HEADER HYDROLASE/HYDROLASE INHIBITOR 05-FEB-13 4J2T TITLE INHIBITOR-BOUND CA2+ ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERCA1A; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: FAST TWITCH SKELETAL MUSCLE KEYWDS P-TYPE ATPASE, CALCIUM TRANSPORT, THAPSIGARGIN ANALOG, SARCO(ENDO) KEYWDS 2 PLASMIC RETICULUM, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.S.PAULSEN,J.VILLADSEN,E.TENORI,H.LIU,M.A.LIE,D.F.BONDE,M.BUBLITZ, AUTHOR 2 C.OLESEN,H.E.AUTZEN,I.DACH,P.SEHGAL,J.V.MOLLER,B.SCHIOTT,P.NISSEN, AUTHOR 3 S.B.CHRISTENSEN REVDAT 3 20-SEP-23 4J2T 1 REMARK LINK REVDAT 2 24-JAN-18 4J2T 1 AUTHOR REMARK REVDAT 1 19-JUN-13 4J2T 0 JRNL AUTH E.S.PAULSEN,J.VILLADSEN,E.TENORI,H.LIU,D.F.BONDE,M.A.LIE, JRNL AUTH 2 M.BUBLITZ,C.OLESEN,H.E.AUTZEN,I.DACH,P.SEHGAL,P.NISSEN, JRNL AUTH 3 J.V.MOLLER,B.SCHIOTT,S.B.CHRISTENSEN JRNL TITL WATER-MEDIATED INTERACTIONS INFLUENCE THE BINDING OF JRNL TITL 2 THAPSIGARGIN TO SARCO/ENDOPLASMIC RETICULUM CALCIUM JRNL TITL 3 ADENOSINETRIPHOSPHATASE. JRNL REF J.MED.CHEM. V. 56 3609 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23574308 JRNL DOI 10.1021/JM4001083 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7160 - 7.2894 0.99 2261 153 0.2050 0.2202 REMARK 3 2 7.2894 - 5.8015 1.00 2128 144 0.2512 0.2890 REMARK 3 3 5.8015 - 5.0727 1.00 2053 140 0.2438 0.3147 REMARK 3 4 5.0727 - 4.6110 1.00 2082 141 0.2354 0.2410 REMARK 3 5 4.6110 - 4.2816 1.00 2037 139 0.2408 0.2501 REMARK 3 6 4.2816 - 4.0299 1.00 2016 138 0.2660 0.3080 REMARK 3 7 4.0299 - 3.8286 1.00 2033 137 0.2934 0.3198 REMARK 3 8 3.8286 - 3.6623 1.00 1987 135 0.3009 0.3289 REMARK 3 9 3.6623 - 3.5215 1.00 1988 136 0.3197 0.3641 REMARK 3 10 3.5215 - 3.4002 0.99 1976 135 0.3204 0.3136 REMARK 3 11 3.4002 - 3.2940 1.00 2007 136 0.3186 0.3390 REMARK 3 12 3.2940 - 3.2000 1.00 1971 134 0.3481 0.3451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7889 REMARK 3 ANGLE : 1.543 10700 REMARK 3 CHIRALITY : 0.125 1254 REMARK 3 PLANARITY : 0.007 1358 REMARK 3 DIHEDRAL : 15.446 2924 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 1:39 OR CHAIN A AND RESID 123:229 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2779 29.4307 -17.1736 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.3171 REMARK 3 T33: 0.7263 T12: 0.1739 REMARK 3 T13: 0.3137 T23: -0.4035 REMARK 3 L TENSOR REMARK 3 L11: 0.2892 L22: 0.2414 REMARK 3 L33: 0.2809 L12: -0.1218 REMARK 3 L13: -0.0400 L23: 0.0974 REMARK 3 S TENSOR REMARK 3 S11: 0.3444 S12: -0.6191 S13: -0.3487 REMARK 3 S21: -0.0016 S22: -0.0810 S23: -0.1429 REMARK 3 S31: -0.4898 S32: 0.3224 S33: 0.1428 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 346:356 OR CHAIN A AND RESID REMARK 3 603:741 REMARK 3 ORIGIN FOR THE GROUP (A): -23.4172 -2.7959 -25.5649 REMARK 3 T TENSOR REMARK 