data_4IWT # _entry.id 4IWT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4IWT pdb_00004iwt 10.2210/pdb4iwt/pdb RCSB RCSB077308 ? ? WWPDB D_1000077308 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4IWT _pdbx_database_status.recvd_initial_deposition_date 2013-01-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sandalova, T.' 1 'Mellroth, P.' 2 'Achour, A.' 3 # _citation.id primary _citation.title 'Structural and functional insights into peptidoglycan access for the lytic amidase LytA of Streptococcus pneumoniae.' _citation.journal_abbrev MBio _citation.journal_volume 5 _citation.page_first e01120 _citation.page_last e01113 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2150-7511 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24520066 _citation.pdbx_database_id_DOI 10.1128/mBio.01120-13 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mellroth, P.' 1 ? primary 'Sandalova, T.' 2 ? primary 'Kikhney, A.' 3 ? primary 'Vilaplana, F.' 4 ? primary 'Hesek, D.' 5 ? primary 'Lee, M.' 6 ? primary 'Mobashery, S.' 7 ? primary 'Normark, S.' 8 ? primary 'Svergun, D.' 9 ? primary 'Henriques-Normark, B.' 10 ? primary 'Achour, A.' 11 ? # _cell.entry_id 4IWT _cell.length_a 40.581 _cell.length_b 113.361 _cell.length_c 40.641 _cell.angle_alpha 90.00 _cell.angle_beta 94.91 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4IWT _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lytic amidase' 16953.719 2 3.5.1.28 ? 'UNP residues 173-318' ? 2 non-polymer syn 'CHOLINE ION' 104.171 10 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SAATGWQKNGTGYWYVHSDGSYPKDKFEKINGTWYYFDGSGYMLSDRWKKHTDGNWYYFDQSGEMATGWKKIADKWYYFD VEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK ; _entity_poly.pdbx_seq_one_letter_code_can ;SAATGWQKNGTGYWYVHSDGSYPKDKFEKINGTWYYFDGSGYMLSDRWKKHTDGNWYYFDQSGEMATGWKKIADKWYYFD VEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 ALA n 1 4 THR n 1 5 GLY n 1 6 TRP n 1 7 GLN n 1 8 LYS n 1 9 ASN n 1 10 GLY n 1 11 THR n 1 12 GLY n 1 13 TYR n 1 14 TRP n 1 15 TYR n 1 16 VAL n 1 17 HIS n 1 18 SER n 1 19 ASP n 1 20 GLY n 1 21 SER n 1 22 TYR n 1 23 PRO n 1 24 LYS n 1 25 ASP n 1 26 LYS n 1 27 PHE n 1 28 GLU n 1 29 LYS n 1 30 ILE n 1 31 ASN n 1 32 GLY n 1 33 THR n 1 34 TRP n 1 35 TYR n 1 36 TYR n 1 37 PHE n 1 38 ASP n 1 39 GLY n 1 40 SER n 1 41 GLY n 1 42 TYR n 1 43 MET n 1 44 LEU n 1 45 SER n 1 46 ASP n 1 47 ARG n 1 48 TRP n 1 49 LYS n 1 50 LYS n 1 51 HIS n 1 52 THR n 1 53 ASP n 1 54 GLY n 1 55 ASN n 1 56 TRP n 1 57 TYR n 1 58 TYR n 1 59 PHE n 1 60 ASP n 1 61 GLN n 1 62 SER n 1 63 GLY n 1 64 GLU n 1 65 MET n 1 66 ALA n 1 67 THR n 1 68 GLY n 1 69 TRP n 1 70 LYS n 1 71 LYS n 1 72 ILE n 1 73 ALA n 1 74 ASP n 1 75 LYS n 1 76 TRP n 1 77 TYR n 1 78 TYR n 1 79 PHE n 1 80 ASP n 1 81 VAL n 1 82 GLU n 1 83 GLY n 1 84 ALA n 1 85 MET n 1 86 LYS n 1 87 THR n 1 88 GLY n 1 89 TRP n 1 90 VAL n 1 91 LYS n 1 92 TYR n 1 93 LYS n 1 94 ASP n 1 95 THR n 1 96 TRP n 1 97 TYR n 1 98 TYR n 1 99 LEU n 1 100 ASP n 1 101 ALA n 1 102 LYS n 1 103 GLU n 1 104 GLY n 1 105 ALA n 1 106 MET n 1 107 VAL n 1 108 SER n 1 109 ASN n 1 110 ALA n 1 111 PHE n 1 112 ILE n 1 113 GLN n 1 114 SER n 1 115 ALA n 1 116 ASP n 1 117 GLY n 1 118 THR n 1 119 GLY n 1 120 TRP n 1 121 TYR n 1 122 TYR n 1 123 LEU n 1 124 LYS n 1 125 PRO n 1 126 ASP n 1 127 GLY n 1 128 THR n 1 129 LEU n 1 130 ALA n 1 131 ASP n 1 132 LYS n 1 133 PRO n 1 134 GLU n 1 135 PHE n 1 136 THR n 1 137 VAL n 1 138 GLU n 1 139 PRO n 1 140 ASP n 1 141 GLY n 1 142 LEU n 1 143 ILE n 1 144 THR n 1 145 VAL n 1 146 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lytA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 700673' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1105119 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21d _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code J1UPV3_STREE _struct_ref.pdbx_db_accession J1UPV3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SAATGWQKNGTGYWYVHSDGSYPKDKFEKINGTWYYFDGSGYMLSDRWKKHTDGNWYYFDQSGEMATGWKKIADKWYYFD VEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK ; _struct_ref.pdbx_align_begin 173 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4IWT A 1 ? 146 ? J1UPV3 173 ? 318 ? 173 318 2 1 4IWT B 1 ? 146 ? J1UPV3 173 ? 318 ? 173 318 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CHT non-polymer . 'CHOLINE ION' ? 