data_4J2S # _entry.id 4J2S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4J2S pdb_00004j2s 10.2210/pdb4j2s/pdb RCSB RCSB077523 ? ? WWPDB D_1000077523 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4ION 'Same protein, different crystal form' unspecified PDB 4IYB 'Same protein, different crystal form, soak with galactose' unspecified PDB 4IZX 'Same protein, cocrystallization with lactose' unspecified # _pdbx_database_status.entry_id 4J2S _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Renko, M.' 1 'Zurga, S.' 2 'Sabotic, J.' 3 'Pohleven, J.' 4 'Kos, J.' 5 'Turk, D.' 6 # _citation.id primary _citation.title 'Macrolepiota procera ricin B-like lectin (MPL) in complex with Di-LacNAc' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Renko, M.' 1 ? primary 'Zurga, S.' 2 ? primary 'Sabotic, J.' 3 ? primary 'Pohleven, J.' 4 ? primary 'Kos, J.' 5 ? primary 'Turk, D.' 6 ? # _cell.length_a 33.737 _cell.length_b 56.458 _cell.length_c 61.279 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4J2S _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4J2S _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ricin B-like lectin' 15802.239 1 ? ? ? ? 2 branched man 'beta-D-galactopyranose-(1-4)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside' 397.375 1 ? ? ? ? 3 non-polymer syn BENZAMIDINE 120.152 1 ? ? ? ? 4 water nat water 18.015 186 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;STQVSSGQTYKITNVKAGTVIDLSGEDNKSIIGYPYHSGKNQQWTFNWTGKAWTLRSASSGSYLGIEGTPADGTRLVAVN DPFEWHIWRDEANENAFRIFVPFTNYNLDLSGYGDTTPGTPVQLWWTWEGLHQTWTIDRP ; _entity_poly.pdbx_seq_one_letter_code_can ;STQVSSGQTYKITNVKAGTVIDLSGEDNKSIIGYPYHSGKNQQWTFNWTGKAWTLRSASSGSYLGIEGTPADGTRLVAVN DPFEWHIWRDEANENAFRIFVPFTNYNLDLSGYGDTTPGTPVQLWWTWEGLHQTWTIDRP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 THR n 1 3 GLN n 1 4 VAL n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 THR n 1 10 TYR n 1 11 LYS n 1 12 ILE n 1 13 THR n 1 14 ASN n 1 15 VAL n 1 16 LYS n 1 17 ALA n 1 18 GLY n 1 19 THR n 1 20 VAL n 1 21 ILE n 1 22 ASP n 1 23 LEU n 1 24 SER n 1 25 GLY n 1 26 GLU n 1 27 ASP n 1 28 ASN n 1 29 LYS n 1 30 SER n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 TYR n 1 35 PRO n 1 36 TYR n 1 37 HIS n 1 38 SER n 1 39 GLY n 1 40 LYS n 1 41 ASN n 1 42 GLN n 1 43 GLN n 1 44 TRP n 1 45 THR n 1 46 PHE n 1 47 ASN n 1 48 TRP n 1 49 THR n 1 50 GLY n 1 51 LYS n 1 52 ALA n 1 53 TRP n 1 54 THR n 1 55 LEU n 1 56 ARG n 1 57 SER n 1 58 ALA n 1 59 SER n 1 60 SER n 1 61 GLY n 1 62 SER n 1 63 TYR n 1 64 LEU n 1 65 GLY n 1 66 ILE n 1 67 GLU n 1 68 GLY n 1 69 THR n 1 70 PRO n 1 71 ALA n 1 72 ASP n 1 73 GLY n 1 74 THR n 1 75 ARG n 1 76 LEU n 1 77 VAL n 1 78 ALA n 1 79 VAL n 1 80 ASN n 1 81 ASP n 1 82 PRO n 1 83 PHE n 1 84 GLU n 1 85 TRP n 1 86 HIS n 1 87 ILE n 1 88 TRP n 1 89 ARG n 1 90 ASP n 1 91 GLU n 1 92 ALA n 1 93 ASN n 1 94 GLU n 1 95 ASN n 1 96 ALA n 1 97 PHE n 1 98 ARG n 1 99 ILE n 1 100 PHE n 1 101 VAL n 1 102 PRO n 1 103 PHE n 1 104 THR n 1 105 ASN n 1 106 TYR n 1 107 ASN n 1 108 LEU n 1 109 ASP n 1 110 LEU n 1 111 SER n 1 112 GLY n 1 113 TYR n 1 114 GLY n 1 115 ASP n 1 116 THR n 1 117 THR n 1 118 PRO n 1 119 GLY n 1 120 THR n 1 121 PRO n 1 122 VAL n 1 123 GLN n 1 124 LEU n 1 125 TRP n 1 126 TRP n 1 127 THR n 1 128 TRP n 1 129 GLU n 1 130 GLY n 1 131 LEU n 1 132 HIS n 1 133 GLN n 1 134 THR n 1 135 TRP n 1 136 THR n 1 137 ILE n 1 138 ASP n 1 139 ARG n 1 140 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'parasol mushroom' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Macrolepiota procera' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 56183 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code F6KMV5_MACPC _struct_ref.pdbx_db_accession F6KMV5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STQVSSGQTYKITNVKAGTVIDLSGEDNKSIIGYPYHSGKNQQWTFNWTGKAWTLRSASSGSYLGIEGTPADGTRLVAVN DPFEWHIWRDEANENAFRIFVPFTNYNLDLSGYGDTTPGTPVQLWWTWEGLHQTWTIDRP ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4J2S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 140 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession F6KMV5 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 141 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 140 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEN non-polymer . BENZAMIDINE ? 