3 T11: 0.7522 T22: 0.4126 REMARK 3 T33: 0.5458 T12: 0.0159 REMARK 3 T13: 0.1392 T23: -0.0980 REMARK 3 L TENSOR REMARK 3 L11: 0.0579 L22: 0.1298 REMARK 3 L33: 0.4051 L12: -0.0641 REMARK 3 L13: -0.1083 L23: 0.0247 REMARK 3 S TENSOR REMARK 3 S11: 0.3166 S12: 0.0266 S13: 0.0094 REMARK 3 S21: -0.2005 S22: -0.3175 S23: 0.0850 REMARK 3 S31: 0.3983 S32: 0.2479 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 361:601 REMARK 3 ORIGIN FOR THE GROUP (A): -44.3213 -2.2628 -0.3560 REMARK 3 T TENSOR REMARK 3 T11: 0.9132 T22: 0.3301 REMARK 3 T33: 0.7047 T12: -0.1114 REMARK 3 T13: 0.2179 T23: -0.1736 REMARK 3 L TENSOR REMARK 3 L11: 0.3370 L22: 0.3210 REMARK 3 L33: 0.4027 L12: -0.5435 REMARK 3 L13: 0.0953 L23: -0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.3809 S12: 0.0407 S13: 0.1924 REMARK 3 S21: 0.2802 S22: -0.0397 S23: 0.0048 REMARK 3 S31: 0.1122 S32: -0.1288 S33: -0.3144 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 50:107 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3811 13.8328 -72.1870 REMARK 3 T TENSOR REMARK 3 T11: 1.1852 T22: 0.8280 REMARK 3 T33: 0.4002 T12: -0.0696 REMARK 3 T13: -0.1288 T23: -0.1032 REMARK 3 L TENSOR REMARK 3 L11: 0.0381 L22: 0.0726 REMARK 3 L33: 0.0113 L12: 0.0793 REMARK 3 L13: -0.0065 L23: -0.0451 REMARK 3 S TENSOR REMARK 3 S11: -0.4815 S12: -0.2909 S13: -0.2080 REMARK 3 S21: 0.1803 S22: 0.4180 S23: -0.3963 REMARK 3 S31: -0.0780 S32: -0.1700 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 274:329 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5767 3.5777 -73.2038 REMARK 3 T TENSOR REMARK 3 T11: 1.1305 T22: 0.7475 REMARK 3 T33: 0.4758 T12: 0.0385 REMARK 3 T13: 0.0178 T23: 0.1168 REMARK 3 L TENSOR REMARK 3 L11: -0.0525 L22: -0.0827 REMARK 3 L33: 0.0790 L12: 0.1137 REMARK 3 L13: 0.0924 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: 0.1841 S13: -0.0570 REMARK 3 S21: -0.1414 S22: -0.2030 S23: 0.3978 REMARK 3 S31: -0.3876 S32: 0.0570 S33: -0.0092 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 745:994 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4767 -10.8272 -73.4697 REMARK 3 T TENSOR REMARK 3 T11: 1.2376 T22: 0.7303 REMARK 3 T33: 0.4549 T12: -0.0026 REMARK 3 T13: 0.1499 T23: -0.1603 REMARK 3 L TENSOR REMARK 3 L11: 0.0289 L22: 0.2537 REMARK 3 L33: 0.2917 L12: -0.1978 REMARK 3 L13: -0.2838 L23: 0.2369 REMARK 3 S TENSOR REMARK 3 S11: -0.4454 S12: 0.3174 S13: -0.1004 REMARK 3 S21: -0.0019 S22: 0.1094 S23: 0.2044 REMARK 3 S31: 0.7679 S32: 0.1875 S33: -0.1361 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31414 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.810 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 15.