HEADER VIRAL PROTEIN 05-FEB-13 4J2R TITLE MIDDLE DOMAIN OF INFLUENZA A VIRUS RNA-DEPENDENT POLYMERASE PB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MIDDLE DOMAIN, UNP RESIDUES 320-482; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 211044; SOURCE 4 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 5 GENE: PB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CAP-BINDING DOMAIN, CAP-SNATCHING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.QIU,T.TSURUMURA,Y.TSUMORI,D.HATAKEYAMA,T.KUZUHARA,H.TSUGE REVDAT 2 08-NOV-23 4J2R 1 SEQADV REVDAT 1 05-FEB-14 4J2R 0 JRNL AUTH T.TSURUMURA,H.QIU,T.YOSHIDA,Y.TSUMORI,H.TSUGE JRNL TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF JRNL TITL 2 A SURFACE MUTANT OF THE MIDDLE DOMAIN OF PB2 FROM HUMAN JRNL TITL 3 INFLUENZA A (H1N1) VIRUS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 70 72 2014 JRNL REFN ESSN 1744-3091 JRNL PMID 24419622 JRNL DOI 10.1107/S2053230X13032603 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 15240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1035 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.412 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2618 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2612 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3508 ; 1.787 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5974 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 7.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;34.313 ;22.787 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;18.680 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.408 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2940 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 630 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 482 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7832 -36.8273 -24.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.0110 REMARK 3 T33: 0.1459 T12: -0.0090 REMARK 3 T13: -0.0274 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.6588 L22: 1.0365 REMARK 3 L33: 0.2026 L12: -0.5773 REMARK 3 L13: -0.2329 L23: 0.4338 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.0562 S13: -0.1065 REMARK 3 S21: -0.1060 S22: -0.0038 S23: 0.1207 REMARK 3 S31: -0.0411 S32: -0.0049 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 320 B 482 REMARK 3 ORIGIN FOR THE GROUP (A): 64.7617 -46.5124 -13.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.0762 REMARK 3 T33: 0.0267 T12: -0.0192 REMARK 3 T13: -0.0022 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.7028 L22: 0.4167 REMARK 3 L33: 0.3846 L12: 0.0396 REMARK 3 L13: 0.2282 L23: 0.2196 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.0322 S13: 0.0198 REMARK 3 S21: 0.0350 S22: -0.1058 S23: 0.0515 REMARK 3 S31: 0.0286 S32: 0.0384 S33: 0.0580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4J2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 31.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 45.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: PDB ENTRY 2VQZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAH2PO4, 0.1M KH2PO4, 0.1M MES REMARK 280 (PH 5.9), 0.8M NACL, 4% (V/V) 1-PROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.98450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.26300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.75550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.26300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.98450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.75550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.98450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.75550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.26300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.75550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.98450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.26300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 HIS A 316 REMARK 465 MET A 317 REMARK 465 ARG A 318 REMARK 465 ILE A 319 REMARK 465 MET A 483 REMARK 465 GLY A 484 REMARK 465 SER A 485 REMARK 465 GLY A 486 REMARK 465 CYS A 487 REMARK 465 GLY B 314 REMARK 465 SER B 315 REMARK 465 HIS B 316 REMARK 465 MET B 317 REMARK 465 ARG B 318 REMARK 465 ILE B 319 REMARK 465 MET B 483 REMARK 465 GLY B 484 REMARK 465 SER B 485 REMARK 465 GLY B 486 REMARK 465 CYS B 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 323 174.72 179.59 REMARK 500 SER A 334 154.67 169.34 REMARK 500 ARG A 340 135.66 -170.73 REMARK 500 ALA A 377 -159.36 -130.52 REMARK 500 THR A 378 109.38 -56.95 REMARK 500 ASN A 419 54.72 -144.28 REMARK 500 SER B 322 147.64 -34.36 REMARK 500 THR B 378 99.86 -49.95 REMARK 500 ASN B 419 50.95 -147.62 REMARK 500 ASP B 455 26.11 -71.82 REMARK 500 SER B 481 146.00 -179.