HEADER TRANSCRIPTION 23-JAN-13 4IVY TITLE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR ALPHA LIGAND-BINDING DOMAIN TITLE 2 IN COMPLEX WITH DYNAMIC WAY-DERIVATIVE, 7A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, UNP RESIDUES 303-549; COMPND 5 SYNONYM: ER, ER-ALPHA, ESTRADIOL RECEPTOR, NUCLEAR RECEPTOR SUBFAMILY COMPND 6 3 GROUP A MEMBER 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: RECEPTOR-INTERACTING PEPTIDE, UNP RESIDUES 687-696; COMPND 13 SYNONYM: NCOA-2, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75, BHLHE75, COMPND 14 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2, HTIF2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR, ESR1, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS NUCLEAR HORMONE RECEPTOR, TRANSCRIPTION FACTOR, LIGAND-BINDING, KEYWDS 2 NUCLEUS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,S.SRINIVASAN,A.A.PARENT,V.CAVETT,J.NOWAK,T.S.HUGHES, AUTHOR 2 D.J.KOJETIN,J.A.KATZENELLENBOGEN,K.W.NETTLES REVDAT 5 20-SEP-23 4IVY 1 REMARK REVDAT 4 26-FEB-20 4IVY 1 REMARK SEQADV REVDAT 3 15-NOV-17 4IVY 1 REMARK REVDAT 2 26-JUN-13 4IVY 1 JRNL REVDAT 1 27-MAR-13 4IVY 0 JRNL AUTH S.SRINIVASAN,J.C.NWACHUKWU,A.A.PARENT,V.CAVETT,J.NOWAK, JRNL AUTH 2 T.S.HUGHES,D.J.KOJETIN,J.A.KATZENELLENBOGEN,K.W.NETTLES JRNL TITL LIGAND BINDING DYNAMICS REWIRE CELLULAR SIGNALING VIA JRNL TITL 2 ESTROGEN RECEPTOR-ALPHA JRNL REF NAT.CHEM.BIOL. V. 9 326 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23524984 JRNL DOI 10.1038/NCHEMBIO.1214 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 32363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2260 - 4.5675 0.98 2579 157 0.2009 0.1947 REMARK 3 2 4.5675 - 3.6258 0.90 2334 149 0.1779 0.2062 REMARK 3 3 3.6258 - 3.1676 0.95 2461 151 0.2066 0.2305 REMARK 3 4 3.1676 - 2.8781 0.98 2543 151 0.2196 0.2216 REMARK 3 5 2.8781 - 2.6718 0.95 2450 154 0.2208 0.2306 REMARK 3 6 2.6718 - 2.5143 0.96 2462 152 0.2158 0.2900 REMARK 3 7 2.5143 - 2.3884 0.96 2482 158 0.2159 0.2551 REMARK 3 8 2.3884 - 2.2844 0.94 2425 142 0.2195 0.2562 REMARK 3 9 2.2844 - 2.1965 0.82 2124 131 0.2663 0.2939 REMARK 3 10 2.1965 - 2.1207 0.89 2313 124 0.2282 0.2526 REMARK 3 11 2.1207 - 2.0544 0.89 2276 143 0.2408 0.2944 REMARK 3 12 2.0544 - 1.9956 0.86 2194 144 0.2598 0.3103 REMARK 3 13 1.9956 - 1.9500 0.72 1859 105 0.2728 0.3156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.13 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 45.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18070 REMARK 3 B22 (A**2) : 3.62200 REMARK 3 B33 (A**2) : -3.44130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.35300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3994 REMARK 3 ANGLE : 0.528 5417 REMARK 3 CHIRALITY : 0.037 634 REMARK 3 PLANARITY : 0.001 669 REMARK 3 DIHEDRAL : 14.006 1509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 304:332) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9905 10.8928 -6.2876 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.3447 REMARK 3 T33: 0.1992 T12: 0.0011 REMARK 3 T13: -0.0303 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 5.4530 L22: 6.0897 REMARK 3 L33: 2.5162 L12: -3.1710 REMARK 3 L13: -1.4493 L23: 1.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.4456 S12: 0.4100 S13: 0.6496 REMARK 3 S21: -0.5141 S22: -0.3075 S23: -0.6246 REMARK 3 S31: -0.2556 S32: -0.1783 S33: -0.0517 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 333:421) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0643 0.6437 1.