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.11 REMARK 200 R MERGE FOR SHELL (I) : 0.03700 REMARK 200 R SYM FOR SHELL (I) : 0.50200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MAGNESIUM CHLORIDE, 23% W/V REMARK 280 PEG6000, 3% TERT-BUTANOL, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 293.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.45000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.90000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.45000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 440.70000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.90000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 440.70000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 293.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -154.64 -150.85 REMARK 500 PRO A 42 132.05 -36.32 REMARK 500 THR A 84 136.62 -170.10 REMARK 500 TRP A 107 -3.85 -59.42 REMARK 500 SER A 178 -68.60 -23.62 REMARK 500 ASN A 275 45.77 -89.26 REMARK 500 HIS A 284 131.74 -178.69 REMARK 500 SER A 287 40.94 80.77 REMARK 500 LYS A 329 35.11 -93.95 REMARK 500 ASN A 330 10.03 57.31 REMARK 500 VAL A 339 -17.50 -48.25 REMARK 500 LYS A 352 -81.64 -83.15 REMARK 500 THR A 353 -87.70 -24.48 REMARK 500 GLN A 360 78.91 -106.39 REMARK 500 SER A 362 135.84 -170.12 REMARK 500 PRO A 391 50.01 -65.68 REMARK 500 ASP A 399 -0.77 60.20 REMARK 500 ASN A 453 93.88 -34.43 REMARK 500 THR A 457 99.86 -37.65 REMARK 500 ASN A 461 42.18 -81.97 REMARK 500 ALA A 470 -73.80 -44.40 REMARK 500 ARG A 489 -9.52 -58.98 REMARK 500 SER A 493 161.58 176.33 REMARK 500 ALA A 501 -124.73 80.67 REMARK 500 SER A 503 175.12 -55.92 REMARK 500 SER A 504 -7.30 85.14 REMARK 500 MET A 537 107.00 -49.25 REMARK 500 ARG A 556 -17.07 -43.58 REMARK 500 LEU A 578 29.84 -74.08 REMARK 500 ASP A 579 43.86 -146.82 REMARK 500 ASP A 580 87.24 -154.38 REMARK 500 SER A 581 -28.14 -36.48 REMARK 500 GLU A 588 50.64 -100.12 REMARK 500 LYS A 605 -72.62 -48.76 REMARK 500 GLU A 606 19.43 -62.04 REMARK 500 ASP A 650 38.08 -99.21 REMARK 500 LEU A 663 -27.70 -32.86 REMARK 500 ARG A 672 -34.02 -130.12 REMARK 500 CYS A 674 -24.63 -148.88 REMARK 500 ARG A 678 71.40 41.85 REMARK 500 ASP A 738 0.37 54.85 REMARK 500 GLU A 785 105.33 -47.33 REMARK 500 PRO A 820 176.00 -56.36 REMARK 500 TYR A 858 -9.87 91.34 REMARK 500 THR A 866 119.65 -24.47 REMARK 500 GLN A 869 98.15 -39.01 REMARK 500 CYS A 876 -51.88 -137.74 REMARK 500 GLU A 889 -10.80 -154.17 REMARK 500 MET A 925 78.63 -100.85 REMARK 500 TYR A 949 -65.06 -103.99 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PTY A 1002 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1003 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 712 O REMARK 620 2 ALA A 714 O 85.6 REMARK 620 3 GLU A 732 OE2 140.1 126.4 REMARK 620 4 GLU A 732 OE1 147.3 85.0 41.7 REMARK 620 5 HOH A1101 O 79.6 91.6 117.6 132.