HEADER CHAPERONE 22-JAN-13 4IVG TITLE CRYSTAL STRUCTURE OF MITOCHONDRIAL HSP90 (TRAP1) NTD-MIDDLE DOMAIN TITLE 2 DIMER WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 73-719; COMPND 5 SYNONYM: TRAP1 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TRAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS CHAPERONE, ATPASE, ATP BINDING, MITOCHONDRIA EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PARTRIDGE,L.A.LAVERY,D.A.AGARD REVDAT 2 27-AUG-14 4IVG 1 JRNL REVDAT 1 22-JAN-14 4IVG 0 JRNL AUTH L.A.LAVERY,J.R.PARTRIDGE,T.A.RAMELOT,D.ELNATAN,M.A.KENNEDY, JRNL AUTH 2 D.A.AGARD JRNL TITL STRUCTURAL ASYMMETRY IN THE CLOSED STATE OF MITOCHONDRIAL JRNL TITL 2 HSP90 (TRAP1) SUPPORTS A TWO-STEP ATP HYDROLYSIS MECHANISM. JRNL REF MOL.CELL V. 53 330 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 24462206 JRNL DOI 10.1016/J.MOLCEL.2013.12.023 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 63000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5498 - 4.2125 1.00 4614 152 0.1670 0.1681 REMARK 3 2 4.2125 - 3.3451 1.00 4449 146 0.1663 0.1630 REMARK 3 3 3.3451 - 2.9227 1.00 4445 146 0.1825 0.2203 REMARK 3 4 2.9227 - 2.6557 1.00 4373 143 0.1853 0.2077 REMARK 3 5 2.6557 - 2.4654 1.00 4402 144 0.1914 0.2145 REMARK 3 6 2.4654 - 2.3201 1.00 4384 144 0.1873 0.2016 REMARK 3 7 2.3201 - 2.2040 1.00 4370 142 0.2107 0.2492 REMARK 3 8 2.2040 - 2.1081 1.00 4339 143 0.2019 0.2213 REMARK 3 9 2.1081 - 2.0269 1.00 4367 143 0.2142 0.2436 REMARK 3 10 2.0269 - 1.9570 1.00 4348 142 0.2197 0.2494 REMARK 3 11 1.9570 - 1.8958 1.00 4337 143 0.2649 0.2821 REMARK 3 12 1.8958 - 1.8416 1.00 4344 142 0.2600 0.2896 REMARK 3 13 1.8416 - 1.7932 0.97 4203 138 0.2975 0.2782 REMARK 3 14 1.7932 - 1.7494 0.92 4026 132 0.3355 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3998 REMARK 3 ANGLE : 1.117 5403 REMARK 3 CHIRALITY : 0.075 590 REMARK 3 PLANARITY : 0.004 689 REMARK 3 DIHEDRAL : 15.530 1503 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 85:108) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0570 -15.6822 -19.8535 REMARK 3 T TENSOR REMARK 3 T11: 0.6809 T22: 0.3983 REMARK 3 T33: 0.3650 T12: 0.1450 REMARK 3 T13: -0.1465 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.6820 L22: 2.6375 REMARK 3 L33: 3.6309 L12: -0.9303 REMARK 3 L13: -0.2194 L23: -0.2032 REMARK 3 S TENSOR REMARK 3 S11: -0.3815 S12: -0.2318 S13: -0.2209 REMARK 3 S21: 0.8950 S22: 0.2704 S23: -0.3222 REMARK 3 S31: 0.2738 S32: -0.1682 S33: 0.1233 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 109:309) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9456 9.1474 -28.