'C7 H8 N2' 120.152 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAG D-saccharide n 'methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside' ;BETA-METHYL-N-ACETYL-D-GLUCOSAMINE; methyl 2-acetamido-2-deoxy-beta-D-glucoside; methyl 2-acetamido-2-deoxy-D-glucoside; methyl 2-acetamido-2-deoxy-glucoside ; 'C9 H17 N O6' 235.234 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4J2S _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 33.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M Imidazole pH 8.0, 1.2 M Sodium citrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2012-12-10 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Si111 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.067 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.067 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 # _reflns.entry_id 4J2S _reflns.d_resolution_high 1.400 _reflns.d_resolution_low 20.000 _reflns.number_obs 22820 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_netI_over_sigmaI 7.800 _reflns.pdbx_chi_squared 0.870 _reflns.pdbx_redundancy 10.500 _reflns.percent_possible_obs 95.600 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.number_all 23900 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.400 1.420 ? ? ? 0.473 ? ? 0.515 8.800 ? 892 76.800 1 1 1.420 1.450 ? ? ? 0.423 ? ? 0.550 9.300 ? 933 79.800 2 1 1.450 1.480 ? ? ? 0.430 ? ? 0.547 9.100 ? 1027 88.800 3 1 1.480 1.510 ? ? ? 0.366 ? ? 0.564 9.500 ? 1073 92.500 4 1 1.510 1.540 ? ? ? 0.328 ? ? 0.572 10.100 ? 1143 94.500 5 1 1.540 1.580 ? ? ? 0.317 ? ? 0.575 10.500 ? 1153 98.500 6 1 1.580 1.620 ? ? ? 0.275 ? ? 0.604 10.900 ? 1118 95.600 7 1 1.620 1.660 ? ? ? 0.238 ? ? 0.668 10.600 ? 1170 99.000 8 1 1.660 1.710 ? ? ? 0.203 ? ? 0.699 10.600 ? 1139 96.600 9 1 1.710 1.760 ? ? ? 0.161 ? ? 0.710 10.900 ? 1170 98.000 10 1 1.760 1.830 ? ? ? 0.139 ? ? 0.759 11.000 ? 1146 98.500 11 1 1.830 1.900 ? ? ? 0.117 ? ? 0.822 11.000 ? 1170 97.600 12 1 1.900 1.990 ? ? ? 0.093 ? ? 0.952 10.900 ? 1178 98.100 13 1 1.990 2.090 ? ? ? 0.081 ? ? 1.072 10.900 ? 1164 99.700 14 1 2.090 2.220 ? ? ? 0.075 ? ? 1.160 11.000 ? 1183 98.700 15 1 2.220 2.390 ? ? ? 0.071 ? ? 1.273 10.900 ? 1186 99.000 16 1 2.390 2.630 ? ? ? 0.065 ? ? 1.370 10.900 ? 1200 98.800 17 1 2.630 3.010 ? ? ? 0.047 ? ? 1.146 10.800 ? 1215 99.700 18 1 3.010 3.790 ? ? ? 0.036 ? ? 1.186 10.600 ? 1239 99.600 19 1 3.790 20.000 ? ? ? 0.030 ? ? 1.135 10.000 ? 1321 99.900 20 1 # _refine.entry_id 4J2S _refine.ls_d_res_high 1.4000 _refine.ls_d_res_low 19.2100 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.3100 _refine.ls_number_reflns_obs 22780 _refine.ls_number_reflns_all 23900 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all 0.150 _refine.ls_R_factor_obs 0.1478 _refine.ls_R_factor_R_work 0.1464 _refine.ls_wR_factor_R_work 0.1373 _refine.ls_R_factor_R_free 0.1746 _refine.ls_wR_factor_R_free 0.1651 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1169 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.5242 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9780 _refine.correlation_coeff_Fo_to_Fc_free 0.9710 _refine.overall_SU_R_Cruickshank_DPI 0.0619 _refine.overall_SU_R_free 0.0637 _refine.pdbx_overall_ESU_R 0.0620 _refine.pdbx_overall_ESU_R_Free 0.0640 _refine.overall_SU_ML 0.0410 _refine.overall_SU_B 1.0530 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 4ION _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8884 _refine.B_iso_max 437.060 _refine.B_iso_min 9.060 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 186 _refine_hist.number_atoms_total 1339 _refine_hist.d_res_high 1.4000 _refine_hist.d_res_low 19.2100 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1232 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1060 0.000 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1694 1.523 1.914 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2437 0.673 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 148 8.217 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 59 36.244 24.407 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 175 14.174 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 