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1HT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PTY A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NAL RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE DTB REMARK 900 RELATED ID: 3NAN RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH A THAPSIGARGIN REMARK 900 DERIVATIVE BOC-(PHI)TG REMARK 900 RELATED ID: 3NAM RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN REMARK 900 DERIVATIVE DOTG REMARK 900 RELATED ID: 2C8K RELATED DB: PDB REMARK 900 SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THAPSIGARGIN REMARK 900 RELATED ID: 3N5K RELATED DB: PDB REMARK 900 STRUCTURE OF THE (SR)CA2+-ATPASE E2-ALF4- FORM DBREF 4J2T A 1 994 UNP B6CAM1 B6CAM1_RABIT 1 994 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET 1HT A1001 51 HET PTY A1002 24 HET K A1003 1 HETNAM 1HT (3S,3AR,4S,6S,6AR,7S,8S,9BS)-6-(ACETYLOXY)-3A,4- HETNAM 2 1HT BIS(BUTANOYLOXY)-3-HYDROXY-3,6,9-TRIMETHYL-8-{[(2E)-2- HETNAM 3 1HT METHYLBUT-2-ENOYL]OXY}-2-OXO-2,3,3A,4,5,6,6A,7,8,9B- HETNAM 4 1HT DECAHYDROAZULENO[4,5-B]FURAN-7-YL OCTANOATE HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETNAM K POTASSIUM ION FORMUL 2 1HT C38 H56 O13 FORMUL 3 PTY C40 H80 N O8 P FORMUL 4 K K 1+ FORMUL 5 HOH *(H2 O) HELIX 1 1 SER A 8 PHE A 16 1 9 HELIX 2 2 THR A 25 GLY A 37 1 13 HELIX 3 3 SER A 48 PHE A 57 1 10 HELIX 4 4 ASP A 59 ALA A 76 1 18 HELIX 5 5 TRP A 77 GLU A 79 5 3 HELIX 6 6 GLU A 80 THR A 84 5 5 HELIX 7 7 ILE A 85 ALA A 87 5 3 HELIX 8 8 PHE A 88 ARG A 110 1 23 HELIX 9 9 ASN A 114 LYS A 120 1 7 HELIX 10 10 GLU A 121 GLU A 123 5 3 HELIX 11 11 ARG A 143 ILE A 145 5 3 HELIX 12 12 GLN A 177 GLY A 182 1 6 HELIX 13 13 VAL A 200 LYS A 204 5 5 HELIX 14 14 THR A 226 SER A 229 5 4 HELIX 15 15 THR A 230 THR A 242 1 13 HELIX 16 16 THR A 247 ASN A 275 1 29 HELIX 17 17 ILE A 276 ASP A 281 5 6 HELIX 18 18 SER A 287 ILE A 307 1 21 HELIX 19 19 GLY A 310 LYS A 329 1 20 HELIX 20 20 PRO A 337 CYS A 344 1 8 HELIX 21 21 LYS A 352 THR A 357 1 6 HELIX 22 22 ARG A 403 GLN A 406 5 4 HELIX 23 23 PHE A 407 ASN A 421 1 15 HELIX 24 24 THR A 441 MET A 452 1 12 HELIX 25 25 SER A 463 ALA A 468 1 6 HELIX 26 26 ASN A 469 MET A 479 1 11 HELIX 27 27 ALA A 517 ASP A 523 1 7 HELIX 28 28 THR A 538 GLY A 555 1 18 HELIX 29 29 LYS A 572 MET A 576 5 5 HELIX 30 30 ASP A 580 GLU A 588 1 9 HELIX 31 31 ARG A 604 GLU A 606 5 3 HELIX 32 32 VAL A 607 ALA A 617 1 11 HELIX 33 33 ASN A 628 ILE A 639 1 12 HELIX 34 34 VAL A 648 ASP A 650 5 3 HELIX 35 35 GLY A 655 ASP A 660 1 6 HELIX 36 36 PRO A 662 ARG A 671 1 10 HELIX 37 37 GLU A 680 SER A 693 1 14 HELIX 38 38 GLY A 704 ASN A 706 5 3 HELIX 39 39 ASP A 707 LYS A 712 1 6 HELIX 40 40 THR A 724 SER A 731 1 8 HELIX 41 41 ASN A 739 LEU A 781 1 43 HELIX 42 42 ILE A 788 VAL A 798 1 11 HELIX 43 43 ASP A 800 LEU A 