HEADER HYDROLASE 06-FEB-13 4J3S TITLE CRYSTAL STRUCTURE OF BARLEY LIMIT DEXTRINASE SOAKED WITH 300MM TITLE 2 MALTOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIMIT DEXTRINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-905; COMPND 5 EC: 3.2.1.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_COMMON: BARLEY; SOURCE 4 ORGANISM_TAXID: 4513; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GH13 HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SIM,M.S.WINDAHL,M.S.MOELLER,A.HENRIKSEN REVDAT 4 08-NOV-23 4J3S 1 HETSYN REVDAT 3 29-JUL-20 4J3S 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 14-OCT-15 4J3S 1 JRNL REVDAT 1 12-FEB-14 4J3S 0 JRNL AUTH M.S.MOELLER,M.S.WINDAHL,L.SIM,M.BJSTRUP,M.ABOU HACHEM, JRNL AUTH 2 O.HINDSGAUL,M.PALCIC,B.SVENSSON,A.HENRIKSEN JRNL TITL OLIGOSACCHARIDE AND SUBSTRATE BINDING IN THE STARCH JRNL TITL 2 DEBRANCHING ENZYME BARLEY LIMIT DEXTRINASE JRNL REF J.MOL.BIOL. V. 427 1263 2015 JRNL REFN ISSN 0022-2836 JRNL PMID 25562209 JRNL DOI 10.1016/J.JMB.2014.12.019 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 77407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3871 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 285 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6983 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6419 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9527 ; 1.133 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14755 ; 1.000 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 871 ; 5.613 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;36.458 ;23.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1073 ;12.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;15.113 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1077 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7892 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1622 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 13402 ; 2.863 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 165 ;27.381 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 13603 ; 6.489 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4J3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77622 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2Y4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.3M NAI, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.63000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.63000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 915 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1166 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1433 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 3 REMARK 465 MET A 4 REMARK 465 GLU A 23 REMARK 465 LEU A 24 REMARK 465 GLU A 25 REMARK 465 ALA A 26 REMARK 465 GLN A 27 REMARK 465 SER A 40 REMARK 465 LEU A 41 REMARK 465 SER A 42 REMARK 465 PRO A 43 REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 GLY A 46 REMARK 465 GLY A 47 REMARK 465 ILE A 48 REMARK 465 GLY A 103 REMARK 465 ALA A 104 REMARK 465 ASP A 105 REMARK 465 GLY A 106 REMARK 465 LYS A 107 REMARK 465 HIS A 108 REMARK 465 TYR A 573 REMARK 465 GLN A 574 REMARK 465 GLY A 575 REMARK 465 ASN A 576 REMARK 465 GLU A 577 