6.049 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 181 0.965 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1415 0.014 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 315 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 574 1.572 1.403 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 573 1.572 1.402 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 719 2.375 2.102 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.3960 _refine_ls_shell.d_res_low 1.4330 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 74.6000 _refine_ls_shell.number_reflns_R_work 1203 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2840 _refine_ls_shell.R_factor_R_free 0.3650 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 69 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1272 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4J2S _struct.title 'Macrolepiota procera ricin B-like lectin (MPL) in complex with Di-LacNAc' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4J2S _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'beta-trefoil, sugar binding protein, glycans' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 39 ? GLN A 42 ? GLY A 39 GLN A 42 5 ? 4 HELX_P HELX_P2 2 SER A 111 ? ASP A 115 ? SER A 111 ASP A 115 1 ? 5 HELX_P HELX_P3 3 GLY A 130 ? GLN A 133 ? GLY A 130 GLN A 133 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id MAG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id O4 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id GAL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id MAG _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GAL _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.405 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 53 ? SER A 57 ? TRP A 53 SER A 57 A 2 TRP A 44 ? TRP A 48 ? TRP A 44 TRP A 48 A 3 THR A 9 ? ASN A 14 ? THR A 9 ASN A 14 A 4 TRP A 135 ? ASP A 138 ? TRP A 135 ASP A 138 B 1 VAL A 20 ? LEU A 23 ? VAL A 20 LEU A 23 B 2 ILE A 31 ? TYR A 34 ? ILE A 31 TYR A 34 B 3 THR A 120 ? TRP A 126 ? THR A 120 TRP A 126 B 4 TYR A 106 ? LEU A 110 ? TYR A 106 LEU A 110 C 1 TYR A 63 ? ILE A 66 ? TYR A 63 ILE A 66 C 2 LEU A 76 ? VAL A 79 ? LEU A 76 VAL A 79 D 1 HIS A 86 ? ARG A 89 ? HIS A 86 ARG A 89 D 2 PHE A 97 ? PHE A 100 ? PHE A 97 PHE A 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ARG A 56 ? O ARG A 56 N THR A 45 ? N THR A 45 A 2 3 O TRP A 44 ? O TRP A 44 N TYR A 10 ? N TYR A 10 A 3 4 N LYS A 11 ? N LYS A 11 O ASP A 138 ? O ASP A 138 B 1 2 N ASP A 22 ? N ASP A 22 O ILE A 32 ? O ILE A 32 B 2 3 N GLY A 33 ? N GLY A 33 O THR A 120 ? O THR A 120 B 3 4 O GLN A 123 ? O GLN A 123 N ASP A 109 ? N ASP A 109 C 1 2 N TYR A 63 ? N TYR A 63 O VAL A 79 ? O VAL A 79 D 1 2 N HIS A 86 ? N HIS A 86 O PHE A 100 ? O PHE A 100 # _atom_sites.entry_id 4J2S _atom_sites.fract_transf_matrix[1][1] 0.029641 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017712 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016319 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TRP 48 48 48 TRP TRP A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 PHE 103 103 103 PHE PHE A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 TRP 125 125 125 TRP TRP A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 TRP 128 128 128 TRP TRP A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 GLN 133 133 133 GLN GLN A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 TRP 135 135 135 TRP TRP A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 PRO 140 140 140 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BEN 1 203 1 BEN UNL A . D 4 HOH 1 301 11 HOH HOH A . D 4 HOH 2 302 17 HOH HOH A . D 4 HOH 3 303 18 HOH HOH A . D 4 HOH 4 304 19 HOH HOH A . D 4 HOH 5 305 22 HOH HOH A . D 4 HOH 6 306 24 HOH HOH A . D 4 HOH 7 307 26 HOH HOH A . D 4 HOH 8 308 27 HOH HOH A . D 4 HOH 9 309 31 HOH HOH A . D 4 HOH 10 310 32 HOH HOH A . D 4 HOH 11 311 36 HOH HOH A . D 4 HOH 12 312 39 HOH HOH A . D 4 HOH 13 313 40 HOH HOH A . D 4 HOH 14 314 41 HOH HOH A . D 4 HOH 15 315 43 HOH HOH A . D 4 HOH 16 316 44 HOH HOH A . D 4 HOH 17 317 45 HOH HOH A . D 4 HOH 18 318 47 HOH HOH A . D 4 HOH 19 319 49 HOH HOH A . D 4 HOH 20 320 52 HOH HOH A . D 4 HOH 21 321 55 HOH HOH A . D 4 HOH 22 