HEADER OXIDOREDUCTASE 29-JAN-13 4IZH TITLE CRYSTAL STRUCTURE OF THE ALPHA1 DIMER OF THERMUS THERMOPHILUS TITLE 2 TRANSHYDROGENASE IN P6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD/NADP TRANSHYDROGENASE ALPHA SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.6.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ACRAB-; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ALPHA1 SUBUNIT, NAD BINDING, DOMAIN III OF BETA SUBUNIT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.STOUT,M.YAMAGUCHI,J.LEUNG REVDAT 2 20-SEP-23 4IZH 1 REMARK SEQADV REVDAT 1 29-JAN-14 4IZH 0 JRNL AUTH J.LEUNG,M.YAMAGUCHI,L.A.SCHURIG BRICCIO,R.B GENNIS,C.D.STOUT JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF THERMUS THERMOPHILUS JRNL TITL 2 TRANSHYDROGENASE SOLUBLE DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 140.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 97733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5210 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 381 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.018 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.017 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.706 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5659 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7662 ; 1.525 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 5.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;37.386 ;23.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 980 ;19.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;17.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 901 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4143 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3634 ; 0.941 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5839 ; 1.660 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2025 ; 2.715 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1816 ; 4.630 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000077404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, SI(111); REMARK 200 ASYMMETRIC CUT 4.965 DEGS. REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 140.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MEMSTART MEMSYS KIT, CONDITION E2: REMARK 280 0.1M SODIUM CHLORIDE, 0.1M NA CITRATE PH 3.5, 0.1M LITHIUM REMARK 280 SULPHATE, 30% V/V PEG 400, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER OF ALPHA1 SUBUNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 221 REMARK 465 GLY A 222 REMARK 465 GLU A 223 REMARK 465 GLY A 224 REMARK 465 GLY A 225 REMARK 465 TYR A 226 REMARK 465 ALA A 227 REMARK 465 ARG A 228 REMARK 465 ALA A 370 REMARK 465 LEU A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 GLY A 374 REMARK 465 ALA A 375 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ALA B 220 REMARK 465 GLU B 221 REMARK 465 GLY B 222 REMARK 465 GLU B 223 REMARK 465 GLY B 224 REMARK 465 GLY B 225 REMARK 465 TYR B 226 REMARK 465 ALA B 227 REMARK 465 ARG B 228 REMARK 465 GLY B 374 REMARK 465 ALA B 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 204 O2 GOL B 404 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 74 -70.09 -95.44 REMARK 500 GLN A 96 73.33 36.21 REMARK 500 ASN A 100 39.05 -141.11 REMARK 500 VAL A 175 62.16 -108.17 REMARK 500 GLU A 232 25.30 -79.49 REMARK 500 ALA A 344 64.73 -151.84 REMARK 500 VAL B 74 -74.71 -92.77 REMARK 500 GLN B 96 76.29 37.96 REMARK 500 VAL B 175 56.50 -115.76 REMARK 500 ARG B 261 154.94 179.09 REMARK 500 LEU B 318 55.97 -94.06 REMARK 500 ALA B 344 68.72 -150.