REMARK 465 ALA A 578 REMARK 465 CYS A 885 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 157 CG OD1 OD2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 ASP A 274 CB CG OD1 OD2 REMARK 470 GLN A 285 CB CG CD OE1 NE2 REMARK 470 GLU A 810 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1535 O HOH A 1538 1.93 REMARK 500 O HOH A 1535 O HOH A 1536 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1185 O HOH A 1185 2555 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 145 67.16 -151.23 REMARK 500 TYR A 357 47.00 -81.43 REMARK 500 VAL A 416 -62.15 -121.53 REMARK 500 ALA A 439 -57.08 160.83 REMARK 500 ALA A 515 -138.49 56.00 REMARK 500 PHE A 566 -54.54 70.21 REMARK 500 ASN A 643 -171.71 68.10 REMARK 500 ASP A 698 80.64 -155.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 918 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 348 O REMARK 620 2 ASP A 351 OD1 84.2 REMARK 620 3 TYR A 353 O 174.9 91.1 REMARK 620 4 ASN A 701 OD1 89.0 146.2 96.0 REMARK 620 5 HOH A1031 O 95.1 140.6 87.2 72.9 REMARK 620 6 HOH A1041 O 94.4 74.7 86.3 72.8 144.2 REMARK 620 7 HOH A1048 O 84.9 71.3 91.7 141.1 69.4 145.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J3T RELATED DB: PDB REMARK 900 RELATED ID: 4J3U RELATED DB: PDB REMARK 900 RELATED ID: 4J3V RELATED DB: PDB REMARK 900 RELATED ID: 4J3W RELATED DB: PDB REMARK 900 RELATED ID: 4J3X RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE RESIDUES REPRESENT NATURAL VARIANTS. DBREF 4J3S A 2 885 UNP Q9FYY0 Q9FYY0_HORVU 22 905 SEQADV 4J3S MET A -19 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S GLY A -18 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S SER A -17 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S SER A -16 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A -15 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A -14 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A -13 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A -12 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A -11 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A -10 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S SER A -9 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S SER A -8 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S GLY A -7 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S LEU A -6 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S VAL A -5 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S PRO A -4 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S ARG A -3 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S GLY A -2 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S SER A -1 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S HIS A 0 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S MET A 1 UNP Q9FYY0 EXPRESSION TAG SEQADV 4J3S ARG A 82 UNP Q9FYY0 LYS 102 SEE REMARK 999 SEQADV 4J3S ALA A 213 UNP Q9FYY0 THR 233 SEE REMARK 999 SEQADV 4J3S ARG A 395 UNP Q9FYY0 CYS 415 SEE REMARK 999 SEQRES 1 A 905 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 905 LEU VAL PRO ARG GLY SER HIS MET ALA PHE MET PRO ASP SEQRES 3 A 905 ALA ARG ALA TYR TRP VAL THR SER ASP LEU ILE ALA TRP SEQRES 4 A 905 ASN VAL GLY