322 57 HOH HOH A . D 4 HOH 23 323 60 HOH HOH A . D 4 HOH 24 324 61 HOH HOH A . D 4 HOH 25 325 65 HOH HOH A . D 4 HOH 26 326 67 HOH HOH A . D 4 HOH 27 327 68 HOH HOH A . D 4 HOH 28 328 70 HOH HOH A . D 4 HOH 29 329 71 HOH HOH A . D 4 HOH 30 330 72 HOH HOH A . D 4 HOH 31 331 73 HOH HOH A . D 4 HOH 32 332 74 HOH HOH A . D 4 HOH 33 333 75 HOH HOH A . D 4 HOH 34 334 76 HOH HOH A . D 4 HOH 35 335 77 HOH HOH A . D 4 HOH 36 336 78 HOH HOH A . D 4 HOH 37 337 79 HOH HOH A . D 4 HOH 38 338 81 HOH HOH A . D 4 HOH 39 339 82 HOH HOH A . D 4 HOH 40 340 83 HOH HOH A . D 4 HOH 41 341 84 HOH HOH A . D 4 HOH 42 342 88 HOH HOH A . D 4 HOH 43 343 90 HOH HOH A . D 4 HOH 44 344 91 HOH HOH A . D 4 HOH 45 345 98 HOH HOH A . D 4 HOH 46 346 99 HOH HOH A . D 4 HOH 47 347 100 HOH HOH A . D 4 HOH 48 348 101 HOH HOH A . D 4 HOH 49 349 102 HOH HOH A . D 4 HOH 50 350 103 HOH HOH A . D 4 HOH 51 351 104 HOH HOH A . D 4 HOH 52 352 105 HOH HOH A . D 4 HOH 53 353 106 HOH HOH A . D 4 HOH 54 354 108 HOH HOH A . D 4 HOH 55 355 109 HOH HOH A . D 4 HOH 56 356 111 HOH HOH A . D 4 HOH 57 357 112 HOH HOH A . D 4 HOH 58 358 113 HOH HOH A . D 4 HOH 59 359 114 HOH HOH A . D 4 HOH 60 360 115 HOH HOH A . D 4 HOH 61 361 116 HOH HOH A . D 4 HOH 62 362 117 HOH HOH A . D 4 HOH 63 363 118 HOH HOH A . D 4 HOH 64 364 119 HOH HOH A . D 4 HOH 65 365 120 HOH HOH A . D 4 HOH 66 366 122 HOH HOH A . D 4 HOH 67 367 123 HOH HOH A . D 4 HOH 68 368 124 HOH HOH A . D 4 HOH 69 369 125 HOH HOH A . D 4 HOH 70 370 127 HOH HOH A . D 4 HOH 71 371 129 HOH HOH A . D 4 HOH 72 372 131 HOH HOH A . D 4 HOH 73 373 132 HOH HOH A . D 4 HOH 74 374 133 HOH HOH A . D 4 HOH 75 375 134 HOH HOH A . D 4 HOH 76 376 138 HOH HOH A . D 4 HOH 77 377 139 HOH HOH A . D 4 HOH 78 378 140 HOH HOH A . D 4 HOH 79 379 141 HOH HOH A . D 4 HOH 80 380 143 HOH HOH A . D 4 HOH 81 381 144 HOH HOH A . D 4 HOH 82 382 145 HOH HOH A . D 4 HOH 83 383 148 HOH HOH A . D 4 HOH 84 384 151 HOH HOH A . D 4 HOH 85 385 152 HOH HOH A . D 4 HOH 86 386 153 HOH HOH A . D 4 HOH 87 387 155 HOH HOH A . D 4 HOH 88 388 156 HOH HOH A . D 4 HOH 89 389 157 HOH HOH A . D 4 HOH 90 390 159 HOH HOH A . D 4 HOH 91 391 160 HOH HOH A . D 4 HOH 92 392 161 HOH HOH A . D 4 HOH 93 393 162 HOH HOH A . D 4 HOH 94 394 163 HOH HOH A . D 4 HOH 95 395 164 HOH HOH A . D 4 HOH 96 396 165 HOH HOH A . D 4 HOH 97 397 168 HOH HOH A . D 4 HOH 98 398 170 HOH HOH A . D 4 HOH 99 399 171 HOH HOH A . D 4 HOH 100 400 173 HOH HOH A . D 4 HOH 101 401 174 HOH HOH A . D 4 HOH 102 402 175 HOH HOH A . D 4 HOH 103 403 176 HOH HOH A . D 4 HOH 104 404 177 HOH HOH A . D 4 HOH 105 405 178 HOH HOH A . D 4 HOH 106 406 179 HOH HOH A . D 4 HOH 107 407 180 HOH HOH A . D 4 HOH 108 408 181 HOH HOH A . D 4 HOH 109 409 183 HOH HOH A . D 4 HOH 110 410 185 HOH HOH A . D 4 HOH 111 411 186 HOH HOH A . D 4 HOH 112 412 188 HOH HOH A . D 4 HOH 113 413 190 HOH HOH A . D 4 HOH 114 414 191 HOH HOH A . D 4 HOH 115 415 192 HOH HOH A . D 4 HOH 116 416 193 HOH HOH A . D 4 HOH 117 417 195 HOH HOH A . D 4 HOH 118 418 196 HOH HOH A . D 4 HOH 119 419 199 HOH HOH A . D 4 HOH 120 420 200 HOH HOH A . D 4 HOH 121 421 201 HOH HOH A . D 4 HOH 122 422 204 HOH HOH A . D 4 HOH 123 423 205 HOH HOH A . D 4 HOH 124 424 207 HOH HOH A . D 4 HOH 125 425 209 HOH HOH A . D 4 HOH 126 426 210 HOH HOH A . D 4 HOH 127 427 211 HOH HOH A . D 4 HOH 128 428 213 HOH HOH A . D 4 HOH 129 429 214 HOH HOH A . D 4 HOH 130 430 218 HOH HOH A . D 4 HOH 131 431 219 HOH HOH A . D 4 HOH 132 432 220 HOH HOH A . D 4 HOH 133 433 221 HOH HOH A . D 4 HOH 134 434 222 HOH HOH A . D 4 HOH 135 435 224 HOH HOH A . D 4 HOH 136 436 225 HOH HOH A . D 4 HOH 137 437 227 HOH HOH A . D 4 HOH 138 438 228 HOH HOH A . D 4 HOH 139 439 230 HOH HOH A . D 4 HOH 140 440 231 HOH HOH A . D 4 HOH 141 441 232 HOH HOH A . D 4 HOH 142 442 233 HOH HOH A . D 4 HOH 143 443 234 HOH HOH A . D 4 HOH 144 444 235 HOH HOH A . D 4 HOH 145 445 236 HOH HOH A . D 4 HOH 146 446 237 HOH HOH A . D 4 HOH 147 447 238 HOH HOH A . D 4 HOH 148 448 239 HOH HOH A . D 4 HOH 149 449 240 HOH HOH A . D 4 HOH 150 450 242 HOH HOH A . D 4 HOH 151 451 245 HOH HOH A . D 4 HOH 152 452 248 HOH HOH A . D 4 HOH 153 453 251 HOH HOH A . D 4 HOH 154 454 252 HOH HOH A . D 4 HOH 155 455 253 HOH HOH A . D 4 HOH 156 456 254 HOH HOH A . D 