807 1 8 HELIX 44 44 GLY A 808 ASN A 810 5 3 HELIX 45 45 ASP A 815 ARG A 819 5 5 HELIX 46 46 SER A 830 MET A 857 1 28 HELIX 47 47 LEU A 870 GLN A 875 5 6 HELIX 48 48 GLU A 889 GLU A 892 5 4 HELIX 49 49 ALA A 893 ASN A 914 1 22 HELIX 50 50 SER A 915 SER A 917 5 3 HELIX 51 51 PRO A 926 VAL A 929 5 4 HELIX 52 52 ASN A 930 VAL A 950 1 21 HELIX 53 53 ASP A 951 LYS A 958 1 8 HELIX 54 54 ASP A 963 LEU A 975 1 13 HELIX 55 55 LEU A 975 TYR A 991 1 17 SHEET 1 A 6 GLN A 138 LYS A 141 0 SHEET 2 A 6 MET A 126 TYR A 130 -1 N VAL A 129 O GLN A 138 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O ILE A 150 N TYR A 130 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 SER A 167 -1 N ARG A 164 O ILE A 222 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ASN A 213 N ASP A 176 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N ALA A 719 O LEU A 735 SHEET 4 C 8 THR A 698 GLY A 702 1 N MET A 700 O ILE A 718 SHEET 5 C 8 VAL A 347 ASP A 351 1 N VAL A 347 O ALA A 699 SHEET 6 C 8 ARG A 620 THR A 625 1 O ILE A 622 N ILE A 348 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 D 9 LYS A 400 ILE A 402 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N VAL A 395 O ILE A 402 SHEET 3 D 9 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 5 D 9 LEU A 591 LEU A 600 -1 O LEU A 600 N SER A 362 SHEET 6 D 9 ARG A 560 ARG A 567 -1 N THR A 566 O THR A 592 SHEET 7 D 9 LYS A 511 GLY A 516 -1 N MET A 512 O ARG A 567 SHEET 8 D 9 SER A 493 SER A 499 -1 N CYS A 498 O LYS A 511 SHEET 9 D 9 LYS A 480 SER A 488 -1 N LYS A 480 O SER A 499 SHEET 1 E 7 LYS A 400 ILE A 402 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N VAL A 395 O ILE A 402 SHEET 3 E 7 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N ASP A 370 O SER A 378 SHEET 5 E 7 LEU A 591 LEU A 600 -1 O LEU A 600 N SER A 362 SHEET 6 E 7 CYS A 525 VAL A 530 1 N ARG A 529 O PHE A 593 SHEET 7 E 7 THR A 533 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 F 2 LEU A 425 ASN A 428 0 SHEET 2 F 2 VAL A 433 LYS A 436 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.02 LINK O LYS A 712 K K A1003 1555 1555 3.37 LINK O ALA A 714 K K A1003 1555 1555 3.13 LINK OE2 GLU A 732 K K A1003 1555 1555 3.05 LINK OE1 GLU A 732 K K A1003 1555 1555 3.19 LINK K K A1003 O HOH A1101 1555 1555 2.79 SITE 1 AC1 13 GLU A 255 PHE A 256 GLN A 259 LEU A 260 SITE 2 AC1 13 VAL A 263 ILE A 267 ALA A 306 ILE A 765 SITE 3 AC1 13 VAL A 769 LEU A 828 ILE A 829 PHE A 834 SITE 4 AC1 13 TYR A 837 SITE 1 AC2 10 GLN A 56 ALA A 100 ASN A 101 VAL A 104 SITE 2 AC2 10 GLY A 105 GLN A 108 GLU A 309 PRO A 312 SITE 3 AC2 10 ALA A 313 THR A 316 SITE 1 AC3 5 LEU A 711 LYS A 712 ALA A 714 GLU A 732 SITE 2 AC3 5 HOH A1101 CRYST1 70.900 70.900 587.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001702 0.00000