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L7D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF TRANSHYDROGENASE DOMAIN I WITH AND WITHOUT REMARK 900 BOUND NADH REMARK 900 RELATED ID: 1L7E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF TRANSHYDROGENASE DOMAIN I WITH AND WITHOUT REMARK 900 BOUND NADH REMARK 900 RELATED ID: 4IZI RELATED DB: PDB DBREF 4IZH A 1 375 UNP Q72GR8 Q72GR8_THET2 1 375 DBREF 4IZH B 1 375 UNP Q72GR8 Q72GR8_THET2 1 375 SEQADV 4IZH HIS A -5 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS A -4 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS A -3 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS A -2 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS A -1 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS A 0 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS B -5 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS B -4 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS B -3 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS B -2 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS B -1 UNP Q72GR8 EXPRESSION TAG SEQADV 4IZH HIS B 0 UNP Q72GR8 EXPRESSION TAG SEQRES 1 A 381 HIS HIS HIS HIS HIS HIS MET VAL THR VAL ALA VAL PRO SEQRES 2 A 381 LYS GLU ARG ALA PRO GLY GLU ARG ARG VAL ALA LEU VAL SEQRES 3 A 381 PRO GLU VAL VAL ALA ARG LEU VAL LYS GLY GLY ALA ARG SEQRES 4 A 381 VAL ARG VAL GLU ARG GLY ALA GLY GLU GLY ALA TYR HIS SEQRES 5 A 381 PRO ASP GLU ALA TYR GLN GLU ALA GLY ALA GLU VAL VAL SEQRES 6 A 381 GLU ARG GLY GLU LEU LEU LYS GLY ALA HIS LEU LEU PHE SEQRES 7 A 381 THR VAL GLN PRO PRO PRO GLU ASP LEU ILE GLN ALA LEU SEQRES 8 A 381 GLU PRO GLY ALA ILE VAL VAL GLY PHE VAL GLN PRO HIS SEQRES 9 A 381 LYS ASN LEU GLU LEU VAL ARG ALA LEU GLN ALA LYS LYS SEQRES 10 A 381 ALA THR VAL ILE ALA MET GLU LEU ILE PRO ARG ILE THR SEQRES 11 A 381 ARG ALA GLN SER MET ASP ALA LEU SER SER GLN ALA THR SEQRES 12 A 381 VAL ALA GLY TYR LEU ALA ALA ILE HIS ALA ALA ARG LEU SEQRES 13 A 381 SER PRO ARG PHE PHE PRO MET LEU THR THR ALA ALA GLY SEQRES 14 A 381 THR ILE ARG PRO ALA LYS VAL MET VAL MET GLY VAL GLY SEQRES 15 A 381 VAL ALA GLY LEU MET ALA ILE ALA THR ALA LYS ARG LEU SEQRES 16 A 381 GLY ALA GLN VAL PHE ALA TYR ASP VAL ARG LYS ALA ALA SEQRES 17 A 381 LEU GLU GLN ALA LEU SER LEU GLY ALA LYS PRO ILE GLU SEQRES 18 A 381 LEU PRO ILE SER ALA GLU GLY GLU GLY GLY TYR ALA ARG SEQRES 19 A 381 GLU LEU THR GLU GLU GLU LYS ARG ILE GLN HIS GLU ALA SEQRES 20 A 381 LEU ARG ASP HIS VAL ALA GLY MET ASP VAL LEU ILE THR SEQRES 21 A 381 THR ALA GLN VAL PRO GLY ARG ARG ALA PRO ILE LEU LEU SEQRES 22 A 381 THR GLU ASP MET VAL GLU ARG LEU LYS PRO GLY THR VAL SEQRES 23 A 381 VAL VAL ASP LEU ALA ALA GLU SER GLY GLY ASN CYS VAL SEQRES 24 A 381 LEU THR LYS PRO GLY GLU VAL VAL GLU VAL ARG GLY VAL SEQRES 25 A 381 ARG VAL TYR GLY PRO LEU ASN LEU PRO SER GLU LEU SER SEQRES 26 A 381 VAL HIS ALA SER GLU MET TYR ALA LYS ASN LEU TYR ASN SEQRES 27 A 381 LEU SER SER LEU LEU ILE GLU