HEADER OXIDOREDUCTASE 01-FEB-13 4J1S TITLE CRYSTAL STRUCTURE OF A KETOREDUCTASE DOMAIN FROM THE BACILLAENE TITLE 2 ASSEMBLY LINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE PKSJ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKS; COMPND 5 EC: 1.1.1.100; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: BSU17180, PKSJ, PKSJ (AMINO ACIDS 2669-3111), PKSK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ROSSMANN FOLD, KETOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHENG,A.T.KEATINGE-CLAY REVDAT 5 20-SEP-23 4J1S 1 SEQADV REVDAT 4 03-SEP-14 4J1S 1 JRNL REVDAT 3 13-AUG-14 4J1S 1 JRNL REVDAT 2 26-MAR-14 4J1S 1 JRNL REVDAT 1 19-MAR-14 4J1S 0 JRNL AUTH S.K.PIASECKI,J.ZHENG,A.J.AXELROD,M.E DETELICH, JRNL AUTH 2 A.T.KEATINGE-CLAY JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF A TRANS-ACYLTRANSFERASE JRNL TITL 2 POLYKETIDE ASSEMBLY LINE ENZYME THAT CATALYZES JRNL TITL 3 STEREOSELECTIVE ALPHA- AND BETA-KETOREDUCTION. JRNL REF PROTEINS V. 82 2067 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24634061 JRNL DOI 10.1002/PROT.24561 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : 1.51000 REMARK 3 B33 (A**2) : -2.27000 REMARK 3 B12 (A**2) : 0.76000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.510 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.429 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3391 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4557 ; 0.845 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 8.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;38.404 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;18.349 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2531 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0677 9.4783 107.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.1484 REMARK 3 T33: 0.2253 T12: 0.1341 REMARK 3 T13: 0.0681 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.1678 L22: 1.9354 REMARK 3 L33: 4.3048 L12: -0.3427 REMARK 3 L13: -0.5520 L23: -0.2035 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.0813 S13: -0.0031 REMARK 3 S21: 0.0717 S22: 0.3344 S23: -0.1073 REMARK 3 S31: -0.2635 S32: -0.0903 S33: -0.2812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4J1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979468 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8859 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 51.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4J1Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 25% PEG 1000, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.69467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.38933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.54200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 184.23667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.84733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ARG A 16 REMARK 465 GLU A 17 REMARK 465 ASP A 18 REMARK 465 GLU A 19 REMARK 465 ASP A 20 REMARK 465 LEU A 168 REMARK 465 PRO A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 SER A 425 REMARK 465 ALA A 426 