HEADER GENE REGULATION 21-JAN-13 4IUU TITLE CRYSTAL STRUCTURE OF SHH1 SAWADEE DOMAIN IN COMPLEX WITH H3K9ME1 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAWADEE HOMEODOMAIN HOMOLOG 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SHH1 SAWADEE DOMAIN (UNP RESIDUES 125-258); COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2, H3(1-15)K9ME3; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: H3(1-15) K9ME1 PEPTIDE (UNP RESIDUES 2-16); COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: F9L1.16, AT1G15215, AT1G15215; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 14 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 15 ORGANISM_TAXID: 3702 KEYWDS TANDEM TUDOR, ZINC FINGER, H3K9ME2, MEDIATE INTERACTION, HISTONE, KEYWDS 2 METHYLATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.DU,D.J.PATEL REVDAT 4 20-SEP-23 4IUU 1 REMARK SEQADV LINK REVDAT 3 10-JUL-13 4IUU 1 JRNL REVDAT 2 15-MAY-13 4IUU 1 JRNL REVDAT 1 01-MAY-13 4IUU 0 JRNL AUTH J.A.LAW,J.DU,C.J.HALE,S.FENG,K.KRAJEWSKI,A.M.PALANCA, JRNL AUTH 2 B.D.STRAHL,D.J.PATEL,S.E.JACOBSEN JRNL TITL POLYMERASE IV OCCUPANCY AT RNA-DIRECTED DNA METHYLATION JRNL TITL 2 SITES REQUIRES SHH1. JRNL REF NATURE V. 498 385 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23636332 JRNL DOI 10.1038/NATURE12178 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6831 - 3.8939 0.99 3253 156 0.1844 0.2350 REMARK 3 2 3.8939 - 3.0908 1.00 3147 155 0.2022 0.2797 REMARK 3 3 3.0908 - 2.7002 1.00 3088 172 0.2560 0.3290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 24.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.760 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.77250 REMARK 3 B22 (A**2) : -0.30040 REMARK 3 B33 (A**2) : -6.47220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2293 REMARK 3 ANGLE : 0.734 3089 REMARK 3 CHIRALITY : 0.046 342 REMARK 3 PLANARITY : 0.003 396 REMARK 3 DIHEDRAL : 16.044 886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 125:138) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0612 -21.1039 7.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.2481 T22: 0.2352 REMARK 3 T33: 0.1805 T12: 0.0053 REMARK 3 T13: -0.0294 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 5.4729 L22: 2.2716 REMARK 3 L33: 5.6482 L12: 5.0515 REMARK 3 L13: 1.9713 L23: 3.6501 REMARK 3 S TENSOR REMARK 3 S11: 0.4078 S12: -0.0693 S13: -0.2456 REMARK 3 S21: 0.5593 S22: -0.1556 S23: -0.4232 REMARK 3 S31: 0.2289 S32: -0.1217 S33: -0.0798 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 139:145) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6978 -24.9878 7.6545 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.2065 REMARK 3 T33: 0.2394 T12: -0.0959 REMARK 3 T13: -0.0728 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.5316 L22: 2.8683 REMARK 3 L33: 4.5264 L12: 0.8110 REMARK 3 L13: -0.0023 L23: -2.6533 REMARK 3 S TENSOR REMARK 3 S11: -0.3055 S12: 0.3995 S13: -0.3399 REMARK 3 S21: 0.1244 S22: -0.1769 S23: -0.5968 REMARK 3 S31: 0.0534 S32: 1.0491 S33: 0.1056 