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.2002 REMARK 3 T33: 0.1705 T12: 0.0062 REMARK 3 T13: -0.0033 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.2326 L22: 2.4082 REMARK 3 L33: 3.4838 L12: -0.1338 REMARK 3 L13: -0.7271 L23: 1.1819 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.0674 S13: -0.1136 REMARK 3 S21: -0.0866 S22: -0.0106 S23: -0.1746 REMARK 3 S31: 0.2379 S32: 0.0870 S33: -0.0109 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 422:548) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8183 4.2225 7.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.1487 REMARK 3 T33: 0.1161 T12: -0.0025 REMARK 3 T13: 0.0191 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 4.6454 L22: 2.4702 REMARK 3 L33: 1.6392 L12: -0.5523 REMARK 3 L13: -0.4043 L23: 0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: -0.0152 S13: 0.0375 REMARK 3 S21: 0.0669 S22: -0.0730 S23: -0.0118 REMARK 3 S31: 0.1415 S32: -0.0639 S33: 0.0502 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 305:363) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1631 3.8239 36.5960 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.1232 REMARK 3 T33: 0.1559 T12: 0.0059 REMARK 3 T13: 0.0389 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.3071 L22: 2.2489 REMARK 3 L33: 3.9164 L12: -0.9325 REMARK 3 L13: -0.3642 L23: -0.2407 REMARK 3 S TENSOR REMARK 3 S11: -0.2479 S12: -0.3839 S13: 0.0036 REMARK 3 S21: 0.2388 S22: 0.1714 S23: -0.0435 REMARK 3 S31: -0.1934 S32: -0.1026 S33: -0.0257 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 364:437) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4463 8.0616 29.1254 REMARK 3 T TENSOR REMARK 3 T11: 0.2401 T22: 0.2396 REMARK 3 T33: 0.1471 T12: -0.0443 REMARK 3 T13: 0.0116 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.0207 L22: 2.9277 REMARK 3 L33: 3.9925 L12: -0.4966 REMARK 3 L13: -0.4282 L23: 0.1945 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.1844 S13: 0.1029 REMARK 3 S21: -0.0932 S22: 0.0065 S23: -0.1224 REMARK 3 S31: -0.4518 S32: 0.1409 S33: 0.0461 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 438:548) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4790 3.2176 21.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.2731 T22: 0.2785 REMARK 3 T33: 0.2435 T12: -0.0403 REMARK 3 T13: 0.0432 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 2.0484 L22: 1.3549 REMARK 3 L33: 3.5799 L12: -0.0871 REMARK 3 L13: 1.2431 L23: -0.9778 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: 0.1195 S13: -0.0916 REMARK 3 S21: -0.1474 S22: -0.0701 S23: -0.0475 REMARK 3 S31: 0.2183 S32: -0.0156 S33: 0.0118 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4IVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE I-BEAM REMARK 200 SINGLE CRYSTAL, ASYMMETRIC CUT REMARK 200 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.86900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2QA8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.05M MAGNESIUM REMARK 280 CHLORIDE, 0.067M SODIUM CHLORIDE, 0.1M TRIS, PH 8.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.77250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 303 REMARK 465 GLY A 415 REMARK 465 LYS A 416 REMARK 465 CYS A 417 REMARK 465 THR A 460 REMARK 465 PHE A 461 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 469 REMARK 465 GLU A 470 REMARK 465 GLU A 471 REMARK 465 LYS A 472 REMARK 465 LEU A 549 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 LYS B 416 REMARK 465 CYS B 417 REMARK 465 VAL B 418 REMARK 465 GLU B 419 REMARK 465 GLY B 420 REMARK 465 PHE B 461 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 LEU B 549 REMARK 465 HIS D 687 