GLU LEU GLU ALA GLN SER VAL CYS LEU TYR SEQRES 5 A 905 ALA SER ARG ALA ALA ALA MET SER LEU SER PRO SER ASN SEQRES 6 A 905 GLY GLY ILE GLN GLY TYR ASP SER LYS VAL GLU LEU GLN SEQRES 7 A 905 PRO GLU SER ALA GLY LEU PRO GLU THR VAL THR GLN LYS SEQRES 8 A 905 PHE PRO PHE ILE SER SER TYR ARG ALA PHE ARG VAL PRO SEQRES 9 A 905 SER SER VAL ASP VAL ALA SER LEU VAL LYS CYS GLN LEU SEQRES 10 A 905 VAL VAL ALA SER PHE GLY ALA ASP GLY LYS HIS VAL ASP SEQRES 11 A 905 VAL THR GLY LEU GLN LEU PRO GLY VAL LEU ASP ASP MET SEQRES 12 A 905 PHE ALA TYR THR GLY PRO LEU GLY ALA VAL PHE SER GLU SEQRES 13 A 905 ASP SER VAL SER LEU HIS LEU TRP ALA PRO THR ALA GLN SEQRES 14 A 905 GLY VAL SER VAL CYS PHE PHE ASP GLY PRO ALA GLY PRO SEQRES 15 A 905 ALA LEU GLU THR VAL GLN LEU LYS GLU SER ASN GLY VAL SEQRES 16 A 905 TRP SER VAL THR GLY PRO ARG GLU TRP GLU ASN ARG TYR SEQRES 17 A 905 TYR LEU TYR GLU VAL ASP VAL TYR HIS PRO THR LYS ALA SEQRES 18 A 905 GLN VAL LEU LYS CYS LEU ALA GLY ASP PRO TYR ALA ARG SEQRES 19 A 905 SER LEU SER ALA ASN GLY ALA ARG THR TRP LEU VAL ASP SEQRES 20 A 905 ILE ASN ASN GLU THR LEU LYS PRO ALA SER TRP ASP GLU SEQRES 21 A 905 LEU ALA ASP GLU LYS PRO LYS LEU ASP SER PHE SER ASP SEQRES 22 A 905 ILE THR ILE TYR GLU LEU HIS ILE ARG ASP PHE SER ALA SEQRES 23 A 905 HIS ASP GLY THR VAL ASP SER ASP SER ARG GLY GLY PHE SEQRES 24 A 905 ARG ALA PHE ALA TYR GLN ALA SER ALA GLY MET GLU HIS SEQRES 25 A 905 LEU ARG LYS LEU SER ASP ALA GLY LEU THR HIS VAL HIS SEQRES 26 A 905 LEU LEU PRO SER PHE HIS PHE ALA GLY VAL ASP ASP ILE SEQRES 27 A 905 LYS SER ASN TRP LYS PHE VAL ASP GLU CYS GLU LEU ALA SEQRES 28 A 905 THR PHE PRO PRO GLY SER ASP MET GLN GLN ALA ALA VAL SEQRES 29 A 905 VAL ALA ILE GLN GLU GLU ASP PRO TYR ASN TRP GLY TYR SEQRES 30 A 905 ASN PRO VAL LEU TRP GLY VAL PRO LYS GLY SER TYR ALA SEQRES 31 A 905 SER ASP PRO ASP GLY PRO SER ARG ILE ILE GLU TYR ARG SEQRES 32 A 905 GLN MET VAL GLN ALA LEU ASN ARG ILE GLY LEU ARG VAL SEQRES 33 A 905 VAL MET ASP VAL VAL TYR ASN HIS LEU ASP SER SER GLY SEQRES 34 A 905 PRO CYS GLY ILE SER SER VAL LEU ASP LYS ILE VAL PRO SEQRES 35 A 905 GLY TYR TYR VAL ARG ARG ASP THR ASN GLY GLN ILE GLU SEQRES 36 A 905 ASN SER ALA ALA MET ASN ASN THR ALA SER GLU HIS PHE SEQRES 37 A 905 MET VAL ASP ARG LEU ILE VAL ASP ASP LEU LEU ASN TRP SEQRES 38 A 905 ALA VAL ASN TYR LYS VAL ASP GLY PHE ARG PHE ASP LEU SEQRES 39 A 905 MET GLY HIS ILE MET LYS ARG THR MET MET ARG ALA LYS SEQRES 40 A 905 SER ALA LEU GLN SER LEU THR THR ASP ALA HIS GLY VAL SEQRES 41 A 905 ASP GLY SER LYS ILE TYR LEU TYR GLY GLU GLY TRP ASP SEQRES 42 A 905 PHE ALA GLU VAL ALA ARG ASN GLN ARG GLY ILE ASN GLY SEQRES 43 A 905 SER GLN LEU ASN MET SER GLY THR GLY ILE GLY SER PHE SEQRES 44 A 905 ASN ASP ARG ILE ARG ASP ALA ILE ASN GLY GLY ASN PRO SEQRES 45 A 905 PHE GLY ASN PRO LEU GLN GLN GLY PHE ASN THR GLY LEU SEQRES 46 A 905 PHE LEU GLU PRO ASN GLY PHE TYR GLN GLY ASN GLU ALA SEQRES 47 A 905 ASP THR ARG ARG SER LEU ALA THR TYR ALA ASP GLN ILE SEQRES 48 A 905 GLN ILE GLY LEU ALA GLY ASN LEU ARG ASP TYR VAL LEU SEQRES 49 A 905 ILE SER HIS THR GLY GLU ALA LYS LYS GLY SER GLU ILE SEQRES 50 A 905 HIS THR PHE ASP GLY LEU PRO VAL GLY TYR THR ALA SER SEQRES 51 A 905 PRO ILE GLU THR