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CW4 RELATED DB: PDB REMARK 900 LARGE C-TERMINAL DOMAIN OF INFLUENZA A VIRUS RNA-DEPENDENT REMARK 900 POLYMERASE PB2 DBREF 4J2R A 318 484 UNP P03428 PB2_I34A1 318 484 DBREF 4J2R B 318 484 UNP P03428 PB2_I34A1 318 484 SEQADV 4J2R GLY A 314 UNP P03428 EXPRESSION TAG SEQADV 4J2R SER A 315 UNP P03428 EXPRESSION TAG SEQADV 4J2R HIS A 316 UNP P03428 EXPRESSION TAG SEQADV 4J2R MET A 317 UNP P03428 EXPRESSION TAG SEQADV 4J2R SER A 485 UNP P03428 EXPRESSION TAG SEQADV 4J2R GLY A 486 UNP P03428 EXPRESSION TAG SEQADV 4J2R CYS A 487 UNP P03428 EXPRESSION TAG SEQADV 4J2R GLY B 314 UNP P03428 EXPRESSION TAG SEQADV 4J2R SER B 315 UNP P03428 EXPRESSION TAG SEQADV 4J2R HIS B 316 UNP P03428 EXPRESSION TAG SEQADV 4J2R MET B 317 UNP P03428 EXPRESSION TAG SEQADV 4J2R SER B 485 UNP P03428 EXPRESSION TAG SEQADV 4J2R GLY B 486 UNP P03428 EXPRESSION TAG SEQADV 4J2R CYS B 487 UNP P03428 EXPRESSION TAG SEQRES 1 A 174 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 A 174 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL LYS SEQRES 3 A 174 ARG GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 A 174 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 A 174 VAL GLY ARG ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 A 174 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASP GLU SEQRES 7 A 174 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 A 174 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 A 174 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 A 174 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 A 174 VAL LEU PHE GLN ASN TRP GLY VAL GLU PRO ILE ASP ASN SEQRES 12 A 174 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 A 174 SER ILE GLU MET SER MET ARG GLY VAL ARG ILE SER LYS SEQRES 14 A 174 MET GLY SER GLY CYS SEQRES 1 B 174 GLY SER HIS MET ARG ILE SER SER SER PHE SER PHE GLY SEQRES 2 B 174 GLY PHE THR PHE LYS ARG THR SER GLY SER SER VAL LYS SEQRES 3 B 174 ARG GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU SEQRES 4 B 174 LYS ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET SEQRES 5 B 174 VAL GLY ARG ARG ALA THR ALA ILE LEU ARG LYS ALA THR SEQRES 6 B 174 ARG ARG LEU ILE GLN LEU ILE VAL SER GLY ARG ASP GLU SEQRES 7 B 174 GLN SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SEQRES 8 B 174 SER GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP SEQRES 9 B 174 LEU ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO SEQRES 10 B 174 MET HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS SEQRES 11 B 174 VAL LEU PHE GLN ASN TRP GLY VAL GLU PRO ILE ASP ASN SEQRES 12 B 174 VAL MET GLY MET ILE GLY ILE LEU PRO ASP MET THR PRO SEQRES 13 B 174 SER ILE GLU MET SER MET ARG GLY VAL ARG ILE SER LYS SEQRES 14 B 174 MET GLY SER GLY CYS FORMUL 3 HOH *71(H2 O) HELIX 1 1 ASP A 390 GLN A 406 1 17 HELIX 2 2 GLU A 407 ALA A 413 1 7 HELIX 3 3 ASN A 429 ASP A 441 1 13 HELIX 4 4 ALA A 442 ASN A 448 1 7 HELIX 5 5 ASP B 390 GLN B 406 1 17 HELIX 6 6 GLU B 407 ALA B 413 1 7 HELIX 7 7 ASN B 429 ASP B 441 1 13 HELIX 8 8 ALA B 442 TRP B 449 1 8 SHEET 1 A 6 SER A 322 PHE A 325 0 SHEET 2 A 6 PHE A 328 SER A 334 -1 O PHE A 330 N PHE A 323 SHEET 3 A 6 GLU A 361 VAL A 366 -1 O GLU A 362 N THR A 333 SHEET 4 A 6 ALA A 370 ALA A 377 -1 O LEU A 374 N PHE A 363 SHEET 5 A 6 ARG A 380 GLY A 388 -1 O GLN A 383 N ARG A 375 SHEET 6 A 6 VAL A 478 ILE A 480 1 O ARG A 479 N LEU A 384 SHEET 1 B 2 GLU A 341 LEU A 345 0 SHEET 2 B 2 THR A 351 ARG A 355 -1 O ILE A 354 N GLU A 342 SHEET 1 C 2 VAL A 451 PRO A 453 0 SHEET 2 C 2 MET A 473 MET A 475 -1 O SER A 474 N GLU A 452 SHEET 1 D 2 GLY A 462 ILE A 463 0 SHEET 2 D 2 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 E 6 PHE B 323 PHE B 325 0 SHEET 2 E 6 PHE B 328 GLY B 335 -1 O PHE B 330 N PHE B 323 SHEET 3 E 6 GLU B 361 VAL B 366 -1 O GLU B 362 N THR B 333 SHEET 4 E 6 ALA B 370 ALA B 377 -1 O LEU B 374 N PHE B 363 SHEET 5 E 6 ARG B 380 GLY B 388 -1 O SER B 387 N THR B 371 SHEET 6 E 6 VAL B 478 ILE B 480 1 O ARG B 479 N VAL B 386 SHEET 1 F 2 VAL B 338 LEU B 345 0 SHEET 2 F 2 THR B 351 GLU B 358 -1 O LEU B 352 N VAL B 344 SHEET 1 G 2 VAL B 451 PRO B 453 0 SHEET 2 G 2 MET B 473 MET B 475 -1 O SER B 474 N GLU B 452 SHEET 1 H 2 GLY B 462 ILE B 463 0 SHEET 2 H 2 PRO B 469 SER B 470 -1 O SER B 470 N GLY B 462 CRYST1 75.969 103.511 112.526 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008887 0.00000