'C5 H14 N O 1' 104.171 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4IWT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.7M sodium citrate tribasic dihydrate, 0.1M bis-Tris propane, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-05-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(311)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9762 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9762 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4IWT _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.5 _reflns.d_resolution_high 2.6 _reflns.number_obs 10591 _reflns.number_all 10591 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 90.1 _reflns_shell.Rmerge_I_obs 0.61 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4IWT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10078 _refine.ls_number_reflns_all 10078 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 93.72 _refine.ls_R_factor_obs 0.20176 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19836 _refine.ls_R_factor_R_free 0.27337 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 511 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.878 _refine.B_iso_mean 35.195 _refine.aniso_B[1][1] 3.54 _refine.aniso_B[2][2] -4.74 _refine.aniso_B[3][3] 1.24 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.78 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 'PDB ENTRY 1GVN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 4.141 _refine.pdbx_overall_ESU_R_Free 0.368 _refine.overall_SU_ML 0.268 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 12.946 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2408 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 2509 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.020 ? 2560 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.714 1.932 ? 3474 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.763 5.000 ? 290 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.207 24.262 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.396 15.000 ? 382 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.743 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.143 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1974 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.600 _refine_ls_shell.d_res_low 2.667 _refine_ls_shell.number_reflns_R_work 709 _refine_ls_shell.R_factor_R_work 0.341 _refine_ls_shell.percent_reflns_obs 89.41 _refine_ls_shell.R_factor_R_free 0.409 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 given ? -0.085106 0.000164 0.996372 0.000288 -1.000000 0.000189 0.996372 0.000303 0.085106 0.02462 27.05620 -0.02574 # _struct.entry_id 4IWT _struct.title 'Crystal structure of the C-teminal choline-binding domain of the Streptococcus pneumoniae prophage LytA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4IWT _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'solenoid fold, LytA autolysin, Peptidoglycan lysis, Virulence factor, choline-binding domain, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? G ? 2 ? H ? 2 ? I ? 2 ? J ? 2 ? K ? 2 ? L ? 2 ? M ? 2 ? N ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel K 1 2 ? anti-parallel L 1 2 ? anti-parallel M 1 2 ? anti-parallel N 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 6 ? LYS A 8 ? TRP A 178 LYS A 180 A 2 TYR A 13 ? TYR A 15 ? TYR A 185 TYR A 187 B 1 LYS A 26 ? ILE A 30 ? LYS A 198 ILE A 202 B 2 THR A 33 ? PHE A 37 ? THR A 205 PHE A 209 C 1 ARG A 47 ? LYS A 50 ? ARG A 219 LYS A 222 C 2 TRP A 56 ? PHE A 59 ? TRP A 228 PHE A 231 D 1 GLY A 68 ? LYS A 71 ? GLY A 240 LYS A 243 D 2 TRP A 76 ? PHE A 79 ? TRP A 248 PHE A 251 E 1 GLY A 88 ? TYR A 92 ? GLY A 260 TYR A 264 E 2 THR A 95 ? LEU A 99 ? THR A 267 LEU A 271 F 1 ALA A 110 ? GLN A 113 ? ALA A 282 GLN A 285 F 2 TRP A 120 ? LEU A 123 ? TRP A 292 LEU A 295 G 1 PHE A 135 ? VAL A 137 ? PHE A 307 VAL A 309 G 2 ILE A 143 ? VAL A 145 ? ILE A 315 VAL A 317 H 1 TRP B 6 ? LYS B 8 ? TRP B 178 LYS B 180 H 2 TYR B 13 ? TYR B 15 ? TYR B 185 TYR B 187 I 1 LYS B 26 ? ILE B 30 ? LYS B 198 ILE B 202 I 2 THR B 33 ? PHE B 37 ? THR B 205 PHE B 209 J 1 ARG B 47 ? LYS B 50 ? ARG B 219 LYS B 222 J 2 TRP B 56 ? PHE B 59 ? TRP B 228 PHE B 231 K 1 GLY B 68 ? LYS B 71 ? GLY B 240 LYS B 243 K 2 TRP B 76 ? PHE B 79 ? TRP B 248 PHE B 251 L 1 GLY B 88 ? TYR B 92 ? GLY B 260 TYR B 264 L 2 THR B 95 ? LEU B 99 ? THR B 267 LEU B 271 M 1 ALA B 110 ? GLN B 113 ? ALA B 282 GLN B 285 M 2 TRP B 120 ? LEU B 123 ? TRP B 292 LEU B 295 N 1 PHE B 135 ? VAL B 137 ? PHE B 307 VAL B 309 N 2 ILE B 143 ? VAL B 145 ? ILE B 315 VAL B 317 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 7 ? N GLN A 179 O TRP A 14 ? O TRP A 186 B 1 2 N GLU A 28 ? N GLU A 200 O TYR A 35 ? O TYR A 207 C 1 2 N LYS A 49 ? N LYS A 221 O TYR A 57 ? O TYR A 229 D 1 2 N LYS A 70 ? N LYS A 242 O TYR A 77 ? O TYR A 249 E 1 2 N GLY A 88 ? N GLY A 260 O LEU A 99 ? O LEU A 271 F 1 2 N ILE A 112 ? N ILE A 284 O TYR A 121 ? O TYR A 293 G 1 2 N THR A 136 ? N THR A 308 O THR A 144 ? O THR A 316 H 1 2 N GLN B 7 ? N GLN B 179 O TRP B 14 ? O TRP B 186 I 1 2 N ILE B 30 ? N ILE B 202 O THR B 33 ? O THR B 205 J 1 2 N LYS B 49 ? N LYS B 221 O TYR B 57 ? O TYR B 229 K 1 2 N LYS B 70 ? N LYS B 242 O TYR B 77 ? O TYR B 249 L 1 2 N GLY B 88 ? N GLY B 260 O LEU B 99 ? O LEU B 271 M 1 2 N ILE B 112 ? N ILE B 284 O TYR B 121 ? O TYR B 293 N 1 2 N THR B 136 ? N THR B 308 O THR B 144 ? O THR B 316 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CHT 400 ? 