LYS GLY ALA PHE ALA PRO SEQRES 28 A 381 LYS TRP GLU ASP GLU ILE VAL ARG ALA ALA LEU LEU MET SEQRES 29 A 381 LYS GLU GLY GLU VAL LEU HIS GLY PRO THR LYS ALA LEU SEQRES 30 A 381 LEU GLY GLY ALA SEQRES 1 B 381 HIS HIS HIS HIS HIS HIS MET VAL THR VAL ALA VAL PRO SEQRES 2 B 381 LYS GLU ARG ALA PRO GLY GLU ARG ARG VAL ALA LEU VAL SEQRES 3 B 381 PRO GLU VAL VAL ALA ARG LEU VAL LYS GLY GLY ALA ARG SEQRES 4 B 381 VAL ARG VAL GLU ARG GLY ALA GLY GLU GLY ALA TYR HIS SEQRES 5 B 381 PRO ASP GLU ALA TYR GLN GLU ALA GLY ALA GLU VAL VAL SEQRES 6 B 381 GLU ARG GLY GLU LEU LEU LYS GLY ALA HIS LEU LEU PHE SEQRES 7 B 381 THR VAL GLN PRO PRO PRO GLU ASP LEU ILE GLN ALA LEU SEQRES 8 B 381 GLU PRO GLY ALA ILE VAL VAL GLY PHE VAL GLN PRO HIS SEQRES 9 B 381 LYS ASN LEU GLU LEU VAL ARG ALA LEU GLN ALA LYS LYS SEQRES 10 B 381 ALA THR VAL ILE ALA MET GLU LEU ILE PRO ARG ILE THR SEQRES 11 B 381 ARG ALA GLN SER MET ASP ALA LEU SER SER GLN ALA THR SEQRES 12 B 381 VAL ALA GLY TYR LEU ALA ALA ILE HIS ALA ALA ARG LEU SEQRES 13 B 381 SER PRO ARG PHE PHE PRO MET LEU THR THR ALA ALA GLY SEQRES 14 B 381 THR ILE ARG PRO ALA LYS VAL MET VAL MET GLY VAL GLY SEQRES 15 B 381 VAL ALA GLY LEU MET ALA ILE ALA THR ALA LYS ARG LEU SEQRES 16 B 381 GLY ALA GLN VAL PHE ALA TYR ASP VAL ARG LYS ALA ALA SEQRES 17 B 381 LEU GLU GLN ALA LEU SER LEU GLY ALA LYS PRO ILE GLU SEQRES 18 B 381 LEU PRO ILE SER ALA GLU GLY GLU GLY GLY TYR ALA ARG SEQRES 19 B 381 GLU LEU THR GLU GLU GLU LYS ARG ILE GLN HIS GLU ALA SEQRES 20 B 381 LEU ARG ASP HIS VAL ALA GLY MET ASP VAL LEU ILE THR SEQRES 21 B 381 THR ALA GLN VAL PRO GLY ARG ARG ALA PRO ILE LEU LEU SEQRES 22 B 381 THR GLU ASP MET VAL GLU ARG LEU LYS PRO GLY THR VAL SEQRES 23 B 381 VAL VAL ASP LEU ALA ALA GLU SER GLY GLY ASN CYS VAL SEQRES 24 B 381 LEU THR LYS PRO GLY GLU VAL VAL GLU VAL ARG GLY VAL SEQRES 25 B 381 ARG VAL TYR GLY PRO LEU ASN LEU PRO SER GLU LEU SER SEQRES 26 B 381 VAL HIS ALA SER GLU MET TYR ALA LYS ASN LEU TYR ASN SEQRES 27 B 381 LEU SER SER LEU LEU ILE GLU LYS GLY ALA PHE ALA PRO SEQRES 28 B 381 LYS TRP GLU ASP GLU ILE VAL ARG ALA ALA LEU LEU MET SEQRES 29 B 381 LYS GLU GLY GLU VAL LEU HIS GLY PRO THR LYS ALA LEU SEQRES 30 B 381 LEU GLY GLY ALA HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 13(C3 H8 O3) FORMUL 16 HOH *193(H2 O) HELIX 1 1 VAL A 20 GLY A 31 1 12 HELIX 2 2 GLY A 41 TYR A 45 5 5 HELIX 3 3 PRO A 47 GLY A 55 1 9 HELIX 4 4 PRO A 78 GLN A 83 1 6 HELIX 5 5 GLN A 96 LYS A 111 1 16 HELIX 6 6 GLU A 118 ILE A 120 5 3 HELIX 7 7 ILE A 123 MET A 129 5 7 HELIX 8 8 ASP A 130 SER A 151 1 22 HELIX 9 9 GLY A 176 LEU A 189 1 14 HELIX 10 10 ARG A 199 LEU A 209 1 11 HELIX 11 11 GLU A 233 GLY A 248 1 16 HELIX 12 12 THR A 268 GLU A 273 1 6 HELIX 13 13 ALA A 285 GLY A 289 5 5 HELIX 14 14 ASN A 313 LEU A 318 1 6 HELIX 15 15 LEU A 318 SER A 334 1 17 HELIX 16 16 ASP A 349 ALA A 355 1 7 HELIX 17 17 VAL B 20 GLY B 30 1 11 HELIX 18 18 GLY B 41 TYR B 45 5 5 HELIX 19 19 PRO B 47 ALA B 54 1 8 HELIX 20 20 GLU B 60 LEU B 64 5 5 HELIX 21 21 PRO B 78 GLN B 83 1 6 HELIX 22 22 ASN B 100 LYS B 110 1 11 HELIX 23 23 GLU B 118 ILE B 120 5 3 HELIX 24 24 ILE B 123 MET B 129 5 7 HELIX 25 25 ASP B 130 SER B 151 1 22 HELIX 26 26 GLY B 176 LEU B 189 1 14 HELIX 27 27 ARG B 199 LEU B 209 1 11 HELIX 28 28 THR