HEADER GENE REGULATION 21-JAN-13 4IUT TITLE CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN IN COMPLEX WITH H3K9ME2 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAWADEE HOMEODOMAIN HOMOLOG 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SHH1 SAWADEE DOMAIN (UNP RESIDUES 125-258); COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2, H3(1-15)K9ME3; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: H3(1-15) K9ME2 PEPTIDE (UNP RESIDUES 2-16); COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT1G15215, F9L1.16; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS TANDEM TUDOR, ZINC FINGER, H3K9ME2, MEDIATE INTERACTION, HISTONE, KEYWDS 2 METHYLATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.DU,D.J.PATEL REVDAT 4 20-SEP-23 4IUT 1 REMARK SEQADV LINK REVDAT 3 10-JUL-13 4IUT 1 JRNL REVDAT 2 15-MAY-13 4IUT 1 JRNL REVDAT 1 01-MAY-13 4IUT 0 JRNL AUTH J.A.LAW,J.DU,C.J.HALE,S.FENG,K.KRAJEWSKI,A.M.PALANCA, JRNL AUTH 2 B.D.STRAHL,D.J.PATEL,S.E.JACOBSEN JRNL TITL POLYMERASE IV OCCUPANCY AT RNA-DIRECTED DNA METHYLATION JRNL TITL 2 SITES REQUIRES SHH1. JRNL REF NATURE V. 498 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23636332 JRNL DOI 10.1038/NATURE12178 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 9716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8768 - 3.8940 0.99 3131 161 0.1731 0.2140 REMARK 3 2 3.8940 - 3.0911 0.99 3096 147 0.2037 0.2441 REMARK 3 3 3.0911 - 2.7005 0.99 3020 161 0.2656 0.3271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 18.09 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.810 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.17180 REMARK 3 B22 (A**2) : 7.46690 REMARK 3 B33 (A**2) : -4.29520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.06700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2342 REMARK 3 ANGLE : 1.538 3157 REMARK 3 CHIRALITY : 0.062 343 REMARK 3 PLANARITY : 0.002 410 REMARK 3 DIHEDRAL : 14.880 901 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 125:145) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6478 -8.4234 22.8444 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.1165 REMARK 3 T33: 0.2258 T12: 0.0445 REMARK 3 T13: 0.0239 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 1.5352 L22: 3.0295 REMARK 3 L33: 7.2826 L12: 2.0802 REMARK 3 L13: 1.6845 L23: 1.3854 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.0645 S13: -0.3355 REMARK 3 S21: 0.0380 S22: -0.1304 S23: 0.0181 REMARK 3 S31: 0.4760 S32: 0.3179 S33: 0.0268 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 146:155) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8774 -3.0508 21.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.2055 REMARK 3 T33: 0.2401 T12: -0.0298 REMARK 3 T13: -0.0573 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 8.5212 L22: 2.1994 REMARK 3 L33: 9.0126 L12: 1.0860 REMARK 3 L13: -5.1120 L23: -0.3713 REMARK 3 S TENSOR REMARK 3 S11: 0.2926 S12: 0.9290 S13: 0.5085 REMARK 3 S21: -0.4382 S22: 0.2913 S23: 0.3941 REMARK 3 S31: -0.1989 S32: -0.2298 S33: -0.3799 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:162) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9111 -8.7478 25.4814 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.1506 REMARK 3 T33: 0.3066 T12: 0.0157 REMARK 3 T13: -0.0502 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.0413 L22: 5.2522 REMARK 3 L33: 7.2871 L12: 2.7632 REMARK 3 L13: -3.5125 L23: -2.8527 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: 0.2530 S13: -0.7283 REMARK 3 S21: 0.0671 S22: 0.0715 S23: 0.1748 REMARK 3 S31: 0.1522 S32: -0.1089 