ILE ASN TYR VAL SER ALA HIS ASP ASN SEQRES 52 A 905 GLU THR LEU PHE ASP VAL ILE SER VAL LYS THR PRO MET SEQRES 53 A 905 ILE LEU SER VAL ASP GLU ARG CYS ARG ILE ASN HIS LEU SEQRES 54 A 905 ALA SER SER MET MET ALA LEU SER GLN GLY ILE PRO PHE SEQRES 55 A 905 PHE HIS ALA GLY ASP GLU ILE LEU ARG SER LYS SER ILE SEQRES 56 A 905 ASP ARG ASP SER TYR ASN SER GLY ASP TRP PHE ASN LYS SEQRES 57 A 905 LEU ASP PHE THR TYR GLU THR ASN ASN TRP GLY VAL GLY SEQRES 58 A 905 LEU PRO PRO SER GLU LYS ASN GLU ASP ASN TRP PRO LEU SEQRES 59 A 905 MET LYS PRO ARG LEU GLU ASN PRO SER PHE LYS PRO ALA SEQRES 60 A 905 LYS GLY HIS ILE LEU ALA ALA LEU ASP SER PHE VAL ASP SEQRES 61 A 905 ILE LEU LYS ILE ARG TYR SER SER PRO LEU PHE ARG LEU SEQRES 62 A 905 SER THR ALA ASN ASP ILE LYS GLN ARG VAL ARG PHE HIS SEQRES 63 A 905 ASN THR GLY PRO SER LEU VAL PRO GLY VAL ILE VAL MET SEQRES 64 A 905 GLY ILE GLU ASP ALA ARG GLY GLU SER PRO GLU MET ALA SEQRES 65 A 905 GLN LEU ASP THR ASN PHE SER TYR VAL VAL THR VAL PHE SEQRES 66 A 905 ASN VAL CYS PRO HIS GLU VAL SER MET ASP ILE PRO ALA SEQRES 67 A 905 LEU ALA SER MET GLY PHE GLU LEU HIS PRO VAL GLN VAL SEQRES 68 A 905 ASN SER SER ASP THR LEU VAL ARG LYS SER ALA TYR GLU SEQRES 69 A 905 ALA ALA THR GLY ARG PHE THR VAL PRO GLY ARG THR VAL SEQRES 70 A 905 SER VAL PHE VAL GLU PRO ARG CYS HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET GLC C 1 12 HET GLC C 2 11 HET GLC C 3 11 HET GLC D 1 12 HET GLC D 2 11 HET GLC D 3 11 HET GLC D 4 11 HET IOD A 912 1 HET IOD A 913 1 HET IOD A 914 1 HET IOD A 915 2 HET IOD A 916 2 HET IOD A 917 2 HET CA A 918 1 HET GOL A 919 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM IOD IODIDE ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 11(C6 H12 O6) FORMUL 5 IOD 6(I 1-) FORMUL 11 CA CA 2+ FORMUL 12 GOL C3 H8 O3 FORMUL 13 HOH *538(H2 O) HELIX 1 1 PRO A 65 PHE A 72 1 8 HELIX 2 2 PRO A 73 SER A 76 5 4 HELIX 3 3 ASP A 88 VAL A 93 1 6 HELIX 4 4 LEU A 116 ALA A 125 1 10 HELIX 5 5 GLU A 183 GLU A 185 5 3 HELIX 6 6 SER A 217 ALA A 221 5 5 HELIX 7 7 ASN A 230 LYS A 234 5 5 HELIX 8 8 SER A 237 ASP A 239 5 3 HELIX 9 9 GLU A 240 LYS A 245 1 6 HELIX 10 10 SER A 250 ILE A 254 5 5 HELIX 11 11 HIS A 260 ALA A 266 1 7 HELIX 12 12 ASP A 272 ARG A 276 5 5 HELIX 13 13 GLY A 278 TYR A 284 5 7 HELIX 14 14 SER A 287 GLY A 300 1 14 HELIX 15 15 ILE A 318 TRP A 322 5 5 HELIX 16 16 ASP A 326 ALA A 331 1 6 HELIX 17 17 ASP A 338 ILE A 347 1 10 HELIX 18 18 GLY A 367 ALA A 370 5 4 HELIX 19 19 PRO A 376 ILE A 392 1 17 HELIX 20 20 VAL A 416 VAL A 421 1 6 HELIX 21 21 HIS A 447 TYR A 465 1 19 HELIX 22 22 LEU A 474 ILE A 478 5 5 HELIX 23 23 MET A 479 SER A 492 1 14 HELIX 24 24 THR A 494 GLY A 499 1 6 HELIX 25 25 ASP A 501 ILE A 505 5 5 HELIX 26 26 PHE A 514 GLN A 521 5 8 HELIX 27 27 ASP A 541 GLY A 549 1 9 HELIX 28 28 THR A 580 ALA A 596 1 17 HELIX 29 29 SER A 630 ILE A 632 5 3 HELIX 30 30 THR A 645 THR A 654 1 10 HELIX 31 31 SER A 659 LEU A 676 1 18 HELIX 32 32 GLY A 686 LEU A 690 5 5 HELIX 33 33 SER A 702 LYS A 708 1 7 HELIX 34 34 PRO A 724 GLU A 729 1 6 HELIX 35 35 ASN A 731 ASN A 741 1 11 HELIX 36 36 PRO A 742 LYS A 745 5 4 HELIX 37 37 ALA A 747 TYR A 766 1 20 HELIX 38 38 SER A 767 LEU A 773 5 7 HELIX 39 39 THR A 775 