REMARK 465 GLY A 427 REMARK 465 SER A 428 REMARK 465 LYS A 429 REMARK 465 ALA A 430 REMARK 465 LYS A 431 REMARK 465 ARG A 432 REMARK 465 ASN A 433 REMARK 465 ASP A 434 REMARK 465 GLN A 435 REMARK 465 ARG A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 ASP A 439 REMARK 465 GLN A 440 REMARK 465 ASP A 441 REMARK 465 GLN A 442 REMARK 465 GLY A 443 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 379 N THR A 383 1.98 REMARK 500 OG1 THR A 24 O ARG A 86 2.07 REMARK 500 O ALA A 228 OG SER A 231 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 251 CG HIS A 251 CD2 0.057 REMARK 500 HIS A 280 CG HIS A 280 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 79.54 -157.84 REMARK 500 VAL A 294 -68.26 -109.07 REMARK 500 LYS A 351 -0.93 85.73 REMARK 500 MET A 370 -121.46 61.44 REMARK 500 ALA A 374 -129.23 51.91 REMARK 500 PRO A 388 120.82 -39.92 REMARK 500 ASP A 405 36.06 70.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 54 GLU A 55 -148.19 REMARK 500 GLU A 367 GLY A 368 146.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J1Q RELATED DB: PDB REMARK 900 APO-PROTEIN DBREF 4J1S A 1 443 UNP P40806 PKSJ_BACSU 2669 3111 SEQADV 4J1S MET A -20 UNP P40806 EXPRESSION TAG SEQADV 4J1S GLY A -19 UNP P40806 EXPRESSION TAG SEQADV 4J1S SER A -18 UNP P40806 EXPRESSION TAG SEQADV 4J1S SER A -17 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -16 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -15 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -14 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -13 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -12 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -11 UNP P40806 EXPRESSION TAG SEQADV 4J1S SER A -10 UNP P40806 EXPRESSION TAG SEQADV 4J1S SER A -9 UNP P40806 EXPRESSION TAG SEQADV 4J1S GLY A -8 UNP P40806 EXPRESSION TAG SEQADV 4J1S LEU A -7 UNP P40806 EXPRESSION TAG SEQADV 4J1S VAL A -6 UNP P40806 EXPRESSION TAG SEQADV 4J1S PRO A -5 UNP P40806 EXPRESSION TAG SEQADV 4J1S ARG A -4 UNP P40806 EXPRESSION TAG SEQADV 4J1S GLY A -3 UNP P40806 EXPRESSION TAG SEQADV 4J1S SER A -2 UNP P40806 EXPRESSION TAG SEQADV 4J1S HIS A -1 UNP P40806 EXPRESSION TAG SEQADV 4J1S MET A 0 UNP P40806 EXPRESSION TAG SEQRES 1 A 464 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 464 LEU VAL PRO ARG GLY SER HIS MET GLU ARG LEU MET LEU SEQRES 3 A 464 GLU PRO VAL TRP GLU LYS GLN ASN GLU GLU ARG GLU ASP SEQRES 4 A 464 GLU ASP LEU SER TYR THR GLU HIS ILE ILE VAL LEU PHE SEQRES 5 A 464 GLU THR GLU ARG SER VAL THR ASP SER ILE ALA SER HIS SEQRES 6 A 464 MET LYS ASP ALA ARG VAL ILE THR LEU ASN GLU ALA VAL SEQRES 7 A 464 GLY HIS ILE ALA GLU ARG TYR GLN CYS TYR MET GLN ASN SEQRES 8 A 464 ILE PHE GLU LEU LEU GLN SER LYS VAL ARG LYS LEU SER SEQRES 9 A 464 ALA GLY ARG ILE ILE ILE GLN ALA ILE VAL PRO LEU GLU SEQRES 10 A 464 LYS GLU LYS GLN LEU PHE ALA GLY VAL SER GLY LEU PHE SEQRES 11 A 464 LYS THR ALA GLU ILE GLU PHE SER LYS LEU THR ALA GLN SEQRES 12 A 464 VAL ILE GLU ILE GLU LYS PRO GLU GLU MET ILE ASP LEU SEQRES 13 A 464 HIS LEU LYS LEU LYS ASP ASP SER ARG ARG PRO PHE ASP SEQRES 14 A 464 