6 'BINDING SITE FOR RESIDUE CHT A 400' AC2 Software A CHT 401 ? 3 'BINDING SITE FOR RESIDUE CHT A 401' AC3 Software A CHT 402 ? 4 'BINDING SITE FOR RESIDUE CHT A 402' AC4 Software A CHT 403 ? 2 'BINDING SITE FOR RESIDUE CHT A 403' AC5 Software A CHT 404 ? 3 'BINDING SITE FOR RESIDUE CHT A 404' AC6 Software B CHT 400 ? 6 'BINDING SITE FOR RESIDUE CHT B 400' AC7 Software B CHT 401 ? 1 'BINDING SITE FOR RESIDUE CHT B 401' AC8 Software B CHT 402 ? 2 'BINDING SITE FOR RESIDUE CHT B 402' AC9 Software B CHT 403 ? 3 'BINDING SITE FOR RESIDUE CHT B 403' BC1 Software B CHT 404 ? 2 'BINDING SITE FOR RESIDUE CHT B 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TRP A 14 ? TRP A 186 . ? 1_555 ? 2 AC1 6 SER A 40 ? SER A 212 . ? 1_555 ? 3 AC1 6 TYR A 42 ? TYR A 214 . ? 1_555 ? 4 AC1 6 ASN B 9 ? ASN B 181 . ? 1_456 ? 5 AC1 6 TRP B 14 ? TRP B 186 . ? 1_456 ? 6 AC1 6 CHT H . ? CHT B 400 . ? 1_456 ? 7 AC2 3 TRP A 48 ? TRP A 220 . ? 1_555 ? 8 AC2 3 TRP A 56 ? TRP A 228 . ? 1_555 ? 9 AC2 3 GLU A 103 ? GLU A 275 . ? 1_555 ? 10 AC3 4 TRP A 69 ? TRP A 241 . ? 1_555 ? 11 AC3 4 TRP A 76 ? TRP A 248 . ? 1_555 ? 12 AC3 4 TYR A 97 ? TYR A 269 . ? 1_555 ? 13 AC3 4 HOH M . ? HOH A 507 . ? 1_555 ? 14 AC4 2 TYR A 57 ? TYR A 229 . ? 1_555 ? 15 AC4 2 GLU A 82 ? GLU A 254 . ? 1_555 ? 16 AC5 3 TRP A 89 ? TRP A 261 . ? 1_555 ? 17 AC5 3 TRP A 96 ? TRP A 268 . ? 1_555 ? 18 AC5 3 TYR A 121 ? TYR A 293 . ? 1_555 ? 19 AC6 6 ASN A 9 ? ASN A 181 . ? 1_654 ? 20 AC6 6 TRP A 14 ? TRP A 186 . ? 1_654 ? 21 AC6 6 CHT C . ? CHT A 400 . ? 1_654 ? 22 AC6 6 TRP B 14 ? TRP B 186 . ? 1_555 ? 23 AC6 6 SER B 40 ? SER B 212 . ? 1_555 ? 24 AC6 6 TYR B 42 ? TYR B 214 . ? 1_555 ? 25 AC7 1 GLU B 103 ? GLU B 275 . ? 1_555 ? 26 AC8 2 TRP B 76 ? TRP B 248 . ? 1_555 ? 27 AC8 2 TYR B 97 ? TYR B 269 . ? 1_555 ? 28 AC9 3 PHE B 27 ? PHE B 199 . ? 1_555 ? 29 AC9 3 TYR B 57 ? TYR B 229 . ? 1_555 ? 30 AC9 3 GLU B 82 ? GLU B 254 . ? 1_555 ? 31 BC1 2 TRP B 89 ? TRP B 261 . ? 1_555 ? 32 BC1 2 TYR B 121 ? TYR B 293 . ? 1_555 ? # _database_PDB_matrix.entry_id 4IWT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4IWT _atom_sites.fract_transf_matrix[1][1] 0.024642 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002117 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024696 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 173 173 SER SER A . n A 1 2 ALA 2 174 174 ALA ALA A . n A 1 3 ALA 3 175 175 ALA ALA A . n A 1 4 THR 4 176 176 THR THR A . n A 1 5 GLY 5 177 177 GLY GLY A . n A 1 6 TRP 6 178 178 TRP TRP A . n A 1 7 GLN 7 179 179 GLN GLN A . n A 1 8 LYS 8 180 180 LYS LYS A . n A 1 9 ASN 9 181 181 ASN ASN A . n A 1 10 GLY 10 182 182 GLY GLY A . n A 1 11 THR 11 183 183 THR THR A . n A 1 12 GLY 12 184 184 GLY GLY A . n A 1 13 TYR 13 185 185 TYR TYR A . n A 1 14 TRP 14 186 186 TRP TRP A . n A 1 15 TYR 15 187 187 TYR TYR A . n A 1 16 VAL 16 188 188 VAL VAL A . n A 1 17 HIS 17 189 189 HIS HIS A . n A 1 18 SER 18 190 190 SER SER A . n A 1 19 ASP 19 191 191 ASP ASP A . n A 1 20 GLY 20 192 192 GLY GLY A . n A 1 21 SER 21 193 193 SER SER A . n A 1 22 TYR 22 194 194 TYR TYR A . n A 1 23 PRO 23 195 195 PRO PRO A . n A 1 24 LYS 24 196 196 LYS LYS A . n A 1 25 ASP 25 197 197 ASP ASP A . n A 1 26 LYS 26 198 198 LYS LYS A . n A 1 27 PHE 27 199 199 PHE PHE A . n A 1 28 GLU 28 200 200 GLU GLU A . n A 1 29 LYS 29 201 201 LYS LYS A . n A 1 30 ILE 30 202 202 ILE ILE A . n A 1 31 ASN 31 203 203 ASN ASN A . n A 1 32 GLY 32 204 204 GLY GLY A . n A 1 33 THR 33 205 205 THR THR A . n A 1 34 TRP 34 206 206 TRP TRP A . n A 1 35 TYR 35 207 207 TYR TYR A . n A 1 36 TYR 36 208 208 TYR TYR A . n A 1 37 PHE 37 209 209 PHE PHE A . n A 1 38 ASP 38 210 210 ASP ASP A . n A 1 39 GLY 39 211 211 GLY GLY A . n A 1 40 SER 40 212 212 SER SER A . n A 1 41 GLY 41 213 213 GLY GLY A . n A 1 42 TYR 42 214 214 TYR TYR A . n A 1 43 MET 43 215 215 MET MET A . n A 1 44 LEU 44 216 216 LEU LEU A . n A 1 45 SER 45 217 217 SER SER A . n A 1 46 ASP 46 218 218 ASP ASP A . n A 1 47 ARG 47 219 219 ARG ARG A . n A 1 48 TRP 48 220 220 TRP TRP A . n A 1 49 LYS 49 221 221 LYS LYS A . n A 1 50 LYS 50 222 222 LYS LYS A . n A 1 51 HIS 51 223 223 HIS HIS A . n A 1 52 THR 52 224 224 THR THR A . n A 1 53 ASP 53 225 225 ASP ASP A . n A 1 54 GLY 54 226 226 GLY GLY A . n A 1 55 ASN 55 227 227 ASN ASN A . n A 1 56 TRP 56 228 228 TRP TRP A . n A 1 57 TYR 57 229 229 TYR TYR A . n A 1 58 TYR 58 230 230 TYR TYR A . n A 1 59 PHE 59 231 231 PHE PHE A . n A 1 60 ASP 60 232 232 ASP ASP A . n A 1 61 GLN 61 233 233 GLN GLN A . n A 1 62 SER 62 234 234 SER SER