S33: -0.0107 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 163:170) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4309 -18.6612 27.8146 REMARK 3 T TENSOR REMARK 3 T11: 0.6309 T22: 0.5478 REMARK 3 T33: 0.8347 T12: 0.0211 REMARK 3 T13: -0.0480 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.4050 L22: 3.1393 REMARK 3 L33: -0.0055 L12: 1.1236 REMARK 3 L13: -0.0591 L23: -0.1330 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: -0.1345 S13: -2.4713 REMARK 3 S21: 0.7244 S22: 0.1437 S23: 0.4087 REMARK 3 S31: 2.0585 S32: -0.2080 S33: 0.0763 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 171:181) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5286 -4.3045 20.3870 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.1337 REMARK 3 T33: 0.1506 T12: 0.0057 REMARK 3 T13: -0.0203 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 2.0707 L22: 3.2735 REMARK 3 L33: 3.6017 L12: -2.5628 REMARK 3 L13: 2.5291 L23: -0.9840 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: 0.2649 S13: 0.4368 REMARK 3 S21: 0.0709 S22: -0.3570 S23: 0.1682 REMARK 3 S31: 0.2181 S32: 0.3352 S33: 0.1628 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 182:209) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3792 -8.0522 16.1374 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.1504 REMARK 3 T33: 0.0837 T12: -0.0759 REMARK 3 T13: 0.0206 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 5.4291 L22: 1.9174 REMARK 3 L33: 3.5934 L12: 0.1888 REMARK 3 L13: 1.5778 L23: -1.1711 REMARK 3 S TENSOR REMARK 3 S11: -0.1884 S12: 0.2227 S13: -0.0363 REMARK 3 S21: -0.1844 S22: 0.1051 S23: 0.0330 REMARK 3 S31: 0.3384 S32: -0.2025 S33: 0.0171 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 210:221) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0651 -8.1533 10.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.0912 REMARK 3 T33: 0.1972 T12: -0.0482 REMARK 3 T13: -0.0451 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 4.8239 L22: 3.4550 REMARK 3 L33: 4.0316 L12: -2.2474 REMARK 3 L13: 0.1951 L23: -1.5985 REMARK 3 S TENSOR REMARK 3 S11: 0.2688 S12: 0.4778 S13: -0.0290 REMARK 3 S21: -0.6463 S22: -0.1346 S23: 0.1611 REMARK 3 S31: 0.3595 S32: 0.4004 S33: -0.1924 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 222:232) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3003 -7.8738 16.8247 REMARK 3 T TENSOR REMARK 3 T11: -0.3124 T22: 0.5191 REMARK 3 T33: 0.4029 T12: -0.1992 REMARK 3 T13: -0.0607 T23: 0.1589 REMARK 3 L TENSOR REMARK 3 L11: 3.9771 L22: 3.7951 REMARK 3 L33: 6.4934 L12: 0.1260 REMARK 3 L13: -1.3260 L23: -1.6345 REMARK 3 S TENSOR REMARK 3 S11: 0.6328 S12: 0.2963 S13: -0.2264 REMARK 3 S21: -0.4483 S22: 0.1810 S23: 0.5707 REMARK 3 S31: 0.4720 S32: -1.1180 S33: -0.2367 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 233:238) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0159 -8.5392 7.0304 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.2298 REMARK 3 T33: 0.1813 T12: -0.0383 REMARK 3 T13: -0.0835 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.0013 L22: 6.4818 REMARK 3 L33: 5.9009 L12: -4.1526 REMARK 3 L13: 0.7871 L23: 2.7390 REMARK 3 S TENSOR REMARK 3 S11: 0.3563 S12: 0.8478 S13: 0.3148 REMARK 3 S21: -0.6738 S22: 0.1955 S23: -0.2213 REMARK 3 S31: 0.0566 S32: -0.0638 S33: -0.2951 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 239:257) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4430 -8.0263 12.4414 REMARK 3 T TENSOR REMARK 3 T11: 0.2741 T22: 0.1580 REMARK 3 T33: 0.2172 T12: -0.0051 REMARK 3 T13: -0.0287 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 