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 146:155) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2125 -21.3809 23.9441 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.2272 REMARK 3 T33: 0.2150 T12: 0.0241 REMARK 3 T13: 0.0051 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.8311 L22: 2.6507 REMARK 3 L33: 8.4442 L12: 1.1402 REMARK 3 L13: -0.0703 L23: 3.9137 REMARK 3 S TENSOR REMARK 3 S11: 0.1887 S12: 0.0402 S13: 0.0323 REMARK 3 S21: 0.6127 S22: -0.6416 S23: 0.4826 REMARK 3 S31: -0.1443 S32: -0.8667 S33: 0.2933 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:170) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7194 -25.8363 14.5968 REMARK 3 T TENSOR REMARK 3 T11: 0.1069 T22: 0.3739 REMARK 3 T33: 0.2554 T12: 0.0081 REMARK 3 T13: 0.0205 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 4.7163 L22: 5.2719 REMARK 3 L33: 6.2312 L12: -0.9172 REMARK 3 L13: 0.1709 L23: -0.2889 REMARK 3 S TENSOR REMARK 3 S11: 0.2978 S12: -0.3856 S13: -0.3126 REMARK 3 S21: 0.6388 S22: -0.6903 S23: -1.1873 REMARK 3 S31: 0.0275 S32: 0.4315 S33: 0.2978 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 171:181) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9318 -20.2868 12.5610 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.2640 REMARK 3 T33: 0.2108 T12: -0.0078 REMARK 3 T13: -0.0115 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.1643 L22: 4.9343 REMARK 3 L33: 2.1063 L12: -0.2574 REMARK 3 L13: 2.1965 L23: -2.3504 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: 0.1765 S13: -0.0688 REMARK 3 S21: 0.1819 S22: -0.2310 S23: 0.3524 REMARK 3 S31: -0.2095 S32: 0.2603 S33: 0.3246 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 182:187) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2891 -23.5391 -6.3937 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.1952 REMARK 3 T33: 0.2697 T12: 0.0130 REMARK 3 T13: -0.0035 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.0801 L22: 1.9889 REMARK 3 L33: 2.0117 L12: -3.4348 REMARK 3 L13: 2.5537 L23: -9.4583 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.9689 S13: -0.5681 REMARK 3 S21: -1.0078 S22: 0.1222 S23: 0.8293 REMARK 3 S31: 0.3988 S32: -0.2116 S33: -0.0390 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 188:209) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2907 -13.8528 -6.9127 REMARK 3 T TENSOR REMARK 3 T11: 0.3192 T22: 0.1253 REMARK 3 T33: 0.2776 T12: -0.0416 REMARK 3 T13: 0.0245 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.7995 L22: 2.9209 REMARK 3 L33: 4.2102 L12: -2.5478 REMARK 3 L13: -1.8046 L23: 0.2493 REMARK 3 S TENSOR REMARK 3 S11: -0.1472 S12: -0.0324 S13: 0.0593 REMARK 3 S21: -0.1590 S22: -0.0030 S23: -0.1316 REMARK 3 S31: -0.2707 S32: -0.2963 S33: 0.1481 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 210:232) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5771 -13.1754 -13.0790 REMARK 3 T TENSOR REMARK 3 T11: 0.3331 T22: 0.2063 REMARK 3 T33: 0.2826 T12: -0.0209 REMARK 3 T13: 0.0650 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 2.1665 