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.2177 REMARK 3 T33: 0.2566 T12: 0.0653 REMARK 3 T13: 0.1186 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.1416 L22: 2.8381 REMARK 3 L33: 2.9286 L12: -0.5303 REMARK 3 L13: 0.0683 L23: 0.3054 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: -0.1827 S13: -0.1475 REMARK 3 S21: 0.5977 S22: 0.1192 S23: 0.3453 REMARK 3 S31: 0.2289 S32: -0.1899 S33: -0.0097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 310:449) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7175 -5.2438 -54.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.2168 REMARK 3 T33: 0.2767 T12: -0.0075 REMARK 3 T13: 0.0593 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.1469 L22: 3.2780 REMARK 3 L33: 5.0020 L12: 0.1223 REMARK 3 L13: 1.1726 L23: 1.4560 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.1118 S13: 0.0856 REMARK 3 S21: -0.3301 S22: 0.0505 S23: 0.0689 REMARK 3 S31: -0.2018 S32: -0.0448 S33: 0.0300 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 450:568) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0236 -19.6814 -79.5858 REMARK 3 T TENSOR REMARK 3 T11: 0.5142 T22: 0.3152 REMARK 3 T33: 0.2754 T12: -0.0179 REMARK 3 T13: 0.0504 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 3.6843 L22: 2.9451 REMARK 3 L33: 6.8039 L12: -1.1426 REMARK 3 L13: -0.0091 L23: 1.3019 REMARK 3 S TENSOR REMARK 3 S11: 0.1542 S12: 0.3874 S13: -0.3333 REMARK 3 S21: -0.7476 S22: -0.0319 S23: 0.1049 REMARK 3 S31: 0.1622 S32: -0.0543 S33: -0.0965 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-13. REMARK 100 THE RCSB ID CODE IS RCSB077259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115869 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63000 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE PH 6.5, 12% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.57300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.25450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.72800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.57300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.25450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.72800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.57300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.25450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.72800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.57300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.25450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.72800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 82520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -155.45600 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -155.45600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1081 