4.4103 L22: 2.3086 REMARK 3 L33: 3.9025 L12: -0.8051 REMARK 3 L13: -0.1448 L23: -0.0352 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: 0.4440 S13: 0.1209 REMARK 3 S21: -0.3084 S22: 0.0983 S23: -0.0647 REMARK 3 S31: 0.3078 S32: -0.0637 S33: -0.1186 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 124:132) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0115 -32.3398 23.3703 REMARK 3 T TENSOR REMARK 3 T11: -0.4047 T22: 0.4216 REMARK 3 T33: -0.0550 T12: -0.3012 REMARK 3 T13: 0.5398 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 5.7723 L22: 0.1117 REMARK 3 L33: 0.5721 L12: -0.9626 REMARK 3 L13: -1.8032 L23: 0.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -0.5914 S13: -0.3625 REMARK 3 S21: 0.3595 S22: 0.1654 S23: -0.4653 REMARK 3 S31: 0.4088 S32: 0.0183 S33: 0.0908 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 133:145) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2630 -29.1919 13.5849 REMARK 3 T TENSOR REMARK 3 T11: 0.1781 T22: 0.2451 REMARK 3 T33: 0.3090 T12: -0.1044 REMARK 3 T13: 0.0382 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 3.2167 L22: 7.5454 REMARK 3 L33: 8.9485 L12: -0.9798 REMARK 3 L13: 3.8473 L23: -5.1118 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.2810 S13: 0.1795 REMARK 3 S21: -0.2696 S22: -0.0283 S23: 0.2310 REMARK 3 S31: -0.0999 S32: 0.6169 S33: 0.1618 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 146:162) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1743 -23.5798 22.3051 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.1792 REMARK 3 T33: 0.2017 T12: -0.0673 REMARK 3 T13: 0.0373 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.9676 L22: 1.7807 REMARK 3 L33: 0.0131 L12: 1.2838 REMARK 3 L13: 0.4369 L23: 0.4830 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: 0.3024 S13: -0.0121 REMARK 3 S21: -0.1289 S22: 0.0608 S23: -0.0566 REMARK 3 S31: 0.1180 S32: 0.0111 S33: 0.1026 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 163:181) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8146 -29.2037 16.9437 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.2264 REMARK 3 T33: 0.1224 T12: -0.0513 REMARK 3 T13: 0.0368 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.9716 L22: 4.5812 REMARK 3 L33: 2.8097 L12: 1.3822 REMARK 3 L13: 1.8660 L23: -1.2409 REMARK 3 S TENSOR REMARK 3 S11: -0.1473 S12: 0.6377 S13: 0.2253 REMARK 3 S21: 0.1329 S22: 0.0709 S23: -0.1456 REMARK 3 S31: -0.0357 S32: 0.2765 S33: 0.0118 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 182:198) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4533 -31.7991 15.8980 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.3588 REMARK 3 T33: 0.3703 T12: -0.0427 REMARK 3 T13: 0.0170 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 3.9856 L22: 0.0830 REMARK 3 L33: 1.2625 L12: 0.7514 REMARK 3 L13: 1.6463 L23: 0.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: -1.1050 S13: -0.1789 REMARK 3 S21: 0.1132 S22: -0.2275 S23: 0.4904 REMARK 3 S31: 0.1429 S32: -0.6177 S33: 0.0528 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 199:221) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3631 -27.3838 5.4937 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.3185 REMARK 3 T33: 0.2274 T12: 0.0537 REMARK 3 T13: -0.0720 T23: -0.0738 REMARK 3 L TENSOR REMARK 3 L11: 7.1294 L22: 3.9530 REMARK 3 L33: 0.9471 L12: -1.3512 REMARK 3 L13: 0.3524 L23: 0.3511 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.8797 S13: 0.0986 REMARK 3 S21: -0.1556 S22: -0.1747 S23: -0.0449 REMARK 3 S31: -0.2416 S32: -0.0006 S33: 0.0367 