L22: 1.9745 REMARK 3 L33: 3.9152 L12: -0.7220 REMARK 3 L13: 1.7485 L23: 0.5017 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.2510 S13: 0.2931 REMARK 3 S21: -0.4072 S22: -0.3668 S23: 0.1658 REMARK 3 S31: 0.1373 S32: 0.2395 S33: 0.1726 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 233:243) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4974 -5.6350 -2.9461 REMARK 3 T TENSOR REMARK 3 T11: 0.5613 T22: 0.2438 REMARK 3 T33: 0.3129 T12: -0.0208 REMARK 3 T13: 0.0693 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 4.2830 L22: 2.1391 REMARK 3 L33: 2.0471 L12: -0.8876 REMARK 3 L13: 4.4604 L23: 1.2045 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: -0.5208 S13: 0.4858 REMARK 3 S21: 0.7391 S22: -0.1466 S23: 0.4574 REMARK 3 S31: -0.5255 S32: 0.1253 S33: 0.5354 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 244:257) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0920 -14.8457 -7.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.2149 REMARK 3 T33: 0.1216 T12: 0.0394 REMARK 3 T13: -0.0403 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 3.8256 L22: 7.8758 REMARK 3 L33: 6.3072 L12: 1.3030 REMARK 3 L13: -0.6929 L23: -0.4885 REMARK 3 S TENSOR REMARK 3 S11: 0.4441 S12: -0.0541 S13: 0.0792 REMARK 3 S21: -0.7848 S22: -0.4312 S23: 0.2906 REMARK 3 S31: -0.1478 S32: -0.3871 S33: -0.0991 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 124:170) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4250 -18.3331 38.4344 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.2041 REMARK 3 T33: 0.2428 T12: 0.0024 REMARK 3 T13: 0.0073 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 2.7684 L22: 2.6382 REMARK 3 L33: 4.0455 L12: 0.8439 REMARK 3 L13: -2.1339 L23: -2.1800 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0595 S13: 0.2693 REMARK 3 S21: -0.0025 S22: 0.0205 S23: -0.2183 REMARK 3 S31: -0.1577 S32: 0.1990 S33: -0.0745 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 171:198) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6724 -17.3448 22.8088 REMARK 3 T TENSOR REMARK 3 T11: 0.2961 T22: 0.3516 REMARK 3 T33: 0.3043 T12: -0.0509 REMARK 3 T13: 0.0698 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.9874 L22: 2.6346 REMARK 3 L33: 2.9739 L12: -1.2236 REMARK 3 L13: 1.2041 L23: -1.6009 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.6397 S13: -0.2263 REMARK 3 S21: -0.5886 S22: -0.0878 S23: -0.2102 REMARK 3 S31: 0.3576 S32: -0.0260 S33: 0.1760 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 199:221) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8765 -5.0196 22.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.5126 T22: 0.2527 REMARK 3 T33: 0.3647 T12: 0.0354 REMARK 3 T13: 0.1025 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 4.2469 L22: 4.0263 REMARK 3 L33: 3.6004 L12: -0.1507 REMARK 3 L13: -0.3911 L23: 1.