4 HOH 157 457 255 HOH HOH A . D 4 HOH 158 458 256 HOH HOH A . D 4 HOH 159 459 257 HOH HOH A . D 4 HOH 160 460 259 HOH HOH A . D 4 HOH 161 461 260 HOH HOH A . D 4 HOH 162 462 262 HOH HOH A . D 4 HOH 163 463 263 HOH HOH A . D 4 HOH 164 464 264 HOH HOH A . D 4 HOH 165 465 266 HOH HOH A . D 4 HOH 166 466 267 HOH HOH A . D 4 HOH 167 467 271 HOH HOH A . D 4 HOH 168 468 272 HOH HOH A . D 4 HOH 169 469 274 HOH HOH A . D 4 HOH 170 470 275 HOH HOH A . D 4 HOH 171 471 276 HOH HOH A . D 4 HOH 172 472 278 HOH HOH A . D 4 HOH 173 473 279 HOH HOH A . D 4 HOH 174 474 280 HOH HOH A . D 4 HOH 175 475 281 HOH HOH A . D 4 HOH 176 476 1 HOH HOH A . D 4 HOH 177 477 2 HOH HOH A . D 4 HOH 178 478 4 HOH HOH A . D 4 HOH 179 479 5 HOH HOH A . D 4 HOH 180 480 7 HOH HOH A . D 4 HOH 181 481 11 HOH HOH A . D 4 HOH 182 482 12 HOH HOH A . D 4 HOH 183 483 15 HOH HOH A . D 4 HOH 184 484 16 HOH HOH A . D 4 HOH 185 485 17 HOH HOH A . D 4 HOH 186 486 18 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-20 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 3 0 2021-08-04 4 'Structure model' 3 1 2023-09-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 3 'Structure model' 'Atomic model' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Derived calculations' 8 3 'Structure model' 'Non-polymer description' 9 3 'Structure model' 'Structure summary' 10 4 'Structure model' 'Data collection' 11 4 'Structure model' 'Database references' 12 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' struct_asym 14 2 'Structure model' struct_conn 15 2 'Structure model' struct_site 16 2 'Structure model' struct_site_gen 17 3 'Structure model' atom_site 18 3 'Structure model' chem_comp 19 3 'Structure model' entity 20 3 'Structure model' pdbx_entity_nonpoly 21 3 'Structure model' pdbx_nonpoly_scheme 22 4 'Structure model' chem_comp_atom 23 4 'Structure model' chem_comp_bond 24 4 'Structure model' database_2 25 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_asym_id' 2 2 'Structure model' '_atom_site.auth_seq_id' 3 2 'Structure model' '_atom_site.label_asym_id' 4 2 'Structure model' '_atom_site.label_entity_id' 5 2 'Structure model' '_chem_comp.mon_nstd_flag' 6 2 'Structure model' '_chem_comp.name' 7 2 'Structure model' '_chem_comp.type' 8 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 9 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 11 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_atom_site.B_iso_or_equiv' 16 3 'Structure model' '_atom_site.Cartn_x' 17 3 'Structure model' '_atom_site.Cartn_y' 18 3 'Structure model' '_atom_site.Cartn_z' 19 3 'Structure model' '_atom_site.auth_comp_id' 20 3 'Structure model' '_atom_site.label_comp_id' 21 3 'Structure model' '_chem_comp.formula' 22 3 'Structure model' '_chem_comp.formula_weight' 23 3 'Structure model' '_chem_comp.id' 24 3 'Structure model' '_chem_comp.pdbx_synonyms' 25 3 'Structure model' '_entity.formula_weight' 26 3 'Structure model' '_pdbx_entity_nonpoly.comp_id' 27 3 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 28 3 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 29 4 'Structure model' '_database_2.pdbx_DOI' 30 4 'Structure model' '_database_2.pdbx_database_accession' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.400 _diffrn_reflns.pdbx_d_res_low 20.000 _diffrn_reflns.pdbx_number_obs 22820 _diffrn_reflns.pdbx_Rmerge_I_obs 0.061 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 0.87 _diffrn_reflns.av_sigmaI_over_netI 37.58 _diffrn_reflns.pdbx_redundancy 10.50 _diffrn_reflns.pdbx_percent_possible_obs 95.60 _diffrn_reflns.number 238736 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 3.79 20.00 ? ? 0.030 ? 1.135 10.00 99.90 1 3.01 3.79 ? ? 0.036 ? 1.186 10.60 99.60 1 2.63 3.01 ? ? 0.047 ? 1.146 10.80 99.70 1 2.39 2.63 ? ? 0.065 ? 1.370 10.90 98.80 1 2.22 2.39 ? ? 0.071 ? 1.273 10.90 99.00 1 2.09 2.22 ? ? 0.075 ? 1.160 11.00 98.70 1 1.99 2.09 ? ? 0.081 ? 1.072 10.90 99.70 1 1.90 1.99 ? ? 0.093 ? 0.952 10.90 98.10 1 1.83 1.90 ? ? 0.117 ? 0.822 11.00 97.60 1 1.76 1.83 ? ? 0.139 ? 0.759 11.00 98.50 1 1.71 1.76 ? ? 0.161 ? 0.710 10.90 98.00 1 1.66 1.71 ? ? 0.203 ? 0.699 10.60 96.60 1 1.62 1.66 ? ? 0.238 ? 0.668 10.60 99.00 1 1.58 1.62 ? ? 0.275 ? 0.604 10.90 95.60 1 1.54 1.58 ? ? 