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 222:232) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9323 -37.2889 8.2537 REMARK 3 T TENSOR REMARK 3 T11: 0.2903 T22: 0.5556 REMARK 3 T33: 0.4357 T12: -0.0956 REMARK 3 T13: 0.0296 T23: -0.2161 REMARK 3 L TENSOR REMARK 3 L11: 8.7578 L22: 2.0070 REMARK 3 L33: 3.3256 L12: -1.0720 REMARK 3 L13: 4.8701 L23: -3.1867 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.2073 S13: -0.9961 REMARK 3 S21: 0.1658 S22: -0.2970 S23: 0.3679 REMARK 3 S31: 0.5693 S32: -0.0944 S33: 0.0750 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 233:257) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0019 -26.0696 7.8734 REMARK 3 T TENSOR REMARK 3 T11: 0.3418 T22: 0.3505 REMARK 3 T33: 0.2271 T12: -0.0183 REMARK 3 T13: -0.0863 T23: -0.1291 REMARK 3 L TENSOR REMARK 3 L11: 3.8548 L22: 2.6722 REMARK 3 L33: 4.1323 L12: 0.5616 REMARK 3 L13: 0.8390 L23: -2.4682 REMARK 3 S TENSOR REMARK 3 S11: -0.2562 S12: 0.1032 S13: 0.1222 REMARK 3 S21: -0.1068 S22: 0.3483 S23: 0.2641 REMARK 3 S31: -0.2012 S32: -0.0773 S33: 0.0543 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 28.1224 -36.2705 6.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.4582 T22: 0.5126 REMARK 3 T33: 0.2843 T12: 0.0470 REMARK 3 T13: 0.0880 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 4.2987 L22: 0.7939 REMARK 3 L33: 1.6419 L12: 0.4696 REMARK 3 L13: -0.9860 L23: 0.5585 REMARK 3 S TENSOR REMARK 3 S11: -0.6321 S12: 0.9945 S13: -0.8003 REMARK 3 S21: -0.8120 S22: 0.1341 S23: -0.0284 REMARK 3 S31: 0.6566 S32: 0.0734 S33: 0.3868 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.14900 REMARK 200 R SYM (I) : 0.14900 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : 0.56000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4F, 20% PEG 3350, 7.6 MM 4 REMARK 280 -CYCLOHEXYL-1-BUTYL-D-MALTOSIDE , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.35300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 124 REMARK 465 GLU A 258 REMARK 465 GLU B 258 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 168.47 -43.76 REMARK 500 CYS A 191 -8.44 -56.77 REMARK 500 ARG A 206 -128.05 -125.08 REMARK 500 ASP A 208 -15.47 -175.92 REMARK 500 ASP A 226 -161.73 -129.74 REMARK 500 LEU A 240 -71.34 -69.27 REMARK 500 ASN A 242 6.62 82.55 REMARK 500 TYR B 137 30.97 70.64 REMARK 500 ASP B 166 -166.27 -79.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CVM A 302 REMARK 610 CVM B 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 HIS A 225 NE2 98.0 REMARK 620 3 CYS A 230 SG 123.2 98.0 REMARK 620 4 CYS A 232 SG 122.2 106.1 104.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 HIS B 225 NE2 89.2 REMARK 620 3 CYS B 230 SG 101.1 105.3 REMARK 620 4 CYS B 232 SG 109.4 140.3 104.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IUP RELATED DB: PDB REMARK 900 RELATED ID: 4IUQ RELATED DB: PDB REMARK 900 RELATED ID: 4IUR RELATED DB: PDB REMARK 900 RELATED ID: 4IUV RELATED DB: PDB REMARK 900 RELATED ID: 4IUU RELATED DB: PDB DBREF 4IUT A 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUT B 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUT C 1 15 UNP P59226 H32_ARATH 2 16 SEQADV 4IUT SER A 124 UNP Q9XI47 EXPRESSION TAG SEQADV 4IUT SER B 124 UNP Q9XI47 EXPRESSION TAG SEQRES 1 A 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 A 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 A 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 A 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 A 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 A 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 A 