A . n A 1 63 GLY 63 235 235 GLY GLY A . n A 1 64 GLU 64 236 236 GLU GLU A . n A 1 65 MET 65 237 237 MET MET A . n A 1 66 ALA 66 238 238 ALA ALA A . n A 1 67 THR 67 239 239 THR THR A . n A 1 68 GLY 68 240 240 GLY GLY A . n A 1 69 TRP 69 241 241 TRP TRP A . n A 1 70 LYS 70 242 242 LYS LYS A . n A 1 71 LYS 71 243 243 LYS LYS A . n A 1 72 ILE 72 244 244 ILE ILE A . n A 1 73 ALA 73 245 245 ALA ALA A . n A 1 74 ASP 74 246 246 ASP ASP A . n A 1 75 LYS 75 247 247 LYS LYS A . n A 1 76 TRP 76 248 248 TRP TRP A . n A 1 77 TYR 77 249 249 TYR TYR A . n A 1 78 TYR 78 250 250 TYR TYR A . n A 1 79 PHE 79 251 251 PHE PHE A . n A 1 80 ASP 80 252 252 ASP ASP A . n A 1 81 VAL 81 253 253 VAL VAL A . n A 1 82 GLU 82 254 254 GLU GLU A . n A 1 83 GLY 83 255 255 GLY GLY A . n A 1 84 ALA 84 256 256 ALA ALA A . n A 1 85 MET 85 257 257 MET MET A . n A 1 86 LYS 86 258 258 LYS LYS A . n A 1 87 THR 87 259 259 THR THR A . n A 1 88 GLY 88 260 260 GLY GLY A . n A 1 89 TRP 89 261 261 TRP TRP A . n A 1 90 VAL 90 262 262 VAL VAL A . n A 1 91 LYS 91 263 263 LYS LYS A . n A 1 92 TYR 92 264 264 TYR TYR A . n A 1 93 LYS 93 265 265 LYS LYS A . n A 1 94 ASP 94 266 266 ASP ASP A . n A 1 95 THR 95 267 267 THR THR A . n A 1 96 TRP 96 268 268 TRP TRP A . n A 1 97 TYR 97 269 269 TYR TYR A . n A 1 98 TYR 98 270 270 TYR TYR A . n A 1 99 LEU 99 271 271 LEU LEU A . n A 1 100 ASP 100 272 272 ASP ASP A . n A 1 101 ALA 101 273 273 ALA ALA A . n A 1 102 LYS 102 274 274 LYS LYS A . n A 1 103 GLU 103 275 275 GLU GLU A . n A 1 104 GLY 104 276 276 GLY GLY A . n A 1 105 ALA 105 277 277 ALA ALA A . n A 1 106 MET 106 278 278 MET MET A . n A 1 107 VAL 107 279 279 VAL VAL A . n A 1 108 SER 108 280 280 SER SER A . n A 1 109 ASN 109 281 281 ASN ASN A . n A 1 110 ALA 110 282 282 ALA ALA A . n A 1 111 PHE 111 283 283 PHE PHE A . n A 1 112 ILE 112 284 284 ILE ILE A . n A 1 113 GLN 113 285 285 GLN GLN A . n A 1 114 SER 114 286 286 SER SER A . n A 1 115 ALA 115 287 287 ALA ALA A . n A 1 116 ASP 116 288 288 ASP ASP A . n A 1 117 GLY 117 289 289 GLY GLY A . n A 1 118 THR 118 290 290 THR THR A . n A 1 119 GLY 119 291 291 GLY GLY A . n A 1 120 TRP 120 292 292 TRP TRP A . n A 1 121 TYR 121 293 293 TYR TYR A . n A 1 122 TYR 122 294 294 TYR TYR A . n A 1 123 LEU 123 295 295 LEU LEU A . n A 1 124 LYS 124 296 296 LYS LYS A . n A 1 125 PRO 125 297 297 PRO PRO A . n A 1 126 ASP 126 298 298 ASP ASP A . n A 1 127 GLY 127 299 299 GLY GLY A . n A 1 128 THR 128 300 300 THR THR A . n A 1 129 LEU 129 301 301 LEU LEU A . n A 1 130 ALA 130 302 302 ALA ALA A . n A 1 131 ASP 131 303 303 ASP ASP A . n A 1 132 LYS 132 304 304 LYS LYS A . n A 1 133 PRO 133 305 305 PRO PRO A . n A 1 134 GLU 134 306 306 GLU GLU A . n A 1 135 PHE 135 307 307 PHE PHE A . n A 1 136 THR 136 308 308 THR THR A . n A 1 137 VAL 137 309 309 VAL VAL A . n A 1 138 GLU 138 310 310 GLU GLU A . n A 1 139 PRO 139 311 311 PRO PRO A . n A 1 140 ASP 140 312 312 ASP ASP A . n A 1 141 GLY 141 313 313 GLY GLY A . n A 1 142 LEU 142 314 314 LEU LEU A . n A 1 143 ILE 143 315 315 ILE ILE A . n A 1 144 THR 144 316 316 THR THR A . n A 1 145 VAL 145 317 317 VAL VAL A . n A 1 146 LYS 146 318 318 LYS LYS A . n B 1 1 SER 1 173 173 SER SER B . n B 1 2 ALA 2 174 174 ALA ALA B . n B 1 3 ALA 3 175 175 ALA ALA B . n B 1 4 THR 4 176 176 THR THR B . n B 1 5 GLY 5 177 177 GLY GLY B . n B 1 6 TRP 6 178 178 TRP TRP B . n B 1 7 GLN 7 179 179 GLN GLN B . n B 1 8 LYS 8 180 180 LYS LYS B . n B 1 9 ASN 9 181 181 ASN ASN B . n B 1 10 GLY 10 182 182 GLY GLY B . n B 1 11 THR 11 183 183 THR THR B . n B 1 12 GLY 12 184 184 GLY GLY B . n B 1 13 TYR 13 185 185 TYR TYR B . n B 1 14 TRP 14 186 186 TRP TRP B . n B 1 15 TYR 15 187 187 TYR TYR B . n B 1 16 VAL 16 188 188 VAL VAL B . n B 1 17 HIS 17 189 189 HIS HIS B . n B 1 18 SER 18 190 190 SER SER B . n B 1 19 ASP 19 191 191 ASP ASP B . n B 1 20 GLY 20 192 192 GLY GLY B . n B 1 21 SER 21 193 193 SER SER B . n B 1 22 TYR 22 194 194 TYR TYR B . n B 1 23 PRO 23 195 195 PRO PRO B . n B 1 24 LYS 24 196 196 LYS LYS B . n B 1 25 ASP 25 197 197 ASP ASP B . n B 1 26 LYS 26 198 198 LYS LYS B . n B 1 27 PHE 27 199 199 PHE PHE B . n B 1 28 GLU 28 200 200 GLU GLU B . n B 1 29 LYS 29 201 201 LYS LYS B . n B 1 30 ILE 30 202 202 ILE ILE B . n B 1 31 ASN 31 203 203 ASN ASN B . n B 1 32 GLY 32 204 204 GLY GLY B . n B 1 33 THR 33 205 205 THR THR B . n B 1 34 TRP 34 206 206 TRP TRP B . n B 1 35 TYR 35 207 207 TYR TYR B . n B 1 36 TYR 36 208 208 TYR TYR B . n B 1 37 PHE 37 209 209 PHE PHE B . n B 1 38 ASP 38 210 210 ASP ASP B . n B 1 39 GLY 39 211 211 GLY GLY B . n B 1 40 SER 40 212 212 SER SER B . n B 1 41 GLY 41 213 213 GLY GLY B . n B 1 42 TYR 42 214 214 TYR TYR B . n B 1 43 MET 43 215 215 MET MET B . n B 1 44 LEU 44 216 216 LEU LEU B . n B 1 45 SER 45 217 217 SER SER B . n B 1 46 ASP 46 218 218 ASP ASP