0.317 ? 0.575 10.50 98.50 1 1.51 1.54 ? ? 0.328 ? 0.572 10.10 94.50 1 1.48 1.51 ? ? 0.366 ? 0.564 9.50 92.50 1 1.45 1.48 ? ? 0.430 ? 0.547 9.10 88.80 1 1.42 1.45 ? ? 0.423 ? 0.550 9.30 79.80 1 1.40 1.42 ? ? 0.473 ? 0.515 8.80 76.80 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 PHASER . ? ? ? ? phasing ? ? ? 9 MAIN . ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4J2S _pdbx_entry_details.nonpolymer_details ;THE LIGAND DENOTED AS BAM IS LIKELY TO BE BENZAMIDINE, BENZOIC ACID OR BENZAMIDE BASED ON THE SHAPE OF THE ELECTRON DENSITY. THE LIGANDS DENOTED AS MAG AND GAL ARE PART OF THE TETRASACCHARIDE DI-LACNAC, IUPAC CODE GAL B1-4 GLCNAC B1-3 GAL B1-4 GLCNAC. THE ELECTRON DENSITY WAS OBSERVED ONLY FOR THE FIRST TWO SUGAR RINGS, THEREFORE ONLY MAG AND GAL WERE MODELED. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 476 ? ? O A HOH 477 ? ? 2.03 2 1 O A HOH 461 ? ? O A HOH 465 ? ? 2.13 3 1 O A HOH 417 ? ? O A HOH 426 ? ? 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 339 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 346 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_655 _pdbx_validate_symm_contact.dist 2.17 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 29 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -141.84 _pdbx_validate_torsion.psi -46.52 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id SER _pdbx_unobs_or_zero_occ_residues.auth_seq_id 1 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id SER _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BEN C1 C Y N 74 BEN C2 C Y N 75 BEN C3 C Y N 76 BEN C4 C Y N 77 BEN C5 C Y N 78 BEN C6 C Y N 79 BEN C C N N 80 BEN N1 N N N 81 BEN N2 N N N 82 BEN H2 H N N 83 BEN H3 H N N 84 BEN H4 H N N 85 BEN H5 H N N 86 BEN H6 H N N 87 BEN HN1 H N N 88 BEN HN21 H N N 89 BEN HN22 H N N 90 GAL C1 C N R 91 GAL C2 C N R 92 GAL C3 C N S 93 GAL C4 C N R 94 GAL C5 C N R 95 GAL C6 C N N 96 GAL O1 O N N 97 GAL O2 O N N 98 GAL O3 O N N 99 GAL O4 O N N 100 GAL O5 O N N 101 GAL O6 O N N 102 GAL H1 H N N 103 GAL H2 H N N 104 GAL H3 H N N 105 GAL H4 H N N 106 GAL H5 H N N 107 GAL H61 H N N 108 GAL H62 H N N 109 GAL HO1 H N N 110 GAL HO2 H N N 111 GAL HO3 H N N 112 GAL HO4 H N N 113 GAL HO6 H N N 114 GLN N N N N 115 GLN CA C N S 116 GLN C C N N 117 GLN O O N N 118 GLN CB C N N 119 GLN CG C N N 120 GLN CD C N N 121 GLN OE1 O N N 122 GLN NE2 N N N 123 GLN OXT O N N 124 GLN H H N N 125 GLN H2 H N N 126 GLN HA H N N 127 GLN HB2 H N N 128 GLN HB3 H N N 129 GLN HG2 H N N 130 GLN HG3 H N N 131 GLN HE21 H N N 132 GLN HE22 H N N 133 GLN HXT H N N 134 GLU N N N N 135 GLU CA C N S 136 GLU C C N N 137 GLU O O N N 138 GLU CB C N N 139 GLU CG C N N 140 GLU CD C N N 141 GLU OE1 O N N 142 GLU OE2 O N N 143 GLU OXT O N N 144 GLU H H N N 145 GLU H2 H N N 146 GLU HA H N N 147 GLU HB2 H N N 148 GLU HB3 H N N 149 GLU HG2 H N N 150 GLU HG3 H N N 151 GLU HE2 H N N 152 GLU HXT H N N 153 GLY N N N N 154 GLY CA C N N 155 GLY C C N N 156 GLY O O N N 157 GLY OXT O N N 158 GLY H H N N 159 GLY H2 H N N 160 GLY HA2 H N N 161 GLY HA3 H N N 162 GLY HXT H N N 163 HIS N N N N 164 HIS CA C N S 165 HIS C C N N 166 HIS O O N N 167 HIS CB C N N 168 HIS CG C Y N 169 HIS ND1 N Y N 170 HIS CD2 C Y N 171 HIS CE1 C Y N 172 HIS NE2 N Y N 173 HIS OXT O N N 174 HIS H H N N 175 HIS H2 H N N 176 HIS HA H N N 177 HIS HB2 H N N 178 HIS HB3 H N N 179 HIS HD1 H N N 180 HIS HD2 H N N 181 HIS HE1 H N N 182 HIS HE2 H N N 183 HIS HXT H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 ILE N N N N 188 ILE CA C N S 189 ILE C C N N 190 ILE O O N N 191 ILE CB C N S 192 ILE CG1 C N N 193 ILE CG2 C N N 194 ILE CD1 C N N 195 ILE OXT O N N 196 ILE H H N N 197 ILE H2 H N N 198 ILE HA H N N 199 ILE HB H N N 200 ILE HG12 H N N 201 ILE HG13 H N N 202 ILE HG21 H N N 203 ILE HG22 H N N 204 ILE HG23 H N N 205 ILE HD11 H N N 206 ILE HD12 H N N 207 ILE HD13 H N N 208 ILE HXT H N N 209 LEU N N N N 210 LEU CA C N S 211 LEU C C N N 212 LEU O O N N 213 LEU CB C N N 214 LEU CG C N N 215 LEU CD1 C N N 216 LEU CD2 C N N 217 LEU OXT O N N 218 LEU H H N N 219 LEU H2 H N N 220 LEU HA H N N 221 LEU HB2 H N N 222 LEU HB3 H N N 223 LEU HG H N N 224 LEU HD11 H N N 225 LEU HD12 H N N 226 LEU HD13 H N N 227 LEU HD21 H N N 228 LEU