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.1293 S12: 0.2550 S13: 0.4438 REMARK 3 S21: -0.4762 S22: -0.0489 S23: -0.2122 REMARK 3 S31: -1.3817 S32: -0.3936 S33: -0.0092 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 222:248) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5876 -5.1706 13.6243 REMARK 3 T TENSOR REMARK 3 T11: 0.6343 T22: 0.4635 REMARK 3 T33: 0.5063 T12: 0.0034 REMARK 3 T13: 0.1844 T23: 0.1586 REMARK 3 L TENSOR REMARK 3 L11: 6.5732 L22: 2.2284 REMARK 3 L33: 6.2592 L12: -1.5414 REMARK 3 L13: -2.4408 L23: 2.8232 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: 0.7772 S13: 0.0067 REMARK 3 S21: -0.7887 S22: -0.0461 S23: -0.2481 REMARK 3 S31: -0.1215 S32: 0.0851 S33: 0.0523 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 249:257) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3329 -14.0238 18.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.5944 T22: 0.5928 REMARK 3 T33: 0.3345 T12: 0.0472 REMARK 3 T13: 0.1055 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 5.8276 L22: 3.1267 REMARK 3 L33: 2.1933 L12: -4.2258 REMARK 3 L13: -1.3239 L23: 0.4274 REMARK 3 S TENSOR REMARK 3 S11: -0.2226 S12: 0.9362 S13: -0.3050 REMARK 3 S21: -0.9858 S22: -0.1215 S23: -0.9864 REMARK 3 S31: 0.3634 S32: 0.4376 S33: 0.2313 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -6.1016 -6.8471 29.7914 REMARK 3 T TENSOR REMARK 3 T11: 0.4502 T22: 0.4935 REMARK 3 T33: 0.6193 T12: 0.2216 REMARK 3 T13: -0.0808 T23: -0.1193 REMARK 3 L TENSOR REMARK 3 L11: 3.8016 L22: 8.1739 REMARK 3 L33: 1.9973 L12: 0.4047 REMARK 3 L13: -1.4998 L23: 3.9789 REMARK 3 S TENSOR REMARK 3 S11: -0.2823 S12: 0.1142 S13: 0.2071 REMARK 3 S21: -0.2849 S22: 0.4999 S23: -1.2214 REMARK 3 S31: -0.6962 S32: 0.8220 S33: -0.6449 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4F, 20% PEG 3350, 7.6 MM 4 REMARK 280 -CYCLOHEXYL-1-BUTYL-D-MALTOSIDE , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.37950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.05400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.37950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.05400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 124 REMARK 465 PHE A 165 REMARK 465 ASP A 166 REMARK 465 ASN A 167 REMARK 465 ARG A 168 REMARK 465 HIS A 169 REMARK 465 ASP A 208 REMARK 465 GLU A 258 REMARK 465 GLU B 258 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 206 -165.82 -117.77 REMARK 500 ASP A 226 -141.60 -98.39 REMARK 500 PRO B 188 -19.49 -45.96 REMARK 500 ARG B 206 -164.43 -112.79 REMARK 500 ARG B 222 171.81 -44.08 REMARK 500 ASP B 226 -150.09 -81.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CVM A 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 191 SG REMARK 620 2 HIS A 225 NE2 108.8 REMARK 620 3 CYS A 230 SG 110.9 98.3 REMARK 620 4 CYS A 232 SG 115.4 117.1 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 191 SG REMARK 620 2 HIS B 225 NE2 106.0 REMARK 620 3 CYS B 230 SG 102.2 70.5 REMARK 620 4 CYS B 232 SG 169.7 83.4 76.