HEADER TRANSPORT PROTEIN 05-FEB-13 4J3H TITLE RING CYCLE FOR DILATING AND CONSTRICTING THE NUCLEAR PORE: STRUCTURE TITLE 2 OF A NUP54 HOMO-TETRAMER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP54; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 453-494; COMPND 5 SYNONYM: 54 KDA NUCLEOPORIN, NUCLEOPORIN NUP54, NUCLEOPORIN P54; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: NUP54; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FG-REPEAT, MID-PLANE RING, GATING, NUP, HELICAL BUNDLE, FOUR HELIX KEYWDS 2 BUNDLE, TRANSPORT CHANNEL, NUCLEOPORIN, TRANSPORT, NUCLEO- KEYWDS 3 CYTOPLASMIC TRANSPORT, MRNP EXPORT, NUP58, NUP62, KARYOPHERIN, KEYWDS 4 NUP45, NUCLEAR ENVELOPE, NUCLEAR PORE COMPLEX, NUCLEUS, NPC, KEYWDS 5 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.R.SOLMAZ,G.BLOBEL,I.MELCAK REVDAT 2 17-APR-13 4J3H 1 JRNL TITLE REVDAT 1 10-APR-13 4J3H 0 JRNL AUTH S.R.SOLMAZ,G.BLOBEL,I.MELCAK JRNL TITL RING CYCLE FOR DILATING AND CONSTRICTING THE NUCLEAR PORE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 5858 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23479651 JRNL DOI 10.1073/PNAS.1302655110 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6697 - 4.2009 1.00 1235 139 0.2061 0.2287 REMARK 3 2 4.2009 - 3.3354 1.00 1262 139 0.1684 0.1865 REMARK 3 3 3.3354 - 2.9140 1.00 1220 142 0.2071 0.2534 REMARK 3 4 2.9140 - 2.6477 1.00 1252 142 0.2161 0.2362 REMARK 3 5 2.6477 - 2.4580 1.00 1237 134 0.1929 0.2755 REMARK 3 6 2.4580 - 2.3131 1.00 1237 136 0.1731 0.2140 REMARK 3 7 2.3131 - 2.1973 1.00 1247 138 0.1748 0.2476 REMARK 3 8 2.1973 - 2.1017 1.00 1233 142 0.1825 0.1913 REMARK 3 9 2.1017 - 2.0208 1.00 1261 134 0.1827 0.1945 REMARK 3 10 2.0208 - 1.9510 1.00 1221 134 0.1742 0.2245 REMARK 3 11 1.9510 - 1.8900 1.00 1246 139 0.1780 0.1757 REMARK 3 12 1.8900 - 1.8360 1.00 1252 138 0.1822 0.2481 REMARK 3 13 1.8360 - 1.7877 1.00 1221 131 0.1848 0.1902 REMARK 3 14 1.7877 - 1.7441 1.00 1245 140 0.1812 0.2281 REMARK 3 15 1.7441 - 1.7044 1.00 1221 139 0.1913 0.2120 REMARK 3 16 1.7044 - 1.6681 1.00 1257 144 0.2042 0.1961 REMARK 3 17 1.6681 - 1.6348 1.00 1235 135 0.2060 0.2349 REMARK 3 18 1.6348 - 1.6039 1.00 1242 133 0.2087 0.2098 REMARK 3 19 1.6039 - 1.5753 1.00 1236 139 0.2164 0.2796 REMARK 3 20 1.5753 - 1.5486 0.99 1232 139 0.2163 0.2382 REMARK 3 21 1.5486 - 1.5236 1.00 1193 147 0.2418 0.2658 REMARK 3 22 1.5236 - 1.5002 0.99 1264 140 0.2564 0.2620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 41.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17640 REMARK 3 B22 (A**2) : 0.17640 REMARK 3 B33 (A**2) : -0.35290 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 701 REMARK 3 ANGLE : 1.240 937 REMARK 3 CHIRALITY : 0.076 101 REMARK 3 PLANARITY : 0.005 123 REMARK 3 DIHEDRAL : 13.461 286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and resseq 453:466 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0690 39.4392 130.