B . n B 1 47 ARG 47 219 219 ARG ARG B . n B 1 48 TRP 48 220 220 TRP TRP B . n B 1 49 LYS 49 221 221 LYS LYS B . n B 1 50 LYS 50 222 222 LYS LYS B . n B 1 51 HIS 51 223 223 HIS HIS B . n B 1 52 THR 52 224 224 THR THR B . n B 1 53 ASP 53 225 225 ASP ASP B . n B 1 54 GLY 54 226 226 GLY GLY B . n B 1 55 ASN 55 227 227 ASN ASN B . n B 1 56 TRP 56 228 228 TRP TRP B . n B 1 57 TYR 57 229 229 TYR TYR B . n B 1 58 TYR 58 230 230 TYR TYR B . n B 1 59 PHE 59 231 231 PHE PHE B . n B 1 60 ASP 60 232 232 ASP ASP B . n B 1 61 GLN 61 233 233 GLN GLN B . n B 1 62 SER 62 234 234 SER SER B . n B 1 63 GLY 63 235 235 GLY GLY B . n B 1 64 GLU 64 236 236 GLU GLU B . n B 1 65 MET 65 237 237 MET MET B . n B 1 66 ALA 66 238 238 ALA ALA B . n B 1 67 THR 67 239 239 THR THR B . n B 1 68 GLY 68 240 240 GLY GLY B . n B 1 69 TRP 69 241 241 TRP TRP B . n B 1 70 LYS 70 242 242 LYS LYS B . n B 1 71 LYS 71 243 243 LYS LYS B . n B 1 72 ILE 72 244 244 ILE ILE B . n B 1 73 ALA 73 245 245 ALA ALA B . n B 1 74 ASP 74 246 246 ASP ASP B . n B 1 75 LYS 75 247 247 LYS LYS B . n B 1 76 TRP 76 248 248 TRP TRP B . n B 1 77 TYR 77 249 249 TYR TYR B . n B 1 78 TYR 78 250 250 TYR TYR B . n B 1 79 PHE 79 251 251 PHE PHE B . n B 1 80 ASP 80 252 252 ASP ASP B . n B 1 81 VAL 81 253 253 VAL VAL B . n B 1 82 GLU 82 254 254 GLU GLU B . n B 1 83 GLY 83 255 255 GLY GLY B . n B 1 84 ALA 84 256 256 ALA ALA B . n B 1 85 MET 85 257 257 MET MET B . n B 1 86 LYS 86 258 258 LYS LYS B . n B 1 87 THR 87 259 259 THR THR B . n B 1 88 GLY 88 260 260 GLY GLY B . n B 1 89 TRP 89 261 261 TRP TRP B . n B 1 90 VAL 90 262 262 VAL VAL B . n B 1 91 LYS 91 263 263 LYS LYS B . n B 1 92 TYR 92 264 264 TYR TYR B . n B 1 93 LYS 93 265 265 LYS LYS B . n B 1 94 ASP 94 266 266 ASP ASP B . n B 1 95 THR 95 267 267 THR THR B . n B 1 96 TRP 96 268 268 TRP TRP B . n B 1 97 TYR 97 269 269 TYR TYR B . n B 1 98 TYR 98 270 270 TYR TYR B . n B 1 99 LEU 99 271 271 LEU LEU B . n B 1 100 ASP 100 272 272 ASP ASP B . n B 1 101 ALA 101 273 273 ALA ALA B . n B 1 102 LYS 102 274 274 LYS LYS B . n B 1 103 GLU 103 275 275 GLU GLU B . n B 1 104 GLY 104 276 276 GLY GLY B . n B 1 105 ALA 105 277 277 ALA ALA B . n B 1 106 MET 106 278 278 MET MET B . n B 1 107 VAL 107 279 279 VAL VAL B . n B 1 108 SER 108 280 280 SER SER B . n B 1 109 ASN 109 281 281 ASN ASN B . n B 1 110 ALA 110 282 282 ALA ALA B . n B 1 111 PHE 111 283 283 PHE PHE B . n B 1 112 ILE 112 284 284 ILE ILE B . n B 1 113 GLN 113 285 285 GLN GLN B . n B 1 114 SER 114 286 286 SER SER B . n B 1 115 ALA 115 287 287 ALA ALA B . n B 1 116 ASP 116 288 288 ASP ASP B . n B 1 117 GLY 117 289 289 GLY GLY B . n B 1 118 THR 118 290 290 THR THR B . n B 1 119 GLY 119 291 291 GLY GLY B . n B 1 120 TRP 120 292 292 TRP TRP B . n B 1 121 TYR 121 293 293 TYR TYR B . n B 1 122 TYR 122 294 294 TYR TYR B . n B 1 123 LEU 123 295 295 LEU LEU B . n B 1 124 LYS 124 296 296 LYS LYS B . n B 1 125 PRO 125 297 297 PRO PRO B . n B 1 126 ASP 126 298 298 ASP ASP B . n B 1 127 GLY 127 299 299 GLY GLY B . n B 1 128 THR 128 300 300 THR THR B . n B 1 129 LEU 129 301 301 LEU LEU B . n B 1 130 ALA 130 302 302 ALA ALA B . n B 1 131 ASP 131 303 303 ASP ASP B . n B 1 132 LYS 132 304 304 LYS LYS B . n B 1 133 PRO 133 305 305 PRO PRO B . n B 1 134 GLU 134 306 306 GLU GLU B . n B 1 135 PHE 135 307 307 PHE PHE B . n B 1 136 THR 136 308 308 THR THR B . n B 1 137 VAL 137 309 309 VAL VAL B . n B 1 138 GLU 138 310 310 GLU GLU B . n B 1 139 PRO 139 311 311 PRO PRO B . n B 1 140 ASP 140 312 312 ASP ASP B . n B 1 141 GLY 141 313 313 GLY GLY B . n B 1 142 LEU 142 314 314 LEU LEU B . n B 1 143 ILE 143 315 315 ILE ILE B . n B 1 144 THR 144 316 316 THR THR B . n B 1 145 VAL 145 317 317 VAL VAL B . n B 1 146 LYS 146 318 318 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CHT 1 400 400 CHT CHT A . D 2 CHT 1 401 401 CHT CHT A . E 2 CHT 1 402 402 CHT CHT A . F 2 CHT 1 403 403 CHT CHT A . G 2 CHT 1 404 404 CHT CHT A . H 2 CHT 1 400 400 CHT CHT B . I 2 CHT 1 401 401 CHT CHT B . J 2 CHT 1 402 402 CHT CHT B . K 2 CHT 1 403 403 CHT CHT B . L 2 CHT 1 404 404 CHT CHT B . M 3 HOH 1 501 1 HOH HOH A . M 3 HOH 2 502 2 HOH HOH A . M 3 HOH 3 503 3 HOH HOH A . M 3 HOH 4 504 4 HOH HOH A . M 3 HOH 5 505 5 HOH HOH A . M 3 HOH 6 506 6 HOH HOH A . M 3 HOH 7 507 7 HOH HOH A . M 3 HOH 8 508 9 HOH HOH A . M 3 HOH 9 509 10 HOH HOH A . M 3 HOH 10 510 12 HOH HOH A . M 3 HOH 11 511 13 HOH HOH A . M 3 HOH 12 512 15 HOH HOH A . M 3 HOH 13 513 16 HOH HOH A . M 3 HOH 14 514 23 HOH HOH A . M 3 HOH 15 515 25 HOH HOH A . M 3 HOH 16 516 26 HOH HOH A . M 3 HOH 17 517 28 HOH HOH A . M 3 HOH 18 518 34 HOH HOH A . M 3 HOH 19 519 36 HOH HOH A . M 3 HOH 20 520 40 HOH HOH A . N 3 HOH 1 501 8 HOH HOH B . N 3 HOH 2 502 11 HOH HOH B . N 3 HOH 3 503 14 HOH HOH B . N 3 HOH 4 504 17 HOH HOH B . N 3 HOH 5 505 18 HOH HOH B . N 3 HOH 6 506 19 HOH HOH B . N 3 HOH 7 507 21 HOH HOH B . N 3 HOH 8 508 22 HOH HOH B . N 3 HOH 9 509 24 HOH HOH B . N 3 HOH 10 510 27 HOH HOH B . N 3 HOH 11 511 32 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1850 ? 