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 335 CZ NH1 NH2 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 ARG A 477 CZ NH1 NH2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 306 CG CD1 CD2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 696 O HOH C 703 1.85 REMARK 500 O GLY B 415 O HOH B 790 1.86 REMARK 500 O HOH B 774 O HOH B 777 1.87 REMARK 500 OD1 ASP A 351 O HOH A 807 1.90 REMARK 500 NH1 ARG A 412 OD2 ASP A 426 1.92 REMARK 500 N MET B 421 O HOH B 781 1.95 REMARK 500 OD2 ASP A 484 O HOH A 789 1.99 REMARK 500 O HOH B 770 O HOH B 774 2.00 REMARK 500 O LEU C 693 O HOH C 703 2.01 REMARK 500 O HOH B 783 O HOH B 801 2.02 REMARK 500 O HOH B 785 O HOH B 787 2.03 REMARK 500 O HOH B 800 O HOH B 801 2.06 REMARK 500 ND2 ASN A 359 O HOH A 740 2.09 REMARK 500 O HOH A 721 O HOH A 732 2.11 REMARK 500 O HOH B 749 O HOH B 783 2.11 REMARK 500 O ARG A 548 O HOH A 800 2.11 REMARK 500 N LYS D 688 O HOH D 701 2.11 REMARK 500 OE2 GLU A 353 O HOH A 805 2.13 REMARK 500 OG1 THR B 460 O HOH B 743 2.14 REMARK 500 NH2 ARG B 335 O HOH B 774 2.15 REMARK 500 O HOH B 784 O HOH B 785 2.16 REMARK 500 OD1 ASP A 351 OG SER A 537 2.16 REMARK 500 NH1 ARG A 434 O HOH A 799 2.19 REMARK 500 OE1 GLU B 542 O HOH B 738 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 332 NE2 HIS A 373 2645 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 332 101.58 117.83 REMARK 500 GLU A 419 105.71 98.12 REMARK 500 VAL A 458 25.07 -59.35 REMARK 500 LEU B 306 -30.34 -154.50 REMARK 500 GLN B 414 -39.63 78.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 802 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1GT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1GT B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4IU7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH WAY-DERIVATIVE 2B REMARK 900 RELATED ID: 4IUI RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH WAY-DERIVATIVE 4A REMARK 900 RELATED ID: 4IV2 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH WAY-DERIVATIVE 5A REMARK 900 RELATED ID: 4IV4 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH WAY-DERIVATIVE 5B REMARK 900 RELATED ID: 4IVW RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH WAY-DERIVATIVE 6B REMARK 900 RELATED ID: 4IW6 RELATED DB: PDB REMARK 900 RELATED ID: 4IW8 RELATED DB: PDB REMARK 900 RELATED ID: 4IWC RELATED DB: PDB REMARK 900 RELATED ID: 4IWF RELATED DB: PDB DBREF 4IVY A 303 549 UNP P03372 ESR1_HUMAN 303 549 DBREF 4IVY C 687 696 UNP Q15596 NCOA2_HUMAN 687 696 DBREF 4IVY B 303 549 UNP P03372 ESR1_HUMAN 303 549 DBREF 4IVY D 687 696 UNP Q15596 NCOA2_HUMAN 687 696 SEQADV 4IVY SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 4IVY SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 247 LYS ASN SER LEU ALA LEU SER LEU THR ALA ASP GLN MET SEQRES 2 A 247 VAL SER ALA LEU LEU ASP ALA GLU PRO PRO ILE LEU TYR SEQRES 3 A 247 SER GLU TYR ASP PRO THR ARG PRO PHE SER GLU ALA SER SEQRES 4 A 247 MET MET GLY LEU LEU THR ASN LEU ALA ASP ARG GLU LEU SEQRES 5 A 247 VAL HIS MET ILE ASN TRP ALA LYS ARG VAL PRO GLY PHE SEQRES 6 A 247 VAL ASP LEU THR LEU HIS ASP GLN VAL HIS LEU LEU GLU SEQRES 7 A 247 CYS ALA TRP LEU GLU ILE LEU MET ILE GLY LEU VAL TRP SEQRES 8 A 247 ARG SER MET GLU HIS PRO GLY LYS LEU LEU PHE ALA PRO SEQRES 9 A 247 ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS CYS VAL GLU SEQRES 10 A 247 GLY MET VAL GLU ILE PHE ASP MET LEU LEU ALA THR SER SEQRES 11 A 247 SER ARG PHE ARG MET MET ASN LEU GLN GLY GLU GLU PHE SEQRES 12 A 247 VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SER GLY VAL SEQRES 13 A 247 TYR THR PHE LEU