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.1258 REMARK 3 T33: 0.1708 T12: 0.0019 REMARK 3 T13: 0.0329 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8671 L22: 0.3838 REMARK 3 L33: 0.7172 L12: -0.0887 REMARK 3 L13: -0.1913 L23: 0.5542 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: -0.0657 S13: -0.0345 REMARK 3 S21: -0.1545 S22: 0.0215 S23: 0.3942 REMARK 3 S31: -0.1204 S32: -0.0901 S33: -0.0032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and resseq 467:478 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0815 29.4968 121.5124 REMARK 3 T TENSOR REMARK 3 T11: 0.1587 T22: 0.1884 REMARK 3 T33: 0.2415 T12: -0.0233 REMARK 3 T13: 0.0894 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 5.7128 L22: 5.5150 REMARK 3 L33: 6.7713 L12: -3.1529 REMARK 3 L13: -5.4379 L23: 2.7350 REMARK 3 S TENSOR REMARK 3 S11: -0.4254 S12: -0.3378 S13: -0.5689 REMARK 3 S21: 0.3440 S22: 0.4785 S23: -0.7921 REMARK 3 S31: 0.3932 S32: 0.7101 S33: 0.0175 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and resseq 479:489 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2747 24.2793 107.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.2143 REMARK 3 T33: 0.2327 T12: -0.0193 REMARK 3 T13: 0.0614 T23: -0.0834 REMARK 3 L TENSOR REMARK 3 L11: 6.5139 L22: 2.9006 REMARK 3 L33: 7.6088 L12: -1.7496 REMARK 3 L13: -4.3370 L23: 1.7805 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.6599 S13: 0.4184 REMARK 3 S21: 0.2035 S22: 0.3797 S23: -0.1677 REMARK 3 S31: -0.2475 S32: 0.5067 S33: -0.2241 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and resseq 490:494 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0357 26.3222 98.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.1908 T22: 0.1108 REMARK 3 T33: 0.3459 T12: -0.0087 REMARK 3 T13: 0.0867 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 7.1495 L22: 5.2560 REMARK 3 L33: 1.3165 L12: 5.9241 REMARK 3 L13: 0.9846 L23: 0.2020 REMARK 3 S TENSOR REMARK 3 S11: 0.2548 S12: -0.3824 S13: 0.8196 REMARK 3 S21: 0.4255 S22: -0.2077 S23: 0.1046 REMARK 3 S31: -0.3379 S32: -0.2601 S33: 0.0739 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'B' and resseq 453:459 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2699 15.6654 97.7067 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.1933 REMARK 3 T33: 0.1601 T12: 0.0345 REMARK 3 T13: -0.0325 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 3.4322 L22: 4.0221 REMARK 3 L33: 1.3007 L12: 2.7062 REMARK 3 L13: 0.2986 L23: 1.7432 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.1356 S13: -0.2777 REMARK 3 S21: -0.6164 S22: 0.0052 S23: 0.3239 REMARK 3 S31: -0.0138 S32: 0.0579 S33: 0.0375 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'B' and resseq 460:472 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9262 16.9324 113.1248 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1891 REMARK 3 T33: 0.0999 T12: 0.0393 REMARK 3 T13: -0.0063 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 7.1275 L22: 4.5267 REMARK 3 L33: 5.7591 L12: -3.2376 REMARK 3 L13: -4.7194 L23: 3.4432 REMARK 3 S TENSOR REMARK 3 S11: -0.3411 S12: -0.8104 S13: -0.4043 REMARK 3 S21: 0.4464 S22: 0.2750 S23: 0.0313 REMARK 3 S31: 0.5688 S32: 0.5623 S33: 0.0342 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'B' and resseq 473:482 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2700 24.9233 121.5887 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.1951 REMARK 3 T33: 0.0790 T12: -0.0025 REMARK 3 T13: 0.0077 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 3.0781 L22: 1.5680 