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 73 REMARK 465 THR A 74 REMARK 465 GLN A 75 REMARK 465 GLN A 76 REMARK 465 HIS A 77 REMARK 465 THR A 78 REMARK 465 GLU A 79 REMARK 465 PRO A 80 REMARK 465 ALA A 81 REMARK 465 GLU A 82 REMARK 465 GLU A 83 REMARK 465 GLU A 84 REMARK 465 ALA A 149 REMARK 465 GLY A 150 REMARK 465 GLY A 151 REMARK 465 ASP A 152 REMARK 465 GLU A 373 REMARK 465 MET A 374 REMARK 465 GLY A 375 REMARK 465 ILE A 569 REMARK 465 VAL A 570 REMARK 465 VAL A 571 REMARK 465 ASP A 572 REMARK 465 HIS A 573 REMARK 465 TYR A 574 REMARK 465 LYS A 575 REMARK 465 GLU A 576 REMARK 465 GLU A 577 REMARK 465 LYS A 578 REMARK 465 PHE A 579 REMARK 465 GLN A 580 REMARK 465 ASP A 581 REMARK 465 SER A 582 REMARK 465 LYS A 583 REMARK 465 PRO A 584 REMARK 465 ALA A 585 REMARK 465 SER A 586 REMARK 465 GLU A 587 REMARK 465 ARG A 588 REMARK 465 LEU A 589 REMARK 465 SER A 590 REMARK 465 SER A 591 REMARK 465 GLU A 592 REMARK 465 GLN A 593 REMARK 465 ALA A 594 REMARK 465 GLU A 595 REMARK 465 ASP A 596 REMARK 465 LEU A 597 REMARK 465 LEU A 598 REMARK 465 ALA A 599 REMARK 465 TRP A 600 REMARK 465 MET A 601 REMARK 465 ARG A 602 REMARK 465 ASN A 603 REMARK 465 ALA A 604 REMARK 465 LEU A 605 REMARK 465 VAL A 606 REMARK 465 GLN A 607 REMARK 465 ARG A 608 REMARK 465 VAL A 609 REMARK 465 THR A 610 REMARK 465 ASN A 611 REMARK 465 ILE A 612 REMARK 465 LYS A 613 REMARK 465 VAL A 614 REMARK 465 THR A 615 REMARK 465 PRO A 616 REMARK 465 ARG A 617 REMARK 465 LEU A 618 REMARK 465 ASP A 619 REMARK 465 THR A 620 REMARK 465 HIS A 621 REMARK 465 PRO A 622 REMARK 465 ALA A 623 REMARK 465 MET A 624 REMARK 465 ILE A 625 REMARK 465 THR A 626 REMARK 465 VAL A 627 REMARK 465 LEU A 628 REMARK 465 GLU A 629 REMARK 465 MET A 630 REMARK 465 GLY A 631 REMARK 465 ALA A 632 REMARK 465 ALA A 633 REMARK 465 ARG A 634 REMARK 465 HIS A 635 REMARK 465 PHE A 636 REMARK 465 LEU A 637 REMARK 465 ARG A 638 REMARK 465 THR A 639 REMARK 465 GLN A 640 REMARK 465 GLN A 641 REMARK 465 LEU A 642 REMARK 465 ALA A 643 REMARK 465 ARG A 644 REMARK 465 SER A 645 REMARK 465 SER A 646 REMARK 465 GLU A 647 REMARK 465 GLU A 648 REMARK 465 ARG A 649 REMARK 465 ALA A 650 REMARK 465 GLN A 651 REMARK 465 ILE A 652 REMARK 465 LEU A 653 REMARK 465 GLN A 654 REMARK 465 PRO A 655 REMARK 465 THR A 656 REMARK 465 LEU A 657 REMARK 465 GLU A 658 REMARK 465 ILE A 659 REMARK 465 ASN A 660 REMARK 465 THR A 661 REMARK 465 GLY A 662 REMARK 465 HIS A 663 REMARK 465 ASP A 664 REMARK 465 LEU A 665 REMARK 465 ILE A 666 REMARK 465 LYS A 667 REMARK 465 LYS A 668 REMARK 465 LEU A 669 REMARK 465 HIS A 670 REMARK 465 ALA A 671 REMARK 465 LEU A 672 REMARK 465 LYS A 673 REMARK 465 ASP A 674 REMARK 465 SER A 675 REMARK 465 