1 MORE -14 ? 1 'SSA (A^2)' 17430 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-29 2 'Structure model' 1 1 2014-03-19 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A SER 190 ? ? CA A SER 190 ? ? C A SER 190 ? ? 121.89 110.10 11.79 1.90 N 2 1 N A GLY 192 ? ? CA A GLY 192 ? ? C A GLY 192 ? ? 89.51 113.10 -23.59 2.50 N 3 1 CB B SER 190 ? ? CA B SER 190 ? ? C B SER 190 ? ? 121.77 110.10 11.67 1.90 N 4 1 N B GLY 192 ? ? CA B GLY 192 ? ? C B GLY 192 ? ? 92.35 113.10 -20.75 2.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 174 ? ? -138.11 -54.49 2 1 THR A 176 ? ? -154.16 80.59 3 1 ASN A 181 ? ? -106.88 64.67 4 1 ASP A 191 ? ? -167.42 77.75 5 1 SER A 193 ? ? -140.32 -76.06 6 1 ASP A 252 ? ? -58.90 170.56 7 1 LYS A 265 ? ? 59.07 -121.63 8 1 LYS A 274 ? ? -98.30 -61.04 9 1 ALA B 174 ? ? -136.19 -52.68 10 1 THR B 176 ? ? -153.48 74.85 11 1 ASN B 181 ? ? -109.67 70.84 12 1 ASP B 191 ? ? -164.86 67.32 13 1 SER B 193 ? ? -141.31 -72.62 14 1 LYS B 265 ? ? 57.69 -121.84 15 1 LYS B 274 ? ? -97.72 -61.06 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ASP A 191 ? ? GLY A 192 ? ? 128.27 2 1 ASP B 191 ? ? GLY B 192 ? ? 136.74 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CHT C4 C N N 74 CHT C5 C N N 75 CHT C6 C N N 76 CHT C7 C N N 77 CHT C8 C N N 78 CHT O6 O N N 79 CHT N1 N N N 80 CHT HC41 H N N 81 CHT HC42 H N N 82 CHT HC51 H N N 83 CHT HC52 H N N 84 CHT H61 H N N 85 CHT H62 H N N 86 CHT H63 H N N 87 CHT H71 H N N 88 CHT H72 H N N 89 CHT H73 H N N 90 CHT H81 H N N 91 CHT H82 H N N 92 CHT H83 H N N 93 CHT HO6 H N N 94 GLN N N N N 95 GLN CA C N S 96 GLN C C N N 97 GLN O O N N 98 GLN CB C N N 99 GLN CG C N N 100 GLN CD C N N 101 GLN OE1 O N N 102 GLN NE2 N N N 103 GLN OXT O N N 104 GLN H H N N 105 GLN H2 H N N 106 GLN HA H N N 107 GLN HB2 H N N 108 GLN HB3 H N N 109 GLN HG2 H N N 110 GLN HG3 H N N 111 GLN HE21 H N N 112 GLN HE22 H N N 113 GLN HXT H N N 114 GLU N N N N 115 GLU CA C N S 116 GLU C C N N 117 GLU O O N N 118 GLU CB C N N 119 GLU CG C N N 120 GLU CD C N N 121 GLU OE1 O N N 122 GLU OE2 O N N 123 GLU OXT O N N 124 GLU H H N N 125 GLU H2 H N N 126 GLU HA H N N 127 GLU HB2 H N N 128 GLU HB3 H N N 129 GLU HG2 H N N 130 GLU HG3 H N N 131 GLU HE2 H N N 132 GLU HXT H N N 133 GLY N N N N 134 GLY CA C N N 135 GLY C C N N 136 GLY O O N N 137 GLY OXT O N N 138 GLY H H N N 139 GLY H2 H N N 140 GLY HA2 H N N 141 GLY HA3 H N N 142 GLY HXT H N N 143 HIS N N N N 144 HIS CA C N S 145 HIS C C N N 146 HIS O O N N 147 HIS CB C N N 148 HIS CG C Y N 149 HIS ND1 N Y N 150 HIS CD2 C Y N 151 HIS CE1 C Y N 152 HIS NE2 N Y N 153 HIS OXT O N N 154 HIS H H N N 155 HIS H2 H N N 156 HIS HA H N N 157 HIS HB2 H N N 158 HIS HB3 H N N 159 HIS HD1 H N N 160 HIS HD2 H N N 161 HIS HE1 H N N 162 HIS HE2 H N N 163 HIS HXT H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 ILE N N N N 168 ILE CA C N S 169 ILE C C N N 170 ILE O O N N 171 ILE CB C N S 172 ILE CG1 C N N 173 ILE CG2 C N N 174 ILE CD1 C N N 175 ILE OXT O N N 176 ILE H H N N 177 ILE H2 H N N 178 ILE HA H N N 179 ILE HB H N N 180 ILE HG12 H N N 181 ILE HG13 H N N 182 ILE HG21 H N N 183 ILE HG22 H N N 184 ILE HG23 H N N 185 ILE HD11 H N N 186 ILE HD12 H N N 187 ILE HD13 H N N 188 ILE HXT H N N 189 LEU N N N N 190 LEU CA C N S 191 LEU C C N N 192 LEU O O N N 193 LEU CB C N N 194 LEU CG C N N 195 LEU CD1 C N N 196 LEU CD2 C N N 197 LEU OXT O N N 198 LEU H H N N 199 LEU H2 H N N 200 LEU HA H N N 201 LEU HB2 H N N 202 LEU HB3 H N N 203 LEU HG H N N 204 LEU HD11 H N N 205 LEU HD12 H N N 206 LEU HD13 H N N 207 LEU HD21 H N N 208 LEU HD22 H N N 209 LEU HD23 H N N 210 LEU HXT H N N 211 LYS N N N N 212 LYS CA C N S 213 LYS C C N N 214 LYS O O N N 215 LYS CB C N N 216 LYS CG C N N 217 LYS CD C N N 218 LYS CE C N N 219 LYS NZ N N N 220 LYS OXT O N N 221 LYS H H N N 222 LYS H2 H N N 223 LYS HA H N N 224 LYS HB2 H N N 225 LYS HB3 H N N 226 LYS HG2 H N N 227 LYS HG3 H N N 228 LYS HD2 H N N 229 LYS HD3 H N N 230 LYS HE2 H N N 231 LYS HE3 H N N 232 LYS HZ1 H N N 233 LYS HZ2 H N N 234 LYS HZ3 H N N 235 LYS HXT H N N 236 MET N N N N 237 MET CA C N S 238 MET C C N N 239 MET O O N N 240 MET CB C N N 241 MET CG C N N 242 MET SD S N N 243 MET CE C N N 244 MET OXT O N N 245 MET H H N N 246 MET H2 H N N 247 MET HA H N N 248 MET HB2 H N N 249 MET HB3 H N N 250 MET HG2 H N N 251 MET HG3 H N N 252 MET HE1 H N N 253 MET HE2 H N N 254 MET HE3 H N N 255 MET HXT H N N 256 PHE N N N N 257 PHE CA C N S 258 PHE C C N N 259 PHE O O N N 260 PHE CB C N N 261 PHE CG C Y N 262 PHE CD1 C Y N 263 PHE CD2 C Y N 264 PHE CE1 C Y N 265 PHE CE2 C Y