HEADER HYDROLASE 31-JAN-13 4J13 OBSLTE 06-AUG-14 4J13 4QXD TITLE STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF 3'(2'),5'-BISPHOSPHATE TITLE 2 NUCLEOTIDASE2 FROM ENTAMOEBA HISTOLYTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTAMOEBA HISTOLYTICA; SOURCE 3 ORGANISM_TAXID: 5759; SOURCE 4 STRAIN: HM-1:IMSS; SOURCE 5 GENE: EHI_179820; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET(28B) KEYWDS LI SENSITIVE/MG DEPENDENT PHOSPHATASE, HYDROLYSIS, ADINOSINE 3',5'- KEYWDS 2 BISPHOSPHATE(PAP)BINDING, DEPHOSPHORYLATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.F.TARIQUE,S.A.ABDUL REHMAN,C.BETZEL,S.GOURINATH REVDAT 2 06-AUG-14 4J13 1 OBSLTE REVDAT 1 05-FEB-14 4J13 0 JRNL AUTH K.F.TARIQUE,S.A.ABDUL REHMAN,C.BETZEL,S.GOURINATH JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF JRNL TITL 2 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE2 FROM ENTAMOEBA JRNL TITL 3 HISTOLYTICA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 975 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1181 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.10000 REMARK 3 B22 (A**2) : -2.57000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.336 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4638 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6282 ; 1.924 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 7.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;41.512 ;26.170 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;20.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.875 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 720 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3386 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H,K,L REMARK 3 TWIN FRACTION : 0.98 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K,H,-L REMARK 3 TWIN FRACTION : 0.02 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4J13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17989 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.100 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.324 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL OBTAINED FROM LOW RESOLUTION ANOMALOUS DATA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% MPD, 12.5% PEG1K, 12.5% PEG3350, REMARK 280 0.03M SALT MIXTURE, PH 6.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.37050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.53350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.14450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.53350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.37050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.14450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 108 MG MG A 302 