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IUP RELATED DB: PDB REMARK 900 RELATED ID: 4IUQ RELATED DB: PDB REMARK 900 RELATED ID: 4IUR RELATED DB: PDB REMARK 900 RELATED ID: 4IUT RELATED DB: PDB REMARK 900 RELATED ID: 4IUV RELATED DB: PDB DBREF 4IUU A 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUU B 125 258 UNP Q9XI47 Q9XI47_ARATH 125 258 DBREF 4IUU C 1 15 UNP P59226 H32_ARATH 2 16 SEQADV 4IUU SER A 124 UNP Q9XI47 EXPRESSION TAG SEQADV 4IUU SER B 124 UNP Q9XI47 EXPRESSION TAG SEQRES 1 A 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 A 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 A 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 A 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 A 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 A 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 A 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 A 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 A 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 A 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 A 135 ARG ARG PRO GLU GLU SEQRES 1 B 135 SER ALA ASP LEU ALA PHE GLU ALA LYS SER ALA ARG ASP SEQRES 2 B 135 TYR ALA TRP TYR ASP VAL SER SER PHE LEU THR TYR ARG SEQRES 3 B 135 VAL LEU ARG THR GLY GLU LEU GLU VAL ARG VAL ARG PHE SEQRES 4 B 135 SER GLY PHE ASP ASN ARG HIS ASP GLU TRP VAL ASN VAL SEQRES 5 B 135 LYS THR SER VAL ARG GLU ARG SER ILE PRO VAL GLU PRO SEQRES 6 B 135 SER GLU CYS GLY ARG VAL ASN VAL GLY ASP LEU LEU LEU SEQRES 7 B 135 CYS PHE GLN GLU ARG GLU ASP GLN ALA LEU TYR CYS ASP SEQRES 8 B 135 GLY HIS VAL LEU ASN ILE LYS ARG GLY ILE HIS ASP HIS SEQRES 9 B 135 ALA ARG CYS ASN CYS VAL PHE LEU VAL ARG TYR GLU LEU SEQRES 10 B 135 ASP ASN THR GLU GLU SER LEU GLY LEU GLU ARG ILE CYS SEQRES 11 B 135 ARG ARG PRO GLU GLU SEQRES 1 C 15 ALA ARG THR LYS GLN THR ALA ARG MLZ SER THR GLY GLY SEQRES 2 C 15 LYS ALA MODRES 4IUU MLZ C 9 LYS N-METHYL-LYSINE HET MLZ C 9 10 HET ZN A 301 1 HET CVM A 302 22 HET ZN B 301 1 HET CVM B 302 33 HETNAM MLZ N-METHYL-LYSINE HETNAM ZN ZINC ION HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 3 MLZ C7 H16 N2 O2 FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CVM 2(C22 H40 O11) FORMUL 8 HOH *54(H2 O) HELIX 1 1 VAL A 175 SER A 178 1 4 HELIX 2 2 GLU A 187 VAL A 194 5 8 HELIX 3 3 GLY A 248 GLU A 250 5 3 HELIX 4 4 ASP B 166 ASP B 170 5 5 HELIX 5 5 VAL B 175 SER B 178 1 4 HELIX 6 6 GLU B 190 VAL B 194 5 5 HELIX 7 7 GLY B 248 GLU B 250 5 3 SHEET 1 A 5 GLU A 171 ASN A 174 0 SHEET 2 A 5 LEU A 156 PHE A 162 -1 N VAL A 158 O VAL A 173 SHEET 3 A 5 TRP A 139 VAL A 150 -1 N SER A 144 O ARG A 161 SHEET 4 A 5 PHE A 129 LYS A 132 -1 N PHE A 129 O VAL A 142 SHEET 5 A 5 VAL A 179 GLU A 181 -1 O ARG A 180 N GLU A 130 SHEET 1 B 6 ILE A 184 PRO A 185 0 SHEET 2 B 6 ILE A 252 ARG A 254 -1 O ARG A 254 N ILE A 184 SHEET 3 B 6 LEU A 199 GLU A 205 -1 N LEU A 201 O CYS A 253 SHEET 4 B 6 ALA A 210 LYS A 221 -1 O LEU A 211 N GLN A 204 SHEET 5 B 6 VAL A 233 TYR A 238 -1 O LEU A 235 N LEU A 218 SHEET 6 B 6 GLU A 244 LEU A 247 -1 O LEU A 247 N PHE A 234 SHEET 1 C 5 GLU B 171 ASN B 174 0 SHEET 2 C 5 LEU B 156 PHE B 162 -1 N VAL B 160 O GLU B 171 SHEET 3 C 5 TRP B 139 VAL B 150 -1 N SER B 143 O ARG B 161 SHEET 4 C 5 PHE B 129 LYS B 132 -1 N PHE B 129 O VAL B 