 5 PHE B 129 PHE B 145 VAL B 175 LYS B 176 SITE 2 AC2 5 VAL B 179 SITE 1 AC3 4 CYS A 191 HIS A 225 CYS A 230 CYS A 232 SITE 1 AC4 3 PHE A 145 LYS A 176 VAL A 179 CRYST1 53.341 56.152 58.936 90.00 93.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018747 0.000000 0.000990 0.00000 SCALE2 0.000000 0.017809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016991 0.00000