HD22 H N N 229 LEU HD23 H N N 230 LEU HXT H N N 231 LYS N N N N 232 LYS CA C N S 233 LYS C C N N 234 LYS O O N N 235 LYS CB C N N 236 LYS CG C N N 237 LYS CD C N N 238 LYS CE C N N 239 LYS NZ N N N 240 LYS OXT O N N 241 LYS H H N N 242 LYS H2 H N N 243 LYS HA H N N 244 LYS HB2 H N N 245 LYS HB3 H N N 246 LYS HG2 H N N 247 LYS HG3 H N N 248 LYS HD2 H N N 249 LYS HD3 H N N 250 LYS HE2 H N N 251 LYS HE3 H N N 252 LYS HZ1 H N N 253 LYS HZ2 H N N 254 LYS HZ3 H N N 255 LYS HXT H N N 256 MAG C1 C N R 257 MAG C2 C N R 258 MAG C3 C N R 259 MAG C4 C N S 260 MAG C5 C N R 261 MAG C6 C N N 262 MAG C7 C N N 263 MAG C8 C N N 264 MAG N2 N N N 265 MAG O1 O N N 266 MAG O3 O N N 267 MAG O4 O N N 268 MAG O5 O N N 269 MAG O6 O N N 270 MAG O7 O N N 271 MAG CM C N N 272 MAG H1 H N N 273 MAG H2 H N N 274 MAG H3 H N N 275 MAG H4 H N N 276 MAG H5 H N N 277 MAG H61 H N N 278 MAG H62 H N N 279 MAG H81 H N N 280 MAG H82 H N N 281 MAG H83 H N N 282 MAG HN2 H N N 283 MAG HO3 H N N 284 MAG HO4 H N N 285 MAG HO6 H N N 286 MAG HM1 H N N 287 MAG HM2 H N N 288 MAG HM3 H N N 289 PHE N N N N 290 PHE CA C N S 291 PHE C C N N 292 PHE O O N N 293 PHE CB C N N 294 PHE CG C Y N 295 PHE CD1 C Y N 296 PHE CD2 C Y N 297 PHE CE1 C Y N 298 PHE CE2 C Y N 299 PHE CZ C Y N 300 PHE OXT O N N 301 PHE H H N N 302 PHE H2 H N N 303 PHE HA H N N 304 PHE HB2 H N N 305 PHE HB3 H N N 306 PHE HD1 H N N 307 PHE HD2 H N N 308 PHE HE1 H N N 309 PHE HE2 H N N 310 PHE HZ H N N 311 PHE HXT H N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 THR N N N N 344 THR CA C N S 345 THR C C N N 346 THR O O N N 347 THR CB C N R 348 THR OG1 O N N 349 THR CG2 C N N 350 THR OXT O N N 351 THR H H N N 352 THR H2 H N N 353 THR HA H N N 354 THR HB H N N 355 THR HG1 H N N 356 THR HG21 H N N 357 THR HG22 H N N 358 THR HG23 H N N 359 THR HXT H N N 360 TRP N N N N 361 TRP CA C N S 362 TRP C C N N 363 TRP O O N N 364 TRP CB C N N 365 TRP CG C Y N 366 TRP CD1 C Y N 367 TRP CD2 C Y N 368 TRP NE1 N Y N 369 TRP CE2 C Y N 370 TRP CE3 C Y N 371 TRP CZ2 C Y N 372 TRP CZ3 C Y N 373 TRP CH2 C Y N 374 TRP OXT O N N 375 TRP H H N N 376 TRP H2 H N N 377 TRP HA H N N 378 TRP HB2 H N N 379 TRP HB3 H N N 380 TRP HD1 H N N 381 TRP HE1 H N N 382 TRP HE3 H N N 383 TRP HZ2 H N N 384 TRP HZ3 H N N 385 TRP HH2 H N N 386 TRP HXT H N N 387 TYR N N N N 388 TYR CA C N S 389 TYR C C N N 390 TYR O O N N 391 TYR CB C N N 392 TYR CG C Y N 393 TYR CD1 C Y N 394 TYR CD2 C Y N 395 TYR CE1 C Y N 396 TYR CE2 C Y N 397 TYR CZ C Y N 398 TYR OH O N N 399 TYR OXT O N N 400 TYR H H N N 401 TYR H2 H N N 402 TYR HA H N N 403 TYR HB2 H N N 404 TYR HB3 H N N 405 TYR HD1 H N N 406 TYR HD2 H N N 407 TYR HE1 H N N 408 TYR HE2 H N N 409 TYR HH H N N 410 TYR HXT H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BEN C1 C2 doub Y N 70 BEN C1 C6 sing Y N 71 BEN C1 C sing N N 72 BEN C2 C3 sing Y N 73 BEN C2 H2 sing N N 74 BEN C3 C4 doub Y N 75 BEN C3 H3 sing N N 76 BEN C4 C5 sing Y N 77 BEN C4 H4 sing N N 78 BEN C5 C6 doub Y N 79 BEN C5 H5 sing N N 80 BEN C6 H6 sing N N 81 BEN C N1 doub N E 82 BEN C N2 sing N N 83 BEN N1 HN1 sing N N 84 BEN N2 HN21 sing N N 85 BEN N2 HN22 sing N N 86 GAL C1 C2 sing N N 87 GAL C1 O1 sing N N 88 GAL C1 O5 sing N N 89 GAL C1 H1 sing N N 90 GAL C2 C3 sing N N 91 GAL C2 O2 sing N N 92 GAL C2 H2 sing N N 93 GAL C3 C4 sing N N 94 GAL C3 O3 sing N N 95 GAL C3 H3 sing N N 96 GAL C4 C5 sing N N 97 GAL C4 O4 sing N N 98 GAL C4 H4 sing N N 99 GAL C5 C6 sing N N 100 GAL C5 O5 sing N N 101 GAL C5 H5 sing N N 102 GAL C6 O6 sing N N 103 GAL C6 H61 sing N N 104 GAL C6 H62 sing N N 105 GAL O1 HO1 sing N N 106 GAL O2 HO2 sing N N 107 GAL O3 HO3 sing N N 108 GAL O4 HO4 sing N N 109 GAL O6 HO6 sing N N 110 GLN N CA sing N N 111 GLN N H sing N N 112 GLN N H2 sing N N 113 GLN CA C sing N N 114 GLN CA CB sing N N 115 GLN CA HA sing N N 116 GLN C O doub N N 117 GLN C OXT sing N N 118 GLN CB CG sing N N 119 GLN CB HB2 sing N N 120 GLN CB HB3 sing N N 121 GLN CG CD sing N N 122 GLN CG HG2 sing N N 123 GLN CG HG3 sing N N 124 GLN CD OE1 doub N N 125 GLN CD NE2 sing N N 126 GLN NE2 HE21 sing N N 127 GLN NE2 HE22 sing N N 128 GLN OXT HXT sing N N 129 GLU N CA sing N N 130 GLU N H sing N N 131 GLU N H2 sing N N 132 GLU CA C sing N N 133 GLU CA CB sing N N 