ASN A 676 REMARK 465 PRO A 677 REMARK 465 GLU A 678 REMARK 465 LEU A 679 REMARK 465 ALA A 680 REMARK 465 GLN A 681 REMARK 465 LEU A 682 REMARK 465 LEU A 683 REMARK 465 LEU A 684 REMARK 465 GLU A 685 REMARK 465 GLN A 686 REMARK 465 ILE A 687 REMARK 465 TYR A 688 REMARK 465 ASP A 689 REMARK 465 ASN A 690 REMARK 465 ALA A 691 REMARK 465 MET A 692 REMARK 465 ILE A 693 REMARK 465 ALA A 694 REMARK 465 ALA A 695 REMARK 465 GLY A 696 REMARK 465 LEU A 697 REMARK 465 ASN A 698 REMARK 465 GLU A 699 REMARK 465 ASP A 700 REMARK 465 PRO A 701 REMARK 465 ARG A 702 REMARK 465 PRO A 703 REMARK 465 MET A 704 REMARK 465 ILE A 705 REMARK 465 SER A 706 REMARK 465 ARG A 707 REMARK 465 LEU A 708 REMARK 465 ASN A 709 REMARK 465 GLN A 710 REMARK 465 LEU A 711 REMARK 465 LEU A 712 REMARK 465 THR A 713 REMARK 465 ARG A 714 REMARK 465 ALA A 715 REMARK 465 LEU A 716 REMARK 465 GLU A 717 REMARK 465 LYS A 718 REMARK 465 HIS A 719 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 215 -21.31 -142.74 REMARK 500 ASP A 240 32.69 -141.77 REMARK 500 GLN A 264 125.09 -38.49 REMARK 500 ASP A 448 83.88 -150.76 REMARK 500 PHE A 546 75.29 -104.32 REMARK 500 ARG A 555 -55.74 69.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 134 OD1 REMARK 620 2 HOH A1122 O 83.9 REMARK 620 3 ANP A 801 O2G 170.1 88.0 REMARK 620 4 HOH A 906 O 88.9 92.0 85.8 REMARK 620 5 ANP A 801 O1A 87.8 170.3 100.7 93.0 REMARK 620 6 ANP A 801 O2B 94.1 87.8 91.2 177.0 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IPE RELATED DB: PDB REMARK 900 FULL LENGTH VERSION OF TRAP1 CRYSTALLIZED WITH AMPPNP DBREF 4IVG A 73 719 UNP A8WFV1 A8WFV1_DANRE 73 719 SEQADV 4IVG ALA A 566 UNP A8WFV1 GLU 566 ENGINEERED MUTATION SEQRES 1 A 647 SER THR GLN GLN HIS THR GLU PRO ALA GLU GLU GLU THR SEQRES 2 A 647 LEU HIS ASN ILE ILE THR ASP THR GLU ASN VAL GLN GLY SEQRES 3 A 647 SER PHE SER LYS HIS GLU PHE GLN ALA GLU THR LYS LYS SEQRES 4 A 647 LEU LEU ASP ILE VAL ALA ARG SER LEU TYR SER GLU LYS SEQRES 5 A 647 GLU VAL PHE ILE ARG GLU LEU ILE SER ASN GLY SER ASP SEQRES 6 A 647 ALA LEU GLU LYS LEU ARG HIS ARG MET ILE THR ALA GLY SEQRES 7 A 647 GLY ASP THR ALA PRO MET GLU ILE HIS LEU GLN THR ASP SEQRES 8 A 647 SER VAL LYS GLY THR PHE THR ILE GLN ASP THR GLY VAL SEQRES 9 A 647 GLY MET ASN LYS GLU ASP LEU VAL SER ASN LEU GLY THR SEQRES 10 A 647 ILE ALA ARG SER GLY SER LYS ALA PHE LEU ASP ALA LEU SEQRES 11 A 647 GLN ASN GLN ALA GLU ALA SER SER SER ILE ILE GLY GLN SEQRES 12 A 647 PHE GLY VAL GLY PHE TYR SER ALA PHE MET VAL ALA ASP SEQRES 13 A 647 LYS VAL GLU VAL TYR SER GLN SER ALA GLU ALA ASP ALA SEQRES 14 A 647 PRO GLY TYR LYS TRP SER SER ASP GLY SER GLY VAL PHE SEQRES 15 A 647 GLU VAL ALA GLU ALA SER GLY VAL ARG