142 SHEET 5 C 5 VAL B 179 GLU B 181 -1 O ARG B 180 N GLU B 130 SHEET 1 D 6 ILE B 184 PRO B 185 0 SHEET 2 D 6 ILE B 252 ARG B 254 -1 O ARG B 254 N ILE B 184 SHEET 3 D 6 LEU B 199 GLU B 205 -1 N LEU B 201 O CYS B 253 SHEET 4 D 6 ALA B 210 LYS B 221 -1 O GLY B 215 N LEU B 200 SHEET 5 D 6 VAL B 233 TYR B 238 -1 O ARG B 237 N HIS B 216 SHEET 6 D 6 GLU B 244 LEU B 247 -1 O LEU B 247 N PHE B 234 LINK C ARG C 8 N MLZ C 9 1555 1555 1.33 LINK C MLZ C 9 N SER C 10 1555 1555 1.33 LINK SG CYS A 191 ZN ZN A 301 1555 1555 2.48 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.20 LINK SG CYS A 230 ZN ZN A 301 1555 1555 2.58 LINK SG CYS A 232 ZN ZN A 301 1555 1555 2.54 LINK SG CYS B 191 ZN ZN B 301 1555 1555 2.34 LINK NE2 HIS B 225 ZN ZN B 301 1555 1555 2.51 LINK SG CYS B 230 ZN ZN B 301 1555 1555 2.66 LINK SG CYS B 232 ZN ZN B 301 1555 1555 2.49 SITE 1 AC1 4 CYS A 191 HIS A 225 CYS A 230 CYS A 232 SITE 1 AC2 7 PHE A 129 PHE A 145 VAL A 175 LYS A 176 SITE 2 AC2 7 VAL A 179 THR B 147 CVM B 302 SITE 1 AC3 4 CYS B 191 HIS B 225 CYS B 230 CYS B 232 SITE 1 AC4 7 THR A 147 TYR A 148 CVM A 302 PHE B 129 SITE 2 AC4 7 PHE B 145 LYS B 176 VAL B 179 CRYST1 54.759 118.108 53.423 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018262 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018719 0.00000 CONECT 507 2202 CONECT 770 2202 CONECT 810 2202 CONECT 824 2202 CONECT 1598 2225 CONECT 1869 2225 CONECT 1909 2225 CONECT 1923 2225 CONECT 2176 2185 CONECT 2185 2176 2186 CONECT 2186 2185 2187 2193 CONECT 2187 2186 2188 CONECT 2188 2187 2189 CONECT 2189 2188 2190 CONECT 2190 2189 2191 CONECT 2191 2190 2192 CONECT 2192 2191 CONECT 2193 2186 2194 2195 CONECT 2194 2193 CONECT 2195 2193 CONECT 2202 507 770 810 824 CONECT 2203 2204 2213 CONECT 2204 2203 2205 CONECT 2205 2204 2206 CONECT 2206 2205 2207 CONECT 2207 2206 2208 2212 CONECT 2208 2207 2209 CONECT 2209 2208 2210 CONECT 2210 2209 2211 CONECT 2211 2210 2212 CONECT 2212 2207 2211 CONECT 2213 2203 2214 CONECT 2214 2213 2215 2219 CONECT 2215 2214 2216 CONECT 2216 2215 2217 2220 CONECT 2217 2216 2218 2224 CONECT 2218 2217 2219 2222 CONECT 2219 2214 2218 2223 CONECT 2220 2216 2221 CONECT 2221 2220 CONECT 2222 2218 CONECT 2223 2219 CONECT 2224 2217 CONECT 2225 1598 1869 1909 1923 CONECT 2226 2227 2236 CONECT 2227 2226 2228 CONECT 2228 2227 2229 CONECT 2229 2228 2230 CONECT 2230 2229 2231 2235 CONECT 2231 2230 2232 CONECT 2232 2231 2233 CONECT 2233 2232 2234 CONECT 2234 2233 2235 CONECT 2235 2230 2234 CONECT 2236 2226 2237 CONECT 2237 2236 2238 2242 CONECT 2238 2237 2239 CONECT 2239 2238 2240 2243 CONECT 2240 2239 2241 2247 CONECT 2241 2240 2242 2245 CONECT 2242 2237 2241 2246 CONECT 2243 2239 2244 CONECT 2244 2243 CONECT 2245 2241 CONECT 2246 2242 CONECT 2247 2240 2248 CONECT 2248 2247 2249 2253 CONECT 2249 2248 2250 CONECT 2250 2249 2251 2254 CONECT 2251 2250 2252 2256 CONECT 2252 2251 2253 2257 CONECT 2253 2248 2252 2258 CONECT 2254 2250 2255 CONECT 2255 2254 CONECT 2256 2251 CONECT 2257 2252 CONECT 2258 2253 MASTER 541 0 5 7 22 0 6 6 2309 3 77 24 END