134 GLU CA HA sing N N 135 GLU C O doub N N 136 GLU C OXT sing N N 137 GLU CB CG sing N N 138 GLU CB HB2 sing N N 139 GLU CB HB3 sing N N 140 GLU CG CD sing N N 141 GLU CG HG2 sing N N 142 GLU CG HG3 sing N N 143 GLU CD OE1 doub N N 144 GLU CD OE2 sing N N 145 GLU OE2 HE2 sing N N 146 GLU OXT HXT sing N N 147 GLY N CA sing N N 148 GLY N H sing N N 149 GLY N H2 sing N N 150 GLY CA C sing N N 151 GLY CA HA2 sing N N 152 GLY CA HA3 sing N N 153 GLY C O doub N N 154 GLY C OXT sing N N 155 GLY OXT HXT sing N N 156 HIS N CA sing N N 157 HIS N H sing N N 158 HIS N H2 sing N N 159 HIS CA C sing N N 160 HIS CA CB sing N N 161 HIS CA HA sing N N 162 HIS C O doub N N 163 HIS C OXT sing N N 164 HIS CB CG sing N N 165 HIS CB HB2 sing N N 166 HIS CB HB3 sing N N 167 HIS CG ND1 sing Y N 168 HIS CG CD2 doub Y N 169 HIS ND1 CE1 doub Y N 170 HIS ND1 HD1 sing N N 171 HIS CD2 NE2 sing Y N 172 HIS CD2 HD2 sing N N 173 HIS CE1 NE2 sing Y N 174 HIS CE1 HE1 sing N N 175 HIS NE2 HE2 sing N N 176 HIS OXT HXT sing N N 177 HOH O H1 sing N N 178 HOH O H2 sing N N 179 ILE N CA sing N N 180 ILE N H sing N N 181 ILE N H2 sing N N 182 ILE CA C sing N N 183 ILE CA CB sing N N 184 ILE CA HA sing N N 185 ILE C O doub N N 186 ILE C OXT sing N N 187 ILE CB CG1 sing N N 188 ILE CB CG2 sing N N 189 ILE CB HB sing N N 190 ILE CG1 CD1 sing N N 191 ILE CG1 HG12 sing N N 192 ILE CG1 HG13 sing N N 193 ILE CG2 HG21 sing N N 194 ILE CG2 HG22 sing N N 195 ILE CG2 HG23 sing N N 196 ILE CD1 HD11 sing N N 197 ILE CD1 HD12 sing N N 198 ILE CD1 HD13 sing N N 199 ILE OXT HXT sing N N 200 LEU N CA sing N N 201 LEU N H sing N N 202 LEU N H2 sing N N 203 LEU CA C sing N N 204 LEU CA CB sing N N 205 LEU CA HA sing N N 206 LEU C O doub N N 207 LEU C OXT sing N N 208 LEU CB CG sing N N 209 LEU CB HB2 sing N N 210 LEU CB HB3 sing N N 211 LEU CG CD1 sing N N 212 LEU CG CD2 sing N N 213 LEU CG HG sing N N 214 LEU CD1 HD11 sing N N 215 LEU CD1 HD12 sing N N 216 LEU CD1 HD13 sing N N 217 LEU CD2 HD21 sing N N 218 LEU CD2 HD22 sing N N 219 LEU CD2 HD23 sing N N 220 LEU OXT HXT sing N N 221 LYS N CA sing N N 222 LYS N H sing N N 223 LYS N H2 sing N N 224 LYS CA C sing N N 225 LYS CA CB sing N N 226 LYS CA HA sing N N 227 LYS C O doub N N 228 LYS C OXT sing N N 229 LYS CB CG sing N N 230 LYS CB HB2 sing N N 231 LYS CB HB3 sing N N 232 LYS CG CD sing N N 233 LYS CG HG2 sing N N 234 LYS CG HG3 sing N N 235 LYS CD CE sing N N 236 LYS CD HD2 sing N N 237 LYS CD HD3 sing N N 238 LYS CE NZ sing N N 239 LYS CE HE2 sing N N 240 LYS CE HE3 sing N N 241 LYS NZ HZ1 sing N N 242 LYS NZ HZ2 sing N N 243 LYS NZ HZ3 sing N N 244 LYS OXT HXT sing N N 245 MAG C1 C2 sing N N 246 MAG C1 O1 sing N N 247 MAG C1 O5 sing N N 248 MAG C1 H1 sing N N 249 MAG C2 C3 sing N N 250 MAG C2 N2 sing N N 251 MAG C2 H2 sing N N 252 MAG C3 C4 sing N N 253 MAG C3 O3 sing N N 254 MAG C3 H3 sing N N 255 MAG C4 C5 sing N N 256 MAG C4 O4 sing N N 257 MAG C4 H4 sing N N 258 MAG C5 C6 sing N N 259 MAG C5 O5 sing N N 260 MAG C5 H5 sing N N 261 MAG C6 O6 sing N N 262 MAG C6 H61 sing N N 263 MAG C6 H62 sing N N 264 MAG C7 C8 sing N N 265 MAG C7 N2 sing N N 266 MAG C7 O7 doub N N 267 MAG C8 H81 sing N N 268 MAG C8 H82 sing N N 269 MAG C8 H83 sing N N 270 MAG N2 HN2 sing N N 271 MAG O1 CM sing N N 272 MAG O3 HO3 sing N N 273 MAG O4 HO4 sing N N 274 MAG O6 HO6 sing N N 275 MAG CM HM1 sing N N 276 MAG CM HM2 sing N N 277 MAG CM HM3 sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAG 1 B MAG 1 ? C2 282 n B 2 GAL 2 B GAL 2 ? C1 282 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcpNAc[1Me]b' MAG 'COMMON NAME' GMML 1.0 1-methyl-N-acetyl-b-D-glucopyranose MAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-methyl-N-acetyl-D-glucosamine # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGalpb1-4DGlcpNAc[1Me]b1-OME' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5_1*OC_2*NCC/3=O][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][methyl]{[(1+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 MAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAG 1 n 2 GAL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 BENZAMIDINE BEN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ION _pdbx_initial_refinement_model.details ? #