N 266 PHE CZ C Y N 267 PHE OXT O N N 268 PHE H H N N 269 PHE H2 H N N 270 PHE HA H N N 271 PHE HB2 H N N 272 PHE HB3 H N N 273 PHE HD1 H N N 274 PHE HD2 H N N 275 PHE HE1 H N N 276 PHE HE2 H N N 277 PHE HZ H N N 278 PHE HXT H N N 279 PRO N N N N 280 PRO CA C N S 281 PRO C C N N 282 PRO O O N N 283 PRO CB C N N 284 PRO CG C N N 285 PRO CD C N N 286 PRO OXT O N N 287 PRO H H N N 288 PRO HA H N N 289 PRO HB2 H N N 290 PRO HB3 H N N 291 PRO HG2 H N N 292 PRO HG3 H N N 293 PRO HD2 H N N 294 PRO HD3 H N N 295 PRO HXT H N N 296 SER N N N N 297 SER CA C N S 298 SER C C N N 299 SER O O N N 300 SER CB C N N 301 SER OG O N N 302 SER OXT O N N 303 SER H H N N 304 SER H2 H N N 305 SER HA H N N 306 SER HB2 H N N 307 SER HB3 H N N 308 SER HG H N N 309 SER HXT H N N 310 THR N N N N 311 THR CA C N S 312 THR C C N N 313 THR O O N N 314 THR CB C N R 315 THR OG1 O N N 316 THR CG2 C N N 317 THR OXT O N N 318 THR H H N N 319 THR H2 H N N 320 THR HA H N N 321 THR HB H N N 322 THR HG1 H N N 323 THR HG21 H N N 324 THR HG22 H N N 325 THR HG23 H N N 326 THR HXT H N N 327 TRP N N N N 328 TRP CA C N S 329 TRP C C N N 330 TRP O O N N 331 TRP CB C N N 332 TRP CG C Y N 333 TRP CD1 C Y N 334 TRP CD2 C Y N 335 TRP NE1 N Y N 336 TRP CE2 C Y N 337 TRP CE3 C Y N 338 TRP CZ2 C Y N 339 TRP CZ3 C Y N 340 TRP CH2 C Y N 341 TRP OXT O N N 342 TRP H H N N 343 TRP H2 H N N 344 TRP HA H N N 345 TRP HB2 H N N 346 TRP HB3 H N N 347 TRP HD1 H N N 348 TRP HE1 H N N 349 TRP HE3 H N N 350 TRP HZ2 H N N 351 TRP HZ3 H N N 352 TRP HH2 H N N 353 TRP HXT H N N 354 TYR N N N N 355 TYR CA C N S 356 TYR C C N N 357 TYR O O N N 358 TYR CB C N N 359 TYR CG C Y N 360 TYR CD1 C Y N 361 TYR CD2 C Y N 362 TYR CE1 C Y N 363 TYR CE2 C Y N 364 TYR CZ C Y N 365 TYR OH O N N 366 TYR OXT O N N 367 TYR H H N N 368 TYR H2 H N N 369 TYR HA H N N 370 TYR HB2 H N N 371 TYR HB3 H N N 372 TYR HD1 H N N 373 TYR HD2 H N N 374 TYR HE1 H N N 375 TYR HE2 H N N 376 TYR HH H N N 377 TYR HXT H N N 378 VAL N N N N 379 VAL CA C N S 380 VAL C C N N 381 VAL O O N N 382 VAL CB C N N 383 VAL CG1 C N N 384 VAL CG2 C N N 385 VAL OXT O N N 386 VAL H H N N 387 VAL H2 H N N 388 VAL HA H N N 389 VAL HB H N N 390 VAL HG11 H N N 391 VAL HG12 H N N 392 VAL HG13 H N N 393 VAL HG21 H N N 394 VAL HG22 H N N 395 VAL HG23 H N N 396 VAL HXT H N N 397 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CHT C4 C5 sing N N 70 CHT C4 O6 sing N N 71 CHT C4 HC41 sing N N 72 CHT C4 HC42 sing N N 73 CHT C5 N1 sing N N 74 CHT C5 HC51 sing N N 75 CHT C5 HC52 sing N N 76 CHT C6 N1 sing N N 77 CHT C6 H61 sing N N 78 CHT C6 H62 sing N N 79 CHT C6 H63 sing N N 80 CHT C7 N1 sing N N 81 CHT C7 H71 sing N N 82 CHT C7 H72 sing N N 83 CHT C7 H73 sing N N 84 CHT C8 N1 sing N N 85 CHT C8 H81 sing N N 86 CHT C8 H82 sing N N 87 CHT C8 H83 sing N N 88 CHT O6 HO6 sing N N 89 GLN N CA sing N N 90 GLN N H sing N N 91 GLN N H2 sing N N 92 GLN CA C sing N N 93 GLN CA CB sing N N 94 GLN CA HA sing N N 95 GLN C O doub N N 96 GLN C OXT sing N N 97 GLN CB CG sing N N 98 GLN CB HB2 sing N N 99 GLN CB HB3 sing N N 100 GLN CG CD sing N N 101 GLN CG HG2 sing N N 102 GLN CG HG3 sing N N 103 GLN CD OE1 doub N N 104 GLN CD NE2 sing N N 105 GLN NE2 HE21 sing N N 106 GLN NE2 HE22 sing N N 107 GLN OXT HXT sing N N 108 GLU N CA sing N N 109 GLU N H sing N N 110 GLU N H2 sing N N 111 GLU CA C sing N N 112 GLU CA CB sing N N 113 GLU CA HA sing N N 114 GLU C O doub N N 115 GLU C OXT sing N N 116 GLU CB CG sing N N 117 GLU CB HB2 sing N N 118 GLU CB HB3 sing N N 119 GLU CG CD sing N N 120 GLU CG HG2 sing N N 121 GLU CG HG3 sing N N 122 GLU CD OE1 doub N N 123 GLU CD OE2 sing N N 124 GLU OE2 HE2 sing N N 125 GLU OXT HXT sing N N 126 GLY N CA sing N N 127 GLY N H sing N N 128 GLY N H2 sing N N 129 GLY CA C sing N N 130 GLY CA HA2 sing N N 131 GLY CA HA3 sing N N 132 GLY C O doub N N 133 GLY C OXT sing N N 134 GLY OXT HXT sing N N 135 HIS N CA sing N N 136 HIS N H sing N N 137 HIS N H2 sing N N 138 HIS CA C sing N N 139 HIS CA CB sing N N 140 HIS CA HA sing N N 141 HIS C O doub N N 142 HIS C OXT sing N N 143 HIS CB CG sing N N 144 HIS CB HB2 sing N N 145 HIS CB HB3 sing N N 146 HIS CG ND1 sing Y N 147 HIS CG CD2 doub Y N 148 HIS ND1 CE1 doub Y N 149 HIS ND1 HD1 sing N N 150 HIS CD2 NE2 sing Y N 151 HIS CD2 HD2 sing N N 152 HIS CE1 NE2 sing Y N 153 HIS CE1 HE1 sing N N 154 HIS NE2 HE2 sing N N 155 HIS OXT HXT sing N N 156 HOH O H1 sing N N 157 HOH O H2 sing N N 158 ILE N CA sing N N 159 ILE N H sing N N 160 ILE N H2 sing N N 161 ILE CA C sing N N 162 ILE CA CB sing N N 163 ILE CA HA sing N N 164 ILE C O doub N N 165 ILE C OXT sing N N 166 ILE CB CG1 sing N N 167 ILE CB CG2 sing N N 168 ILE CB HB sing N N 169 ILE CG1 CD1 sing N N 170 ILE CG1 HG12 sing N N 171 ILE CG1 HG13 sing N N 172 ILE CG2 HG21 sing N N 173 ILE CG2 HG22 