LYS GLN ILE ARG TYR GLU ALA GLY TYR ARG PHE VAL LYS SEQRES 15 A 464 GLY TRP ARG GLU MET VAL LEU PRO SER ALA ASP THR LEU SEQRES 16 A 464 HIS MET PRO TRP ARG ASP GLU GLY VAL TYR LEU ILE THR SEQRES 17 A 464 GLY GLY ALA GLY SER LEU GLY LEU LEU PHE ALA LYS GLU SEQRES 18 A 464 ILE ALA ASN ARG THR GLY ARG SER THR ILE VAL LEU THR SEQRES 19 A 464 GLY ARG SER VAL LEU SER GLU ASP LYS GLU ASN GLU LEU SEQRES 20 A 464 GLU ALA LEU ARG SER ILE GLY ALA GLU VAL VAL TYR ARG SEQRES 21 A 464 GLU ALA ASP VAL SER ASP GLN HIS ALA VAL ARG HIS LEU SEQRES 22 A 464 LEU GLU GLU ILE LYS GLU ARG TYR GLY THR LEU ASN GLY SEQRES 23 A 464 ILE ILE HIS GLY ALA GLY SER SER LYS ASP ARG PHE ILE SEQRES 24 A 464 ILE HIS LYS THR ASN GLU GLU PHE GLN GLU VAL LEU GLN SEQRES 25 A 464 PRO LYS VAL SER GLY LEU LEU HIS VAL ASP GLU CYS SER SEQRES 26 A 464 LYS ASP PHE PRO LEU ASP PHE PHE ILE PHE PHE SER SER SEQRES 27 A 464 VAL SER GLY CYS LEU GLY ASN ALA GLY GLN ALA ASP TYR SEQRES 28 A 464 ALA ALA ALA ASN SER PHE MET ASP ALA PHE ALA GLU TYR SEQRES 29 A 464 ARG ARG SER LEU ALA ALA SER LYS LYS ARG PHE GLY SER SEQRES 30 A 464 THR ILE SER PHE ASN TRP PRO LEU TRP GLU GLU GLY GLY SEQRES 31 A 464 MET GLN VAL GLY ALA GLU ASP GLU LYS ARG MET LEU LYS SEQRES 32 A 464 THR THR GLY MET VAL PRO MET PRO THR ASP SER GLY LEU SEQRES 33 A 464 LYS ALA PHE TYR GLN GLY ILE VAL SER ASP LYS PRO GLN SEQRES 34 A 464 VAL PHE VAL MET GLU GLY GLN LEU GLN LYS MET LYS GLN SEQRES 35 A 464 LYS LEU LEU SER ALA GLY SER LYS ALA LYS ARG ASN ASP SEQRES 36 A 464 GLN ARG LYS ALA ASP GLN ASP GLN GLY HELIX 1 1 GLU A 34 MET A 45 1 12 HELIX 2 2 HIS A 59 LYS A 78 1 20 HELIX 3 3 LYS A 78 GLY A 85 1 8 HELIX 4 4 GLU A 98 ALA A 103 5 6 HELIX 5 5 GLY A 104 PHE A 116 1 13 HELIX 6 6 ASP A 134 ARG A 144 1 11 HELIX 7 7 GLY A 191 GLY A 206 1 16 HELIX 8 8 SER A 219 ILE A 232 1 14 HELIX 9 9 ASP A 245 TYR A 260 1 16 HELIX 10 10 THR A 282 GLN A 291 1 10 HELIX 11 11 VAL A 294 SER A 304 1 11 HELIX 12 12 VAL A 318 GLY A 323 1 6 HELIX 13 13 GLN A 327 SER A 350 1 24 HELIX 14 14 GLU A 375 GLY A 385 1 11 HELIX 15 15 PRO A 390 ASP A 405 1 16 HELIX 16 16 GLN A 415 LEU A 424 1 10 SHEET 1 A14 ARG A 49 LEU A 53 0 SHEET 2 A14 GLU A 25 PHE A 31 1 N ILE A 28 O ILE A 51 SHEET 3 A14 ILE A 87 PRO A 94 1 O ILE A 88 N ILE A 27 SHEET 4 A14 LEU A 119 ILE A 126 1 O ILE A 126 N VAL A 93 SHEET 5 A14 GLN A 150 GLU A 154 1 O TYR A 153 N GLU A 125 SHEET 6 A14 TYR A 157 GLU A 165 -1 O PHE A 159 N ARG A 152 SHEET 7 A14 GLU A 1 GLU A 10 -1 N VAL A 8 O GLY A 162 SHEET 8 A14 GLN A 408 GLY A 414 -1 O PHE A 410 N LEU A 5 SHEET 9 A14 SER A 356 TRP A 362 1 N ASN A 361 O VAL A 409 SHEET 10 A14 PHE A 311 SER A 317 1 N PHE A 314 O ILE A 358 SHEET 11 A14 GLY A 265 HIS A 268 1 N ILE A 266 O ILE A 313 SHEET 12 A14 VAL A 183 THR A 187 1 N LEU A 185 O ILE A 267 SHEET 13 A14 THR A 209 THR A 213 1 O THR A 209 N TYR A 184 SHEET 14 A14 GLU A 235 TYR A 238 1 O GLU A 235 N ILE A 210 CRYST1 59.551 59.551 221.084 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016792 0.009695 0.000000 0.00000 SCALE2 0.000000 0.019390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004523 0.00000