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 28 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 GLU B 28 N - CA - C ANGL. DEV. = -20.0 DEGREES REMARK 500 SER B 36 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 GLU B 153 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 25 59.65 -110.28 REMARK 500 LYS A 27 20.39 -151.63 REMARK 500 ASP A 70 61.55 -101.42 REMARK 500 GLU A 72 -158.06 -138.43 REMARK 500 ASN A 73 39.33 -77.90 REMARK 500 LYS A 117 -1.48 73.40 REMARK 500 MET A 135 -44.89 -135.25 REMARK 500 GLU A 153 -127.60 49.09 REMARK 500 ASN A 176 38.28 -150.12 REMARK 500 SER A 184 31.09 -89.49 REMARK 500 GLN A 218 10.84 -143.99 REMARK 500 ASP A 240 171.02 -52.49 REMARK 500 LYS B 27 -26.72 -142.02 REMARK 500 LYS B 35 -139.48 55.62 REMARK 500 SER B 36 -5.81 -147.14 REMARK 500 VAL B 41 126.05 -173.35 REMARK 500 ASP B 70 48.96 -91.42 REMARK 500 GLU B 72 -156.64 -140.80 REMARK 500 THR B 84 158.16 -43.72 REMARK 500 LYS B 117 19.53 58.20 REMARK 500 MET B 135 -49.17 -130.37 REMARK 500 PRO B 142 -9.71 -59.59 REMARK 500 ASN B 146 50.60 37.35 REMARK 500 GLU B 153 -129.88 56.96 REMARK 500 LYS B 175 -39.55 -38.92 REMARK 500 GLN B 218 -33.45 -132.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 72 ASN B 73 -142.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 180 23.3 L L OUTSIDE RANGE REMARK 500 LYS B 35 24.3 L L OUTSIDE RANGE REMARK 500 GLU B 153 49.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 108 O REMARK 620 2 GLU B 68 OE1 164.9 REMARK 620 3 PO4 B 303 O4 97.9 91.3 REMARK 620 4 ASP B 106 OD2 90.6 82.1 168.5 REMARK 620 5 PO4 B 303 O2 107.6 87.2 63.0 107.0 REMARK 620 6 HOH B 401 O 82.3 85.4 91.9 97.0 153.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 109 OD1 REMARK 620 2 ASP A 223 OD2 104.5 REMARK 620 3 PO4 A 301 O3 94.9 158.6 REMARK 620 4 ASP A 106 OD2 79.2 89.5 85.4 REMARK 620 5 HOH A 401 O 175.3 80.2 80.4 100.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B 303 O2 REMARK 620 2 ASP B 109 OD1 104.6 REMARK 620 3 ASP B 223 OD2 161.9 93.4 REMARK 620 4 ASP B 106 OD1 95.7 86.6 83.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B 303 O3 REMARK 620 2 GLU B 68 OE2 85.3 REMARK 620 3 HOH B 411 O 121.3 81.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 301 O4 REMARK 620 2 GLU A 68 OE1 85.9 REMARK 620 3 ASP A 106 OD1 157.6 74.2 REMARK 620 4 PO4 A 301 O3 63.5 80.3 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 68 OE2 REMARK 620 2 PO4 A 301 O1 92.0 REMARK 620 3 HOH A 404 O 142.7 83.