sing N N 174 ILE CG2 HG23 sing N N 175 ILE CD1 HD11 sing N N 176 ILE CD1 HD12 sing N N 177 ILE CD1 HD13 sing N N 178 ILE OXT HXT sing N N 179 LEU N CA sing N N 180 LEU N H sing N N 181 LEU N H2 sing N N 182 LEU CA C sing N N 183 LEU CA CB sing N N 184 LEU CA HA sing N N 185 LEU C O doub N N 186 LEU C OXT sing N N 187 LEU CB CG sing N N 188 LEU CB HB2 sing N N 189 LEU CB HB3 sing N N 190 LEU CG CD1 sing N N 191 LEU CG CD2 sing N N 192 LEU CG HG sing N N 193 LEU CD1 HD11 sing N N 194 LEU CD1 HD12 sing N N 195 LEU CD1 HD13 sing N N 196 LEU CD2 HD21 sing N N 197 LEU CD2 HD22 sing N N 198 LEU CD2 HD23 sing N N 199 LEU OXT HXT sing N N 200 LYS N CA sing N N 201 LYS N H sing N N 202 LYS N H2 sing N N 203 LYS CA C sing N N 204 LYS CA CB sing N N 205 LYS CA HA sing N N 206 LYS C O doub N N 207 LYS C OXT sing N N 208 LYS CB CG sing N N 209 LYS CB HB2 sing N N 210 LYS CB HB3 sing N N 211 LYS CG CD sing N N 212 LYS CG HG2 sing N N 213 LYS CG HG3 sing N N 214 LYS CD CE sing N N 215 LYS CD HD2 sing N N 216 LYS CD HD3 sing N N 217 LYS CE NZ sing N N 218 LYS CE HE2 sing N N 219 LYS CE HE3 sing N N 220 LYS NZ HZ1 sing N N 221 LYS NZ HZ2 sing N N 222 LYS NZ HZ3 sing N N 223 LYS OXT HXT sing N N 224 MET N CA sing N N 225 MET N H sing N N 226 MET N H2 sing N N 227 MET CA C sing N N 228 MET CA CB sing N N 229 MET CA HA sing N N 230 MET C O doub N N 231 MET C OXT sing N N 232 MET CB CG sing N N 233 MET CB HB2 sing N N 234 MET CB HB3 sing N N 235 MET CG SD sing N N 236 MET CG HG2 sing N N 237 MET CG HG3 sing N N 238 MET SD CE sing N N 239 MET CE HE1 sing N N 240 MET CE HE2 sing N N 241 MET CE HE3 sing N N 242 MET OXT HXT sing N N 243 PHE N CA sing N N 244 PHE N H sing N N 245 PHE N H2 sing N N 246 PHE CA C sing N N 247 PHE CA CB sing N N 248 PHE CA HA sing N N 249 PHE C O doub N N 250 PHE C OXT sing N N 251 PHE CB CG sing N N 252 PHE CB HB2 sing N N 253 PHE CB HB3 sing N N 254 PHE CG CD1 doub Y N 255 PHE CG CD2 sing Y N 256 PHE CD1 CE1 sing Y N 257 PHE CD1 HD1 sing N N 258 PHE CD2 CE2 doub Y N 259 PHE CD2 HD2 sing N N 260 PHE CE1 CZ doub Y N 261 PHE CE1 HE1 sing N N 262 PHE CE2 CZ sing Y N 263 PHE CE2 HE2 sing N N 264 PHE CZ HZ sing N N 265 PHE OXT HXT sing N N 266 PRO N CA sing N N 267 PRO N CD sing N N 268 PRO N H sing N N 269 PRO CA C sing N N 270 PRO CA CB sing N N 271 PRO CA HA sing N N 272 PRO C O doub N N 273 PRO C OXT sing N N 274 PRO CB CG sing N N 275 PRO CB HB2 sing N N 276 PRO CB HB3 sing N N 277 PRO CG CD sing N N 278 PRO CG HG2 sing N N 279 PRO CG HG3 sing N N 280 PRO CD HD2 sing N N 281 PRO CD HD3 sing N N 282 PRO OXT HXT sing N N 283 SER N CA sing N N 284 SER N H sing N N 285 SER N H2 sing N N 286 SER CA C sing N N 287 SER CA CB sing N N 288 SER CA HA sing N N 289 SER C O doub N N 290 SER C OXT sing N N 291 SER CB OG sing N N 292 SER CB HB2 sing N N 293 SER CB HB3 sing N N 294 SER OG HG sing N N 295 SER OXT HXT sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 TRP N CA sing N N 313 TRP N H sing N N 314 TRP N H2 sing N N 315 TRP CA C sing N N 316 TRP CA CB sing N N 317 TRP CA HA sing N N 318 TRP C O doub N N 319 TRP C OXT sing N N 320 TRP CB CG sing N N 321 TRP CB HB2 sing N N 322 TRP CB HB3 sing N N 323 TRP CG CD1 doub Y N 324 TRP CG CD2 sing Y N 325 TRP CD1 NE1 sing Y N 326 TRP CD1 HD1 sing N N 327 TRP CD2 CE2 doub Y N 328 TRP CD2 CE3 sing Y N 329 TRP NE1 CE2 sing Y N 330 TRP NE1 HE1 sing N N 331 TRP CE2 CZ2 sing Y N 332 TRP CE3 CZ3 doub Y N 333 TRP CE3 HE3 sing N N 334 TRP CZ2 CH2 doub Y N 335 TRP CZ2 HZ2 sing N N 336 TRP CZ3 CH2 sing Y N 337 TRP CZ3 HZ3 sing N N 338 TRP CH2 HH2 sing N N 339 TRP OXT HXT sing N N 340 TYR N CA sing N N 341 TYR N H sing N N 342 TYR N H2 sing N N 343 TYR CA C sing N N 344 TYR CA CB sing N N 345 TYR CA HA sing N N 346 TYR C O doub N N 347 TYR C OXT sing N N 348 TYR CB CG sing N N 349 TYR CB HB2 sing N N 350 TYR CB HB3 sing N N 351 TYR CG CD1 doub Y N 352 TYR CG CD2 sing Y N 353 TYR CD1 CE1 sing Y N 354 TYR CD1 HD1 sing N N 355 TYR CD2 CE2 doub Y N 356 TYR CD2 HD2 sing N N 357 TYR CE1 CZ doub Y N 358 TYR CE1 HE1 sing N N 359 TYR CE2 CZ sing Y N 360 TYR CE2 HE2 sing N N 361 TYR CZ OH sing N N 362 TYR OH HH sing N N 363 TYR OXT HXT sing N N 364 VAL N CA sing N N 365 VAL N H sing N N 366 VAL N H2 sing N N 367 VAL CA C sing N N 368 VAL CA CB sing N N 369 VAL CA HA sing N N 370 VAL C O doub N N 371 VAL C OXT sing N N 372 VAL CB CG1 sing N N 373 VAL CB CG2 sing N N 374 VAL CB HB sing N N 375 VAL CG1 HG11 sing N N 376 VAL CG1 HG12 sing N N 377 VAL CG1 HG13 sing N N 378 VAL CG2 HG21 sing N N 379 VAL CG2 HG22 sing N N 380 VAL CG2 HG23 sing N N 381 VAL OXT HXT sing N N 382 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHOLINE ION' CHT 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GVN _pdbx_initial_refinement_model.details 'PDB ENTRY 1GVN' #