B 231 GLY B 248 1 18 HELIX 29 29 THR B 268 GLU B 273 1 6 HELIX 30 30 ALA B 285 GLY B 289 5 5 HELIX 31 31 ASN B 313 LEU B 318 1 6 HELIX 32 32 LEU B 318 SER B 335 1 18 HELIX 33 33 ASP B 349 ALA B 355 1 7 HELIX 34 34 HIS B 365 GLY B 373 1 9 SHEET 1 A 8 GLU A 57 VAL A 59 0 SHEET 2 A 8 ARG A 33 GLU A 37 1 N VAL A 36 O GLU A 57 SHEET 3 A 8 THR A 3 VAL A 6 1 N VAL A 4 O ARG A 35 SHEET 4 A 8 LEU A 70 PHE A 72 1 O PHE A 72 N ALA A 5 SHEET 5 A 8 ILE A 90 GLY A 93 1 O VAL A 92 N LEU A 71 SHEET 6 A 8 THR A 113 ALA A 116 1 O ILE A 115 N VAL A 91 SHEET 7 A 8 LEU A 356 LYS A 359 -1 O LEU A 357 N VAL A 114 SHEET 8 A 8 GLU A 362 VAL A 363 -1 O GLU A 362 N LYS A 359 SHEET 1 B 2 LEU A 158 THR A 160 0 SHEET 2 B 2 GLY A 163 ILE A 165 -1 O ILE A 165 N LEU A 158 SHEET 1 C 7 LYS A 212 PRO A 213 0 SHEET 2 C 7 GLN A 192 TYR A 196 1 N VAL A 193 O LYS A 212 SHEET 3 C 7 LYS A 169 MET A 173 1 N VAL A 170 O PHE A 194 SHEET 4 C 7 VAL A 251 THR A 254 1 O ILE A 253 N MET A 173 SHEET 5 C 7 VAL A 280 ASP A 283 1 O VAL A 282 N LEU A 252 SHEET 6 C 7 VAL A 306 TYR A 309 1 O TYR A 309 N ASP A 283 SHEET 7 C 7 VAL A 300 VAL A 303 -1 N VAL A 301 O VAL A 308 SHEET 1 D 2 ILE A 338 GLU A 339 0 SHEET 2 D 2 ALA A 342 PHE A 343 -1 O ALA A 342 N GLU A 339 SHEET 1 E 8 GLU B 57 VAL B 59 0 SHEET 2 E 8 ARG B 33 GLU B 37 1 N VAL B 36 O GLU B 57 SHEET 3 E 8 THR B 3 VAL B 6 1 N VAL B 4 O ARG B 35 SHEET 4 E 8 LEU B 70 PHE B 72 1 O PHE B 72 N ALA B 5 SHEET 5 E 8 ILE B 90 GLY B 93 1 O VAL B 92 N LEU B 71 SHEET 6 E 8 THR B 113 ALA B 116 1 O THR B 113 N VAL B 91 SHEET 7 E 8 LEU B 356 LYS B 359 -1 O LEU B 357 N VAL B 114 SHEET 8 E 8 GLU B 362 VAL B 363 -1 O GLU B 362 N LYS B 359 SHEET 1 F 2 LEU B 158 THR B 160 0 SHEET 2 F 2 GLY B 163 ILE B 165 -1 O ILE B 165 N LEU B 158 SHEET 1 G 7 LYS B 212 PRO B 213 0 SHEET 2 G 7 GLN B 192 TYR B 196 1 N VAL B 193 O LYS B 212 SHEET 3 G 7 LYS B 169 MET B 173 1 N VAL B 170 O PHE B 194 SHEET 4 G 7 VAL B 251 THR B 254 1 O ILE B 253 N MET B 173 SHEET 5 G 7 VAL B 280 ASP B 283 1 O VAL B 282 N LEU B 252 SHEET 6 G 7 VAL B 306 TYR B 309 1 O TYR B 309 N VAL B 281 SHEET 7 G 7 VAL B 300 VAL B 303 -1 N VAL B 301 O VAL B 308 SHEET 1 H 2 ILE B 338 GLU B 339 0 SHEET 2 H 2 ALA B 342 PHE B 343 -1 O ALA B 342 N GLU B 339 SITE 1 AC1 5 ARG A 199 LYS A 200 ALA A 201 ARG B 199 SITE 2 AC1 5 LYS B 200 SITE 1 AC2 3 HIS A 146 ARG A 149 ARG B 149 SITE 1 AC3 3 TYR A 331 SER A 334 SER A 335 SITE 1 AC4 6 ARG A 16 GLN A 75 PHE A 94 GLN A 96 SITE 2 AC4 6 GLN A 135 GOL A 406 SITE 1 AC5 4 TYR A 196 ASP A 197 VAL A 198 LEU A 266 SITE 1 AC6 4 LEU A 132 GLN A 135 ALA A 136 GOL A 404 SITE 1 AC7 5 ARG A 153 HOH A 576 HIS B 321 GLU B 324 SITE 2 AC7 5 HOH B 572 SITE 1 AC8 5 GLN B 96 PRO B 97 HIS B 98 GLU B 118 SITE 2 AC8 5 LEU B 119 SITE 1 AC9 3 HIS A 321 GLU A 324 ARG B 153 SITE 1 BC1 5 ARG B 166 LYS B 169 GLY B 248 ASP B 250 SITE 2 BC1 5 LYS B 276 SITE 1 BC2 4 LYS A 200 ALA B 201 GLU B 204 GLN B 205 SITE 1 BC3 4 GLY A 163 THR A 164 ARG B 26 LYS B 328 SITE 1 BC4 5 GLY B 176 VAL B 177 ALA B 178 HOH B 580 SITE 2 BC4 5 HOH B 583 CRYST1 162.318 162.318 73.883 90.00 90.00 120.00 P 6 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006161 0.003557 0.000000 0.00000 SCALE2 0.000000 0.007114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013535 0.00000