HEADER OXIDOREDUCTASE 04-FEB-13 4J2H TITLE CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN ALCOHOL DEHYDROGENASE FROM TITLE 2 SINORHIZOBIUM MELILOTI 1021 (TARGET NYSGRC-011708) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN ALCOHOL DEHYDROGENASE-RELATED DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: RA0207, SMA0389; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS SHORT-CHAIN DEHYDROGENASE, STRUCTURAL GENOMICS, NYSGRC, PSI-BIOLOGY, KEYWDS 2 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, DEHYDROGENASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,A.GIZZI,M.AHMED,N.BANU,R.BHOSLE,J.BONANNO,S.CHAMALA, AUTHOR 2 S.CHOWDHURY,A.FISER,A.S.GLENN,J.HAMMONDS,B.HILLERICH,K.KHAFIZOV, AUTHOR 3 J.LAFLEUR,J.D.LOVE,M.STEAD,R.SEIDEL,R.TORO,S.C.ALMO,NEW YORK AUTHOR 4 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 20-NOV-24 4J2H 1 REMARK SEQADV LINK REVDAT 1 01-MAY-13 4J2H 0 JRNL AUTH P.SAMPATHKUMAR,A.GIZZI,M.AHMED,N.BANU,R.BHOSLE,J.BONANNO, JRNL AUTH 2 S.CHAMALA,S.CHOWDHURY,A.FISER,A.S.GLENN,J.HAMMONDS, JRNL AUTH 3 B.HILLERICH,K.KHAFIZOV,J.LAFLEUR,J.D.LOVE,M.STEAD,R.SEIDEL, JRNL AUTH 4 R.TORO,S.C.ALMO, JRNL AUTH 5 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN ALCOHOL JRNL TITL 2 DEHYDROGENASE FROM SINORHIZOBIUM MELILOTI 1021 (TARGET JRNL TITL 3 NYSGRC-011708) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1846 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1909 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1843 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2579 ; 1.276 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4205 ; 0.771 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 253 ; 5.874 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;34.418 ;22.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;13.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.060 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2206 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 441 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4734 -3.9192 14.9271 REMARK 3 T TENSOR REMARK 3 T11: 0.4271 T22: 0.3042 REMARK 3 T33: 0.3164 T12: -0.1292 REMARK 3 T13: 0.0802 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 1.5075 L22: 1.3200 REMARK 3 L33: 2.9053 L12: 0.2188 REMARK 3 L13: 0.1130 L23: -0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: -0.2815 S13: -0.1217 REMARK 3 S21: 0.3554 S22: -0.2309 S23: 0.3585 REMARK 3 S31: 0.2658 S32: -0.8085 S33: 0.1502 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 307 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6839 -16.7946 3.2274 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.1861 REMARK 3 T33: 0.2587 T12: 0.0670 REMARK 3 T13: 0.0538 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 125.9010 L22: 24.4968 REMARK 3 L33: 43.6402 L12: -47.8992 REMARK 3 L13: -67.0810 L23: 32.5597 REMARK 3 S TENSOR REMARK 3 S11: -0.6209 S12: -0.7554 S13: 0.3282 REMARK 3 S21: 0.3820 S22: 0.7307 S23: -0.0830 REMARK 3 S31: 0.4931 S32: 0.8885 S33: -0.1098 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4J2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 41.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 42.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.99800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL; RESERVOIR (MCSG4 #82; G10: 0.1 M SODIUM REMARK 280 CITRATE, 20% (W/V) PEG 4000, 20% (V/V) 2-PROPANOL); REMARK 280 CRYOPROTECTION (30% ETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.72167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.44333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.72167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.44333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.72167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.44333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.72167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.44333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 103.87500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 103.87500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 MSE A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 88 113.10 -162.46 REMARK 500 ALA A 136 -122.07 -100.65 REMARK 500 CYS A 145 -149.64 -98.41 REMARK 500 MSE A 196 55.43 -99.73 REMARK 500 ASP A 203 105.82 -42.98 REMARK 500 ASP A 248 14.51 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 307 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 251 O REMARK 620 2 SER A 254 O 104.0 REMARK 620 3 HOH A 429 O 90.4 90.0 REMARK 620 4 HOH A 430 O 103.3 110.6 151.