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 A 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 A 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 A 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 A 135 ARG ARG PRO GLU GLU SEQRES 1 B 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 B 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 B 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 B 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 B 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 B 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 B 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 B 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 B 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 B 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 B 135 ARG ARG PRO GLU GLU SEQRES 1 C 15 ALA ARG THR LYS GLN THR ALA ARG MLY SER THR GLY GLY SEQRES 2 C 15 LYS ALA MODRES 4IUT MLY C 9 LYS N-DIMETHYL-LYSINE HET MLY C 9 11 HET ZN A 301 1 HET CVM A 302 22 HET ZN B 301 1 HET CVM B 302 22 HETNAM MLY N-DIMETHYL-LYSINE HETNAM ZN ZINC ION HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 3 MLY C8 H18 N2 O2 FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CVM 2(C22 H40 O11) FORMUL 8 HOH *78(H2 O) HELIX 1 1 VAL A 175 SER A 178 1 4 HELIX 2 2 GLU A 187 VAL A 194 5 8 HELIX 3 3 GLY A 248 GLU A 250 5 3 HELIX 4 4 VAL B 175 SER B 178 1 4 HELIX 5 5 GLU B 187 VAL B 194 5 8 HELIX 6 6 GLY B 248 GLU B 250 5 3 SHEET 1 A 5 GLU A 171 ASN A 174 0 SHEET 2 A 5 LEU A 156 PHE A 162 -1 N VAL A 160 O GLU A 171 SHEET 3 A 5 TRP A 139 VAL A 150 -1 N SER A 144 O ARG A 161 SHEET 4 A 5 PHE A 129 LYS A 132 -1 N ALA A 131 O TYR A 140 SHEET 5 A 5 VAL A 179 GLU A 181 -1 O ARG A 180 N GLU A 130 SHEET 1 B 6 ILE A 184 PRO A 185 0 SHEET 2 B 6 ILE A 252 ARG A 254 -1 O ARG A 254 N ILE A 184 SHEET 3 B 6 LEU A 199 GLU A 205 -1 N LEU A 201 O CYS A 253 SHEET 4 B 6 ALA A 210 LYS A 221 -1 O LEU A 211 N GLN A 204 SHEET 5 B 6 VAL A 233 TYR A 238 -1 O ARG A 237 N HIS A 216 SHEET 6 B 6 GLU A 244 LEU A 247 -1 O GLU A 245 N VAL A 236 SHEET 1 C 5 GLU B 171 ASN B 174 0 SHEET 2 C 5 LEU B 156 PHE B 162 -1 N VAL B 158 O VAL B 173 SHEET 3 C 5 TRP B 139 VAL B 150 -1 N SER B 144 O ARG B 161 SHEET 4 C 5 PHE B 129 LYS B 132 -1 N PHE B 129 O VAL B 142 SHEET 5 C 5 VAL B 179 GLU B 181 -1 O ARG B 180 N GLU B 130 SHEET 1 D 6 ILE B 184 PRO B 185 0 SHEET 2 D 6 ILE B 252 ARG B 254 -1 O ARG B 254 N ILE B 184 SHEET 3 D 6 LEU B 199 GLU B 205 -1 N LEU B 201 O CYS B 253 SHEET 4 D 6 ALA B 210 LYS B 221 -1 O LEU B 211 N GLN B 204 SHEET 5 D 6 VAL B 233 TYR B 238 -1 O LEU B 235 N ASN B 219 SHEET 6 D 6 GLU B 244 LEU B 247 -1 O GLU B 245 N VAL B 236 LINK C ARG C 8 N MLY C 9 1555 1555 1.32 LINK C MLY C 9 N SER C 10 1555 1555 1.32 LINK SG CYS A 191 ZN ZN A 301 1555 1555 2.50 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.31 LINK SG CYS A 230 ZN ZN A 301 1555 1555 2.57 LINK SG CYS A 232 ZN ZN A 301 1555 1555 2.56 LINK SG CYS B 191 ZN ZN B 301 1555 1555 2.56 LINK NE2 HIS B 225 ZN ZN B 301 1555 1555 2.25 LINK SG CYS B 230 ZN ZN B 301 1555 1555 2.60 LINK SG CYS B 232 ZN ZN B 301 1555 1555 2.55 SITE 1 AC1 4 CYS A 191 HIS A 225 CYS A 230 CYS A 232 SITE 1 AC2 4 PHE A 145 VAL A 175 VAL A 179 HOH A 409 SITE 1 AC3 4 CYS B 191 HIS B 225 CYS B 230 CYS B 232 SITE 1 AC4 7 PHE B 129 PHE B 145 VAL B 175 LYS B 176 SITE 2 AC4 7 VAL B 179 ARG B 180 GLU B 181 CRYST1 53.391 56.706 59.057 90.00 93.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018730 0.000000 0.001053 0.00000 SCALE2 0.000000 0.017635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016960 0.00000