ARG A 782 1 8 HELIX 40 40 PRO A 837 ALA A 840 5 4 HELIX 41 41 HIS A 847 ASN A 852 1 6 HELIX 42 42 LEU A 857 SER A 861 5 5 SHEET 1 A 8 ASP A 110 THR A 112 0 SHEET 2 A 8 GLN A 96 SER A 101 -1 N SER A 101 O ASP A 110 SHEET 3 A 8 VAL A 29 SER A 34 -1 N TYR A 32 O VAL A 98 SHEET 4 A 8 SER A 53 PRO A 59 -1 O VAL A 55 N LEU A 31 SHEET 5 A 8 ARG A 79 ARG A 82 -1 O ARG A 82 N GLN A 58 SHEET 6 A 8 LEU A 16 TRP A 19 -1 N ILE A 17 O PHE A 81 SHEET 7 A 8 ALA A 9 THR A 13 -1 N TYR A 10 O ALA A 18 SHEET 8 A 8 LEU A 114 GLN A 115 1 O GLN A 115 N ALA A 9 SHEET 1 B 4 GLY A 131 PHE A 134 0 SHEET 2 B 4 SER A 138 TRP A 144 -1 O HIS A 142 N GLY A 131 SHEET 3 B 4 VAL A 175 PRO A 181 -1 O GLY A 180 N VAL A 139 SHEET 4 B 4 LYS A 170 SER A 172 -1 N LYS A 170 O SER A 177 SHEET 1 C 4 ALA A 163 GLN A 168 0 SHEET 2 C 4 ALA A 148 PHE A 156 -1 N PHE A 155 O GLU A 165 SHEET 3 C 4 TYR A 188 TYR A 196 -1 O LEU A 190 N CYS A 154 SHEET 4 C 4 VAL A 203 ALA A 208 -1 O ALA A 208 N TYR A 191 SHEET 1 D 4 ALA A 163 GLN A 168 0 SHEET 2 D 4 ALA A 148 PHE A 156 -1 N PHE A 155 O GLU A 165 SHEET 3 D 4 TYR A 188 TYR A 196 -1 O LEU A 190 N CYS A 154 SHEET 4 D 4 THR A 223 TRP A 224 -1 O THR A 223 N TYR A 189 SHEET 1 E 9 ILE A 256 LEU A 259 0 SHEET 2 E 9 HIS A 303 LEU A 306 1 O HIS A 305 N LEU A 259 SHEET 3 E 9 ARG A 395 VAL A 400 1 O VAL A 397 N VAL A 304 SHEET 4 E 9 GLY A 469 PHE A 472 1 O ARG A 471 N VAL A 400 SHEET 5 E 9 TYR A 506 GLY A 509 1 O TYR A 508 N PHE A 472 SHEET 6 E 9 GLY A 537 ASN A 540 1 O GLY A 537 N LEU A 507 SHEET 7 E 9 THR A 634 ASN A 636 1 O ILE A 635 N ASN A 540 SHEET 8 E 9 ILE A 680 HIS A 684 1 O ILE A 680 N THR A 634 SHEET 9 E 9 ILE A 256 LEU A 259 1 N ILE A 256 O PHE A 683 SHEET 1 F 2 PHE A 310 PHE A 312 0 SHEET 2 F 2 PRO A 359 PRO A 365 -1 O VAL A 360 N HIS A 311 SHEET 1 G 2 VAL A 603 ILE A 605 0 SHEET 2 G 2 ALA A 611 LYS A 613 -1 O LYS A 612 N LEU A 604 SHEET 1 H 5 VAL A 783 PHE A 785 0 SHEET 2 H 5 VAL A 796 GLU A 802 -1 O GLY A 800 N ARG A 784 SHEET 3 H 5 PHE A 818 ASN A 826 -1 O VAL A 821 N ILE A 801 SHEET 4 H 5 THR A 876 PRO A 883 -1 O PHE A 880 N VAL A 822 SHEET 5 H 5 GLU A 845 LEU A 846 -1 N GLU A 845 O VAL A 881 SHEET 1 I 3 VAL A 832 ASP A 835 0 SHEET 2 I 3 ARG A 869 VAL A 872 -1 O PHE A 870 N MET A 834 SHEET 3 I 3 ALA A 862 GLU A 864 -1 N ALA A 862 O THR A 871 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.43 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.44 LINK O4 GLC B 3 C1 GLC B 4 1555 1555 1.44 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.44 LINK O4 GLC C 2 C1 GLC C 3 1555 1555 1.45 LINK O4 GLC D 1 C1 GLC D 2 1555 1555 1.44 LINK O4 GLC D 2 C1 GLC D 3 1555 1555 1.44 LINK O4 GLC D 3 C1 GLC D 4 1555 1555 1.45 LINK O GLN A 348 CA CA A 918 1555 1555 2.24 LINK OD1 ASP A 351 CA CA A 918 1555 1555 2.39 LINK O TYR A 353 CA CA A 918 1555 1555 2.26 LINK OD1 ASN A 701 CA CA A 918 1555 1555 2.36 LINK CA CA A 918 O HOH A1031 1555 1555 2.57 LINK CA CA A 918 O HOH A1041 1555 1555 2.50 LINK CA CA A 918 O HOH A1048 1555 1555 2.50 CRYST1 169.260 81.240 58.230 90.00 101.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005908 0.000000 0.001164 0.00000 SCALE2 0.000000 0.012309 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017503 0.00000