GLN GLY THR LYS SEQRES 16 A 647 ILE VAL LEU HIS LEU LYS ASP ASP CYS LYS GLU PHE SER SEQRES 17 A 647 SER GLU ASP ARG VAL LYS GLU VAL VAL THR LYS TYR SER SEQRES 18 A 647 ASN PHE VAL SER PHE PRO ILE PHE LEU ASN GLY ARG ARG SEQRES 19 A 647 LEU ASN THR LEU GLN ALA LEU TRP MET MET GLU PRO LYS SEQRES 20 A 647 ASP ILE SER GLU TRP GLN HIS GLU GLU PHE TYR ARG TYR SEQRES 21 A 647 VAL ALA GLN ALA TYR ASP LYS PRO ARG TYR THR LEU HIS SEQRES 22 A 647 TYR ARG ALA ASP ALA PRO LEU ASN ILE ARG SER ILE PHE SEQRES 23 A 647 TYR VAL PRO GLU MET LYS PRO SER MET PHE ASP VAL SER SEQRES 24 A 647 ARG GLU MET GLY SER SER VAL ALA LEU TYR SER ARG LYS SEQRES 25 A 647 ILE LEU ILE GLN THR LYS ALA THR ASP ILE LEU PRO LYS SEQRES 26 A 647 TRP LEU ARG PHE LEU ARG GLY VAL VAL ASP SER GLU ASP SEQRES 27 A 647 ILE PRO LEU ASN LEU SER ARG GLU LEU LEU GLN GLU SER SEQRES 28 A 647 ALA LEU ILE ARG LYS LEU ARG ASP VAL LEU GLN GLN ARG SEQRES 29 A 647 VAL ILE ARG PHE LEU LEU ASP GLN SER LYS LYS ASP PRO SEQRES 30 A 647 GLU LYS TYR ALA ARG PHE PHE GLU ASP TYR GLY LEU PHE SEQRES 31 A 647 MET ARG GLU GLY ILE VAL THR THR GLY GLU GLN SER VAL SEQRES 32 A 647 LYS GLU ASP ILE ALA LYS LEU LEU ARG PHE GLU SER SER SEQRES 33 A 647 ALA LEU PRO ALA GLY GLN GLN THR SER LEU MET GLU TYR SEQRES 34 A 647 SER SER ARG MET LYS ALA GLY THR ARG ASN ILE TYR TYR SEQRES 35 A 647 LEU CYS ALA PRO ASN ARG HIS LEU ALA GLU HIS SER PRO SEQRES 36 A 647 TYR PHE GLU ALA MET LYS GLN LYS ASP MET GLU VAL LEU SEQRES 37 A 647 PHE CYS PHE GLU GLN PHE ASP GLU LEU THR LEU LEU HIS SEQRES 38 A 647 LEU ARG GLU PHE ASP ARG LYS LYS LEU ILE SER ALA ALA SEQRES 39 A 647 THR ASP ILE VAL VAL ASP HIS TYR LYS GLU GLU LYS PHE SEQRES 40 A 647 GLN ASP SER LYS PRO ALA SER GLU ARG LEU SER SER GLU SEQRES 41 A 647 GLN ALA GLU ASP LEU LEU ALA TRP MET ARG ASN ALA LEU SEQRES 42 A 647 VAL GLN ARG VAL THR ASN ILE LYS VAL THR PRO ARG LEU SEQRES 43 A 647 ASP THR HIS PRO ALA MET ILE THR VAL LEU GLU MET GLY SEQRES 44 A 647 ALA ALA ARG HIS PHE LEU ARG THR GLN GLN LEU ALA ARG SEQRES 45 A 647 SER SER GLU GLU ARG ALA GLN ILE LEU GLN PRO THR LEU SEQRES 46 A 647 GLU ILE ASN THR GLY HIS ASP LEU ILE LYS LYS LEU HIS SEQRES 47 A 647 ALA LEU LYS ASP SER ASN PRO GLU LEU ALA GLN LEU LEU SEQRES 48 A 647 LEU GLU GLN ILE TYR ASP ASN ALA MET ILE ALA ALA GLY SEQRES 49 A 647 LEU ASN GLU ASP PRO ARG PRO MET ILE SER ARG LEU ASN SEQRES 50 A 647 GLN LEU LEU THR ARG ALA LEU GLU LYS HIS HET ANP A 801 31 HET PO4 A 802 5 HET MG A 803 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 PO4 O4 P 3- FORMUL 4 MG MG 2+ FORMUL 5 HOH *344(H2 O) HELIX 1 1 GLU A 108 SER A 119 1 12 HELIX 2 2 GLU A 125 ARG A 145 1 21 HELIX 3 3 ASN A 179 THR A 189 1 11 HELIX 4 4 GLY A 194 LEU A 202 