REMARK 3 L33: 8.2547 L12: 0.5703 REMARK 3 L13: -4.2075 L23: 0.9900 REMARK 3 S TENSOR REMARK 3 S11: -0.0570 S12: 0.1921 S13: 0.0074 REMARK 3 S21: -0.0759 S22: 0.1269 S23: -0.0044 REMARK 3 S31: -0.1613 S32: -0.3777 S33: -0.0257 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'B' and resseq 483:490 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2364 32.3900 126.1671 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.3426 REMARK 3 T33: 0.3383 T12: 0.0263 REMARK 3 T13: -0.0325 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 9.4295 L22: 4.0966 REMARK 3 L33: 4.3298 L12: -5.0228 REMARK 3 L13: -6.3713 L23: 3.4820 REMARK 3 S TENSOR REMARK 3 S11: 0.2221 S12: 0.8718 S13: -0.1382 REMARK 3 S21: -0.6010 S22: -0.0363 S23: 1.3166 REMARK 3 S31: -0.3746 S32: -1.2332 S33: -0.1990 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30293 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 24.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 38.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 22.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25200 REMARK 200 FOR SHELL : 13.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-26% PEG 400, 0.1 M NA HEPES BUFFER REMARK 280 PH 7.1 - 8.1, 0.2 M CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.13667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.27333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.20500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 165.34167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.06833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.13667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 132.27333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 165.34167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.20500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.06833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -20.66000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 35.78417 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 231.47833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 449 REMARK 465 SER A 450 REMARK 465 HIS A 451 REMARK 465 MSE A 452 REMARK 465 GLY B 449 REMARK 465 SER B 450 REMARK 465 HIS B 451 REMARK 465 MSE B 452 REMARK 465 ILE B 491 REMARK 465 LYS B 492 REMARK 465 LEU B 493 REMARK 465 VAL B 494 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 453 CB CG CD OE1 OE2 REMARK 480 GLU A 454 CD OE1 OE2 REMARK 480 GLU B 453 CB CG CD OE1 OE2 REMARK 480 ASP B 490 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 623 O HOH B 633 2.08 REMARK 500 OE1 GLN B 473 O HOH B 601 2.15 REMARK 500 O HOH B 635 O HOH B 636 2.17 REMARK 500 OD2 ASP A 487 O HOH A 612 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 473 O HOH B 601 12566 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 454 -20.41 -140.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 483 O REMARK 620 2 HOH B 604 O 86.7 REMARK 620 3 ASP B 487 OD2 89.5 163.4 REMARK 620 4 ASP B 486 OD1 96.1 83.2 81.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 490 OD1 REMARK 620 2 ASP A 487 O 83.5 REMARK 620 3 ASP A 487 OD1 154.1 71.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 605 O REMARK 620 2 HOH A 639 O 101.6 REMARK 620 3 ASP A 459 OD1 77.6 93.2 REMARK 620 4 ASP A 459 OD2 127.3 85.8 49.8 REMARK 620 5 HOH A 601 O 65.7 91.6 143.2 167.