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 DBREF 4J13 A 1 285 UNP C4M633 C4M633_ENTHI 1 285 DBREF 4J13 B 1 285 UNP C4M633 C4M633_ENTHI 1 285 SEQADV 4J13 LEU A 286 UNP C4M633 EXPRESSION TAG SEQADV 4J13 GLN A 287 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS A 288 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS A 289 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS A 290 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS A 291 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS A 292 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS A 293 UNP C4M633 EXPRESSION TAG SEQADV 4J13 LEU B 286 UNP C4M633 EXPRESSION TAG SEQADV 4J13 GLN B 287 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS B 288 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS B 289 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS B 290 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS B 291 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS B 292 UNP C4M633 EXPRESSION TAG SEQADV 4J13 HIS B 293 UNP C4M633 EXPRESSION TAG SEQRES 1 A 293 MET GLN THR SER LEU PHE GLU PHE ALA ASN VAL LEU ILE SEQRES 2 A 293 THR ALA VAL LYS GLU ALA SER TYR SER ILE SER LYS PHE SEQRES 3 A 293 LYS GLU GLU VAL GLU ILE LYS TYR LYS SER ASP GLY SER SEQRES 4 A 293 GLU VAL THR GLN VAL ASP THR GLN SER GLN GLN ILE ILE SEQRES 5 A 293 PHE SER ILE ILE LYS ASN LYS TYR PRO THR ILE ASN ILE SEQRES 6 A 293 ILE GLY GLU GLU ASP VAL GLU ASN GLY ILE PRO ASP ASN SEQRES 7 A 293 GLN LEU PRO THR ILE THR GLN LEU SER PHE GLY SER LEU SEQRES 8 A 293 GLU ASN LYS ILE ILE ASN ILE ASN ASP ILE ILE ILE TYR SEQRES 9 A 293 VAL ASP PRO LEU ASP GLY THR ASP CYS TYR THR HIS LYS SEQRES 10 A 293 GLN TYR ASP SER VAL CYS VAL LEU VAL GLY VAL THR TYR SEQRES 11 A 293 LYS GLY LYS PRO MET ILE GLY ILE VAL SER LYS PRO PHE SEQRES 12 A 293 TYR ASN ASN GLU ILE THR PHE ALA ILE GLU ASN TYR ILE SEQRES 13 A 293 SER SER ILE SER LEU GLN PRO LEU ASN ASP LYS ILE ILE SEQRES 14 A 293 PHE VAL CYS SER LYS LYS ASN ASP ILE GLN HIS LEU ILE SEQRES 15 A 293 LYS SER PHE PRO ASP PRO TYR GLU VAL LYS TYR LYS GLY SEQRES 16 A 293 GLY SER GLY ALA LYS MET MET ALA ILE ILE HIS GLN GLU SEQRES 17 A 293 ALA ASP ILE TYR TYR HIS PRO LEU ILE GLN SER CYS THR SEQRES 18 A 293 TRP ASP THR LEU ALA ALA GLN VAL ILE LEU GLU ALA GLN SEQRES 19 A 293 GLY GLY ILE VAL CYS ASP ILE TYR GLY ASN PRO LEU CYS SEQRES 20 A 293 TYR PRO SER SER LYS LYS GLU SER MET ARG HIS LYS LYS SEQRES 21 A 293 GLY VAL LEU CYS LEU SER PRO ARG ALA LYS LYS TYR LEU SEQRES 22 A 293 PRO TYR MET LEU SER ILE SER LYS THR ILE LEU LEU LEU SEQRES 23 A 293 GLN HIS HIS HIS HIS HIS HIS SEQRES 1 B 293 MET GLN THR SER LEU PHE GLU PHE ALA ASN VAL LEU ILE SEQRES 2 B 293 THR ALA VAL LYS GLU ALA SER TYR SER ILE SER LYS PHE SEQRES 3 B 293 LYS GLU GLU VAL GLU ILE LYS TYR LYS SER ASP GLY SER SEQRES 4 B 293 GLU VAL THR GLN VAL ASP THR GLN SER GLN GLN ILE ILE SEQRES 5 B 293 PHE SER ILE ILE LYS ASN LYS TYR PRO THR ILE ASN ILE SEQRES 6 B 293 ILE GLY GLU GLU ASP VAL GLU ASN GLY