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011708 RELATED DB: TARGETTRACK DBREF 4J2H A 1 255 UNP Q930I9 Q930I9_RHIME 1 255 SEQADV 4J2H SER A -1 UNP Q930I9 EXPRESSION TAG SEQADV 4J2H MSE A 0 UNP Q930I9 EXPRESSION TAG SEQRES 1 A 257 SER MSE MSE THR SER PRO ILE PHE ASP LEU SER GLY ARG SEQRES 2 A 257 ARG ALA LEU VAL THR GLY ALA SER ARG GLY ILE GLY GLN SEQRES 3 A 257 SER ILE ALA VAL ALA LEU ALA GLU ALA GLY ALA HIS VAL SEQRES 4 A 257 ALA VAL THR ALA ARG THR VAL GLU GLY LEU ALA GLU THR SEQRES 5 A 257 ARG ALA LEU ILE GLU LYS THR GLY ARG ARG ALA VAL ALA SEQRES 6 A 257 LEU ALA GLN ASP VAL ARG ASP VAL GLU ALA CYS ALA SER SEQRES 7 A 257 VAL THR ARG ALA ALA ALA GLU GLY LEU GLY GLY LEU ASP SEQRES 8 A 257 ILE LEU VAL ASN ASN ALA GLY PHE GLU ASN VAL ARG PRO SEQRES 9 A 257 SER PHE ASP VAL ASP GLU ALA LEU TRP ASP THR ILE VAL SEQRES 10 A 257 SER THR ASN LEU LYS GLY ALA PHE PHE CYS ALA GLN ALA SEQRES 11 A 257 ALA GLY ARG ILE MSE ALA ASP ALA ASN GLY GLY ALA ILE SEQRES 12 A 257 VAL ASN LEU CYS SER LEU THR SER TYR VAL GLY ILE PRO SEQRES 13 A 257 THR ALA VAL PRO TYR GLY ALA SER LYS SER GLY LEU LEU SEQRES 14 A 257 GLY VAL THR ARG ALA LEU ALA THR GLU TRP ALA ALA HIS SEQRES 15 A 257 ASN ILE ARG VAL ASN ALA ILE ALA PRO GLY TYR PHE ARG SEQRES 16 A 257 THR ALA MSE THR ALA GLY PHE TYR GLU ASP GLU ASP TRP SEQRES 17 A 257 GLN SER ARG MSE LEU GLU LYS ILE PRO GLN ARG ARG PHE SEQRES 18 A 257 GLY LYS GLU SER ASP ILE GLY GLY VAL ALA VAL PHE LEU SEQRES 19 A 257 CYS SER ASP ALA ALA ALA TYR ILE THR GLY HIS CYS ILE SEQRES 20 A 257 PRO ALA ASP GLY GLY TYR LEU ALA SER ILE MODRES 4J2H MSE A 133 MET SELENOMETHIONINE MODRES 4J2H MSE A 196 MET SELENOMETHIONINE MODRES 4J2H MSE A 210 MET SELENOMETHIONINE HET MSE A 133 8 HET MSE A 196 8 HET MSE A 210 8 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET NA A 306 1 HET 1PE A 307 13 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 NA NA 1+ FORMUL 8 1PE C10 H22 O6 FORMUL 9 HOH *66(H2 O) HELIX 1 1 ARG A 20 ALA A 33 1 14 HELIX 2 2 VAL A 44 GLY A 46 5 3 HELIX 3 3 LEU A 47 LYS A 56 1 10 HELIX 4 4 ASP A 70 GLY A 86 1 17 HELIX 5 5 PRO A 102 VAL A 106 5 5 HELIX 6 6 ASP A 107 LEU A 119 1 13 HELIX 7 7 LEU A 119 ALA A 136 1 18 HELIX 8 8 SER A 146 TYR A 150 5 5 HELIX 9 9 ALA A 156 ALA A 178 1 23 HELIX 10 10 PHE A 192 MSE A 196 5 5 HELIX 11 11 ALA A 198 GLU A 202 5 5 HELIX 12 12 ASP A 203 GLU A 212 1 10 HELIX 13 13 LYS A 221 ASP A 224 5 4 HELIX 14 14 ILE A 225 SER A 234 1 10 HELIX 15 15 ASP A 235 ALA A 238 5 4 SHEET 1 A 7 ALA A 61 ALA A 65 0 SHEET 2 A 7 HIS A 36 ALA A 41 1 N VAL A 39 O VAL A 62 SHEET 3 A 7 ARG A 12 VAL A 15 1 N ALA A 13 O HIS A 36 SHEET 4 A 7 ILE A 90 ASN A 93 1 O VAL A 92 N LEU A 14 SHEET 5 A 7 GLY A 139 LEU A 144 1 O VAL A 142 N LEU A 91 SHEET 6 A 7 ILE A 182 PRO A 189 1 O ARG A 183 N ILE A 141 SHEET 7 A 7 CYS A 244 ALA A 247 1 O ILE A 245 N ALA A 186 LINK C ILE A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N ALA A 134 1555 1555 1.33 LINK C ALA A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N THR A 197 1555 1555 1.33 LINK C ARG A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N LEU A 211 1555 1555 1.33 LINK O TYR A 251 NA NA A 306 1555 1555 2.25 LINK O SER A 254 NA NA A 306 1555 1555 2.14 LINK NA NA A 306 O HOH A 429 1555 1555 2.51 LINK NA NA A 306 O HOH A 430 1555 1555 2.66 SITE 1 AC1 4 TYR A 150 HIS A 243 CYS A 244 EDO A 304 SITE 1 AC2 4 SER A 149 TYR A 150 ARG A 171 HOH A 463 SITE 1 AC3 4 SER A 146 LEU A 147 PRO A 189 GLY A 190 SITE 1 AC4 5 ARG A 171 GLY A 242 HIS A 243 PRO A 246 SITE 2 AC4 5 EDO A 301 SITE 1 AC5 3 GLY A 139 ASN A 181 ARG A 183 SITE 1 AC6 4 TYR A 251 SER A 254 HOH A 429 HOH A 430 SITE 1 AC7 9 GLU A 98 ASN A 99 TYR A 159 TYR A 191 SITE 2 AC7 9 TYR A 201 TRP A 206 MSE A 210 LYS A 213 SITE 3 AC7 9 ILE A 255 CRYST1 103.875 103.875 101.165 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009627 0.005558 0.000000 0.00000 SCALE2 0.000000 0.011116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009885 0.00000