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T98 RELATED DB: PDB REMARK 900 RELATED ID: 3T97 RELATED DB: PDB REMARK 900 RELATED ID: 2OSZ RELATED DB: PDB DBREF 4J3H A 453 494 UNP P70582 NUP54_RAT 453 494 DBREF 4J3H B 453 494 UNP P70582 NUP54_RAT 453 494 SEQADV 4J3H GLY A 449 UNP P70582 EXPRESSION TAG SEQADV 4J3H SER A 450 UNP P70582 EXPRESSION TAG SEQADV 4J3H HIS A 451 UNP P70582 EXPRESSION TAG SEQADV 4J3H MSE A 452 UNP P70582 EXPRESSION TAG SEQADV 4J3H MSE A 458 UNP P70582 ILE 458 ENGINEERED MUTATION SEQADV 4J3H MSE A 481 UNP P70582 ILE 481 ENGINEERED MUTATION SEQADV 4J3H GLY B 449 UNP P70582 EXPRESSION TAG SEQADV 4J3H SER B 450 UNP P70582 EXPRESSION TAG SEQADV 4J3H HIS B 451 UNP P70582 EXPRESSION TAG SEQADV 4J3H MSE B 452 UNP P70582 EXPRESSION TAG SEQADV 4J3H MSE B 458 UNP P70582 ILE 458 ENGINEERED MUTATION SEQADV 4J3H MSE B 481 UNP P70582 ILE 481 ENGINEERED MUTATION SEQRES 1 A 46 GLY SER HIS MSE GLU GLU LYS TYR TYR MSE ASP ALA ASP SEQRES 2 A 46 LEU LEU ARG GLU ILE LYS GLN HIS LEU LYS GLN GLN GLN SEQRES 3 A 46 GLU GLY LEU SER HIS LEU MSE SER ILE ILE LYS ASP ASP SEQRES 4 A 46 LEU GLU ASP ILE LYS LEU VAL SEQRES 1 B 46 GLY SER HIS MSE GLU GLU LYS TYR TYR MSE ASP ALA ASP SEQRES 2 B 46 LEU LEU ARG GLU ILE LYS GLN HIS LEU LYS GLN GLN GLN SEQRES 3 B 46 GLU GLY LEU SER HIS LEU MSE SER ILE ILE LYS ASP ASP SEQRES 4 B 46 LEU GLU ASP ILE LYS LEU VAL MODRES 4J3H MSE A 458 MET SELENOMETHIONINE MODRES 4J3H MSE A 481 MET SELENOMETHIONINE MODRES 4J3H MSE B 458 MET SELENOMETHIONINE MODRES 4J3H MSE B 481 MET SELENOMETHIONINE HET MSE A 458 8 HET MSE A 481 8 HET MSE B 458 8 HET MSE B 481 8 HET CA A 501 1 HET CA A 502 1 HET CA B 501 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *80(H2 O) HELIX 1 1 ASP A 459 GLU A 489 1 31 HELIX 2 2 ASP B 459 ASP B 490 1 32 LINK C TYR A 457 N MSE A 458 1555 1555 1.33 LINK C MSE A 458 N ASP A 459 1555 1555 1.33 LINK C LEU A 480 N MSE A 481 1555 1555 1.33 LINK C MSE A 481 N SER A 482 1555 1555 1.33 LINK C TYR B 457 N MSE B 458 1555 1555 1.33 LINK C MSE B 458 N ASP B 459 1555 1555 1.32 LINK C LEU B 480 N MSE B 481 1555 1555 1.34 LINK C MSE B 481 N SER B 482 1555 1555 1.32 LINK O ILE B 483 CA CA B 501 1555 1555 2.25 LINK OD1 ASP A 490 CA CA A 501 1555 1555 2.31 LINK CA CA B 501 O HOH B 604 1555 1555 2.37 LINK OD2 ASP B 487 CA CA B 501 1555 1555 2.37 LINK O ASP A 487 CA CA A 501 1555 1555 2.39 LINK OD1 ASP A 487 CA CA A 501 1555 1555 2.41 LINK OD1 ASP B 486 CA CA B 501 1555 1555 2.43 LINK CA CA A 502 O HOH A 605 1555 1555 2.50 LINK CA CA A 502 O HOH A 639 1555 1555 2.53 LINK OD1 ASP A 459 CA CA A 502 1555 1555 2.55 LINK OD2 ASP A 459 CA CA A 502 1555 1555 2.58 LINK CA CA A 502 O HOH A 601 1555 1555 2.60 SITE 1 AC1 5 ASP A 461 ASP A 487 ASP A 490 HOH A 632 SITE 2 AC1 5 HOH A 634 SITE 1 AC2 6 ASP A 459 ASP A 486 GLU A 489 HOH A 601 SITE 2 AC2 6 HOH A 605 HOH A 639 SITE 1 AC3 6 LEU A 488 ASP A 490 ILE B 483 ASP B 486 SITE 2 AC3 6 ASP B 487 HOH B 604 CRYST1 41.320 41.320 198.410 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024201 0.013973 0.000000 0.00000 SCALE2 0.000000 0.027945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005040 0.00000