ILE PRO ASP ASN SEQRES 7 B 293 GLN LEU PRO THR ILE THR GLN LEU SER PHE GLY SER LEU SEQRES 8 B 293 GLU ASN LYS ILE ILE ASN ILE ASN ASP ILE ILE ILE TYR SEQRES 9 B 293 VAL ASP PRO LEU ASP GLY THR ASP CYS TYR THR HIS LYS SEQRES 10 B 293 GLN TYR ASP SER VAL CYS VAL LEU VAL GLY VAL THR TYR SEQRES 11 B 293 LYS GLY LYS PRO MET ILE GLY ILE VAL SER LYS PRO PHE SEQRES 12 B 293 TYR ASN ASN GLU ILE THR PHE ALA ILE GLU ASN TYR ILE SEQRES 13 B 293 SER SER ILE SER LEU GLN PRO LEU ASN ASP LYS ILE ILE SEQRES 14 B 293 PHE VAL CYS SER LYS LYS ASN ASP ILE GLN HIS LEU ILE SEQRES 15 B 293 LYS SER PHE PRO ASP PRO TYR GLU VAL LYS TYR LYS GLY SEQRES 16 B 293 GLY SER GLY ALA LYS MET MET ALA ILE ILE HIS GLN GLU SEQRES 17 B 293 ALA ASP ILE TYR TYR HIS PRO LEU ILE GLN SER CYS THR SEQRES 18 B 293 TRP ASP THR LEU ALA ALA GLN VAL ILE LEU GLU ALA GLN SEQRES 19 B 293 GLY GLY ILE VAL CYS ASP ILE TYR GLY ASN PRO LEU CYS SEQRES 20 B 293 TYR PRO SER SER LYS LYS GLU SER MET ARG HIS LYS LYS SEQRES 21 B 293 GLY VAL LEU CYS LEU SER PRO ARG ALA LYS LYS TYR LEU SEQRES 22 B 293 PRO TYR MET LEU SER ILE SER LYS THR ILE LEU LEU LEU SEQRES 23 B 293 GLN HIS HIS HIS HIS HIS HIS HET PO4 A 301 5 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG B 301 1 HET MG B 302 1 HET PO4 B 303 5 HET MG B 304 1 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 MG 6(MG 2+) FORMUL 11 HOH *37(H2 O) HELIX 1 1 LEU A 5 LYS A 25 1 21 HELIX 2 2 GLN A 43 TYR A 60 1 18 HELIX 3 3 PRO A 76 LEU A 80 5 5 HELIX 4 4 GLY A 110 THR A 115 1 6 HELIX 5 5 GLN A 118 VAL A 122 5 5 HELIX 6 6 SER A 173 LEU A 181 5 9 HELIX 7 7 GLY A 198 HIS A 206 1 9 HELIX 8 8 CYS A 220 GLY A 235 1 16 HELIX 9 9 PRO A 267 LYS A 271 5 5 HELIX 10 10 TYR A 272 LYS A 281 1 10 HELIX 11 11 LEU B 5 LYS B 25 1 21 HELIX 12 12 THR B 42 TYR B 60 1 19 HELIX 13 13 PRO B 76 LEU B 80 5 5 HELIX 14 14 GLY B 110 HIS B 116 1 7 HELIX 15 15 GLN B 118 VAL B 122 5 5 HELIX 16 16 ILE B 178 ILE B 182 5 5 HELIX 17 17 GLY B 196 HIS B 206 1 11 HELIX 18 18 CYS B 220 GLY B 235 1 16 HELIX 19 19 PRO B 267 LYS B 271 5 5 HELIX 20 20 TYR B 272 SER B 280 1 9 HELIX 21 21 LYS B 281 ILE B 283 5 3 SHEET 1 A 2 GLN A 2 SER A 4 0 SHEET 2 A 2 ILE A 95 ASN A 97 -1 O ILE A 96 N THR A 3 SHEET 1 B 2 ILE A 32 TYR A 34 0 SHEET 2 B 2 GLU A 40 THR A 42 -1 O VAL A 41 N LYS A 33 SHEET 1 C 6 ASN A 64 GLY A 67 0 SHEET 2 C 6 ILE A 101 ASP A 109 1 O ILE A 103 N ILE A 66 SHEET 3 C 6 CYS A 123 TYR A 130 -1 O GLY A 127 N TYR A 104 SHEET 4 C 6 LYS A 133 LYS A 141 -1 O SER A 140 N VAL A 124 SHEET 5 C 6 GLU A 147 ILE A 152 -1 O THR A 149 N VAL A 139 SHEET 6 C 6 TYR A 155 ILE A 156 -1 O TYR A 155 N ILE A 152 SHEET 1 D 5 TYR A 189 TYR A 193 0 SHEET 2 D 5 ILE A 168 CYS A 172 1 N PHE A 170 O LYS A 192 SHEET 3 D 5 ILE A 211 HIS A 214 1 N ILE A 