SER SER THR LEU LYS SER LEU GLU GLU SEQRES 14 A 247 LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS ILE THR ASP SEQRES 15 A 247 THR LEU ILE HIS LEU MET ALA LYS ALA GLY LEU THR LEU SEQRES 16 A 247 GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU LEU LEU ILE SEQRES 17 A 247 LEU SER HIS ILE ARG HIS MET SER ASN LYS GLY MET GLU SEQRES 18 A 247 HIS LEU TYR SER MET LYS CYS LYS ASN VAL VAL PRO LEU SEQRES 19 A 247 SER ASP LEU LEU LEU GLU MET LEU ASP ALA HIS ARG LEU SEQRES 1 C 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SEQRES 1 B 247 LYS ASN SER LEU ALA LEU SER LEU THR ALA ASP GLN MET SEQRES 2 B 247 VAL SER ALA LEU LEU ASP ALA GLU PRO PRO ILE LEU TYR SEQRES 3 B 247 SER GLU TYR ASP PRO THR ARG PRO PHE SER GLU ALA SER SEQRES 4 B 247 MET MET GLY LEU LEU THR ASN LEU ALA ASP ARG GLU LEU SEQRES 5 B 247 VAL HIS MET ILE ASN TRP ALA LYS ARG VAL PRO GLY PHE SEQRES 6 B 247 VAL ASP LEU THR LEU HIS ASP GLN VAL HIS LEU LEU GLU SEQRES 7 B 247 CYS ALA TRP LEU GLU ILE LEU MET ILE GLY LEU VAL TRP SEQRES 8 B 247 ARG SER MET GLU HIS PRO GLY LYS LEU LEU PHE ALA PRO SEQRES 9 B 247 ASN LEU LEU LEU ASP ARG ASN GLN GLY LYS CYS VAL GLU SEQRES 10 B 247 GLY MET VAL GLU ILE PHE ASP MET LEU LEU ALA THR SER SEQRES 11 B 247 SER ARG PHE ARG MET MET ASN LEU GLN GLY GLU GLU PHE SEQRES 12 B 247 VAL CYS LEU LYS SER ILE ILE LEU LEU ASN SER GLY VAL SEQRES 13 B 247 TYR THR PHE LEU SER SER THR LEU LYS SER LEU GLU GLU SEQRES 14 B 247 LYS ASP HIS ILE HIS ARG VAL LEU ASP LYS ILE THR ASP SEQRES 15 B 247 THR LEU ILE HIS LEU MET ALA LYS ALA GLY LEU THR LEU SEQRES 16 B 247 GLN GLN GLN HIS GLN ARG LEU ALA GLN LEU LEU LEU ILE SEQRES 17 B 247 LEU SER HIS ILE ARG HIS MET SER ASN LYS GLY MET GLU SEQRES 18 B 247 HIS LEU TYR SER MET LYS CYS LYS ASN VAL VAL PRO LEU SEQRES 19 B 247 SER ASP LEU LEU LEU GLU MET LEU ASP ALA HIS ARG LEU SEQRES 1 D 10 HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP HET 1GT A 601 25 HET 1GT B 601 25 HETNAM 1GT 4-[1-(BUT-3-EN-1-YL)-7-(TRIFLUOROMETHYL)-1H-INDAZOL-3- HETNAM 2 1GT YL]BENZENE-1,3-DIOL FORMUL 5 1GT 2(C18 H15 F3 N2 O2) FORMUL 7 HOH *222(H2 O) HELIX 1 1 LEU A 306 LEU A 310 5 5 HELIX 2 2 THR A 311 GLU A 323 1 13 HELIX 3 3 SER A 338 LYS A 362 1 25 HELIX 4 4 THR A 371 SER A 395 1 25 HELIX 5 6 GLY A 420 MET A 438 1 19 HELIX 6 7 GLN A 441 SER A 456 1 16 HELIX 7 8 HIS A 474 ALA A 493 1 20 HELIX 8 9 THR A 496 ASN A 532 1 37 HELIX 9 10 SER A 537 HIS A 547 1 11 HELIX 10 11 LYS C 688 LEU C 694 1 7 HELIX 11 12 THR B 311 ALA B 322 1 12 HELIX 12 13 SER B 338 LYS B 362 1 25 HELIX 13 14 GLY B 366 LEU B 370 5 5 HELIX 14 15 THR B 371 MET B 396 1 26 HELIX 15 16 VAL B 422 ASN B 439 1 18 HELIX 16 17 GLN B 441 SER B 456 1 16 HELIX 17 18 LEU B 469 ALA B 493 1 25 HELIX 18 19 THR B 496 ASN B 532 1 37 HELIX 19 20 SER B 537 ARG B 548 1 12 HELIX 20 21 ILE D 689 ASP D 696 1 8 SHEET 1 A 2 LYS A 401 ALA A 405 0 SHEET 2 A 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 B 2 LYS B 401 ALA B 405 0 SHEET 2 B 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SITE 1 AC1 13 MET A 343 GLU A 353 LEU A 387 MET A 388 SITE 2 AC1 13 LEU A 391 ARG A 394 MET A 421 ILE A 424 SITE 3 AC1 13 PHE A 425 GLY A 521 HIS A 524 LEU A 525 SITE 4 AC1 13 HOH A 703 SITE 1 AC2 13 LEU B 346 GLU B 353 LEU B 387 MET B 388 SITE 2 AC2 13 LEU B 391 ARG B 394 MET B 421 PHE B 425 SITE 3 AC2 13 LEU B 428 GLY B 521 LEU B 525 MET B 528 SITE 4 AC2 13 HOH B 706 CRYST1 54.746 81.545 58.450 90.00 109.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018266 0.000000 0.006601 0.00000 SCALE2 0.000000 0.012263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018192 0.00000