1 9 HELIX 5 5 GLN A 205 ILE A 212 1 8 HELIX 6 6 VAL A 218 TYR A 221 5 4 HELIX 7 7 SER A 222 VAL A 226 1 5 HELIX 8 8 ASP A 274 SER A 280 5 7 HELIX 9 9 SER A 281 SER A 293 1 13 HELIX 10 10 ALA A 312 MET A 316 5 5 HELIX 11 11 GLU A 317 ILE A 321 5 5 HELIX 12 12 SER A 322 ALA A 334 1 13 HELIX 13 13 SER A 366 ARG A 372 1 7 HELIX 14 14 PRO A 396 ARG A 400 5 5 HELIX 15 15 SER A 423 ASP A 448 1 26 HELIX 16 16 ASP A 448 THR A 470 1 23 HELIX 17 17 GLU A 472 LYS A 481 1 10 HELIX 18 18 SER A 497 MET A 505 1 9 HELIX 19 19 ASN A 519 HIS A 525 1 7 HELIX 20 20 SER A 526 LYS A 535 1 10 HELIX 21 21 PHE A 546 ARG A 555 1 10 SHEET 1 A 8 PHE A 254 ALA A 259 0 SHEET 2 A 8 GLY A 243 SER A 248 -1 N LYS A 245 O ALA A 257 SHEET 3 A 8 ALA A 227 GLN A 235 -1 N VAL A 232 O TRP A 246 SHEET 4 A 8 GLY A 265 LEU A 272 -1 O LYS A 267 N TYR A 233 SHEET 5 A 8 THR A 168 ASP A 173 -1 N ILE A 171 O ILE A 268 SHEET 6 A 8 ILE A 158 ASP A 163 -1 N HIS A 159 O GLN A 172 SHEET 7 A 8 ILE A 300 LEU A 302 1 O PHE A 301 N ILE A 158 SHEET 8 A 8 ARG A 305 ARG A 306 -1 O ARG A 305 N LEU A 302 SHEET 1 B 5 PRO A 340 ALA A 348 0 SHEET 2 B 5 ILE A 354 PRO A 361 -1 O VAL A 360 N ARG A 341 SHEET 3 B 5 ARG A 403 ASP A 407 -1 O ARG A 403 N TYR A 359 SHEET 4 B 5 SER A 377 SER A 382 1 N TYR A 381 O VAL A 406 SHEET 5 B 5 ILE A 385 GLN A 388 -1 O GLN A 388 N LEU A 380 SHEET 1 C 5 GLU A 486 SER A 487 0 SHEET 2 C 5 VAL A 539 CYS A 542 -1 O PHE A 541 N GLU A 486 SHEET 3 C 5 ASN A 511 CYS A 516 1 N TYR A 513 O LEU A 540 SHEET 4 C 5 LYS A 560 SER A 564 1 O LYS A 561 N ILE A 512 SHEET 5 C 5 GLU A 556 PHE A 557 -1 N PHE A 557 O LYS A 560 SSBOND 1 CYS A 516 CYS A 542 1555 1555 2.04 LINK OD1 ASN A 134 MG MG A 803 1555 1555 2.01 LINK MG MG A 803 O HOH A1122 1555 1555 2.06 LINK O2G ANP A 801 MG MG A 803 1555 1555 2.06 LINK MG MG A 803 O HOH A 906 1555 1555 2.08 LINK O1A ANP A 801 MG MG A 803 1555 1555 2.12 LINK O2B ANP A 801 MG MG A 803 1555 1555 2.16 CISPEP 1 ILE A 147 THR A 148 0 9.30 CISPEP 2 ALA A 350 PRO A 351 0 1.59 CISPEP 3 THR A 392 ASP A 393 0 -5.99 CISPEP 4 GLN A 545 PHE A 546 0 3.23 SITE 1 AC1 27 GLU A 130 ASN A 134 ALA A 138 ASP A 173 SITE 2 AC1 27 MET A 178 ASN A 186 SER A 193 GLY A 194 SITE 3 AC1 27 GLY A 214 GLN A 215 PHE A 216 GLY A 217 SITE 4 AC1 27 VAL A 218 GLY A 219 PHE A 220 THR A 266 SITE 5 AC1 27 ARG A 417 MG A 803 HOH A 901 HOH A 906 SITE 6 AC1 27 HOH A 914 HOH A 919 HOH A 920 HOH A 921 SITE 7 AC1 27 HOH A 993 HOH A1010 HOH A1122 SITE 1 AC2 7 LYS A 166 ARG A 436 ARG A 439 HOH A1167 SITE 2 AC2 7 HOH A1184 HOH A1192 HOH A1216 SITE 1 AC3 4 ASN A 134 ANP A 801 HOH A 906 HOH A1122 CRYST1 85.146 94.509 155.456 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006433 0.00000