211 O ILE A 169 SHEET 4 D 5 VAL A 262 LEU A 265 -1 O CYS A 264 N TYR A 212 SHEET 5 D 5 ILE A 237 CYS A 239 -1 N ILE A 237 O LEU A 265 SHEET 1 E 2 GLN B 2 SER B 4 0 SHEET 2 E 2 ILE B 95 ASN B 97 -1 O ILE B 96 N THR B 3 SHEET 1 F 6 ASN B 64 GLY B 67 0 SHEET 2 F 6 ILE B 101 ASP B 109 1 O VAL B 105 N ILE B 66 SHEET 3 F 6 CYS B 123 TYR B 130 -1 O LEU B 125 N ASP B 106 SHEET 4 F 6 LYS B 133 LYS B 141 -1 O ILE B 138 N VAL B 126 SHEET 5 F 6 GLU B 147 ILE B 152 -1 O THR B 149 N VAL B 139 SHEET 6 F 6 TYR B 155 ILE B 156 -1 O TYR B 155 N ILE B 152 SHEET 1 G 5 TYR B 189 TYR B 193 0 SHEET 2 G 5 ILE B 168 CYS B 172 1 N PHE B 170 O LYS B 192 SHEET 3 G 5 ILE B 211 HIS B 214 1 O ILE B 211 N VAL B 171 SHEET 4 G 5 VAL B 262 LEU B 265 -1 O VAL B 262 N HIS B 214 SHEET 5 G 5 ILE B 237 CYS B 239 -1 N ILE B 237 O LEU B 265 LINK O LEU B 108 MG MG B 301 1555 1555 1.73 LINK OD1 ASP A 109 MG MG A 304 1555 1555 1.82 LINK MG MG B 302 O2 PO4 B 303 1555 1555 1.90 LINK OD1 ASP B 109 MG MG B 302 1555 1555 1.93 LINK OE1 GLU B 68 MG MG B 301 1555 1555 2.02 LINK OD2 ASP A 223 MG MG A 304 1555 1555 2.04 LINK O3 PO4 B 303 MG MG B 304 1555 1555 2.08 LINK O3 PO4 A 301 MG MG A 304 1555 1555 2.10 LINK OD2 ASP B 223 MG MG B 302 1555 1555 2.13 LINK OE2 GLU B 68 MG MG B 304 1555 1555 2.16 LINK O4 PO4 A 301 MG MG A 302 1555 1555 2.18 LINK MG MG B 301 O4 PO4 B 303 1555 1555 2.19 LINK OE1 GLU A 68 MG MG A 302 1555 1555 2.20 LINK OD2 ASP B 106 MG MG B 301 1555 1555 2.22 LINK OE2 GLU A 68 MG MG A 303 1555 1555 2.29 LINK OD1 ASP A 106 MG MG A 302 1555 1555 2.32 LINK O1 PO4 A 301 MG MG A 303 1555 1555 2.34 LINK OD2 ASP A 106 MG MG A 304 1555 1555 2.47 LINK MG MG B 301 O2 PO4 B 303 1555 1555 2.48 LINK OD1 ASP B 106 MG MG B 302 1555 1555 2.52 LINK O3 PO4 A 301 MG MG A 302 1555 1555 2.52 LINK MG MG B 304 O HOH B 411 1555 1555 1.89 LINK MG MG A 304 O HOH A 401 1555 1555 2.30 LINK MG MG B 301 O HOH B 401 1555 1555 2.33 LINK MG MG A 303 O HOH A 404 1555 1555 2.36 SITE 1 AC1 12 GLU A 68 ASP A 106 LEU A 108 ASP A 109 SITE 2 AC1 12 GLY A 110 THR A 111 MG A 302 MG A 303 SITE 3 AC1 12 MG A 304 HOH A 401 HOH A 402 HOH A 403 SITE 1 AC2 6 GLU A 68 ASP A 106 LEU A 108 ASP A 109 SITE 2 AC2 6 THR A 111 PO4 A 301 SITE 1 AC3 3 GLU A 68 PO4 A 301 HOH A 404 SITE 1 AC4 5 ASP A 106 ASP A 109 ASP A 223 PO4 A 301 SITE 2 AC4 5 HOH A 401 SITE 1 AC5 6 GLU B 68 ASP B 106 LEU B 108 ASP B 109 SITE 2 AC5 6 PO4 B 303 HOH B 401 SITE 1 AC6 4 ASP B 106 ASP B 109 ASP B 223 PO4 B 303 SITE 1 AC7 11 GLU B 68 ASP B 106 LEU B 108 ASP B 109 SITE 2 AC7 11 GLY B 110 THR B 111 MG B 301 MG B 302 SITE 3 AC7 11 MG B 304 HOH B 402 HOH B 411 SITE 1 AC8 3 GLU B 68 PO4 B 303 HOH B 411 CRYST1 72.741 76.289 101.067 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009894 0.00000