HEADER PROTEIN BINDING/CYTOKINE 07-FEB-13 4J4L TITLE MODULAR EVOLUTION AND DESIGN OF THE PROTEIN BINDING INTERFACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN B,REPEAT MODULES,VARIABLE LYMPHOCYTE RECEPTOR B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-100,UNP RESIDUES 141-232; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CHIMERA OF RESIDUES 43-100 FROM INTERNALIN B, REPEAT COMPND 7 MODULES, RESIDUES 141-232 FROM VARIABLE LYMPHOCYTE RECEPTOR B, AND 8 COMPND 8 HIS TAGS; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: INTERLEUKIN-6; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: IL-6,B-CELL STIMULATORY FACTOR 2,BSF-2,CTL DIFFERENTIATION COMPND 13 FACTOR,CDF,HYBRIDOMA GROWTH FACTOR,INTERFERON BETA-2,IFN-BETA-2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES, SYNTHETIC CONSTRUCT, SOURCE 3 EPTATRETUS BURGERI; SOURCE 4 ORGANISM_COMMON: INSHORE HAGFISH; SOURCE 5 ORGANISM_TAXID: 1639, 32630, 7764; SOURCE 6 GENE: VLRB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IL6, IFNB2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LRR, IL-6 BINDING, INTERLEUKIN 6, EXTRACELLULAR MATRIX, PROTEIN KEYWDS 2 BINDING-CYTOKINE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.K.CHEONG,H.J.KIM REVDAT 3 08-NOV-23 4J4L 1 REMARK REVDAT 2 07-JUN-17 4J4L 1 SOURCE DBREF SEQADV REVDAT 1 12-FEB-14 4J4L 0 JRNL AUTH J.LEE,H.J.KIM,C.YANG,J.CHOI,H.KYEONG,J.YUK,K.PARK,Y.J.KIM, JRNL AUTH 2 W.HEU,S.LEE,D.KIM,E.K.JO,H.K.CHEONG,H.S.KIM JRNL TITL MODULAR EVOLUTION AND DESIGN OF THE PROTEIN BINDING JRNL TITL 2 INTERFACE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 38083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.243 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6706 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9074 ; 1.796 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 823 ; 6.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;42.647 ;25.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1257 ;20.692 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;25.951 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1050 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4934 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4J4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38083 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 61.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1ALU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM FORMATE, 15-18% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, PH 8.0, VAPOR DIFFUSION, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.15950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.36100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.00050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.36100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.15950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.00050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 LYS B 63 REMARK 465 LYS B 64 REMARK 465 SER B 65 REMARK 465 VAL B 66 REMARK 465 THR B 67 REMARK 465 ASP B 68 REMARK 465 PRO B 300 REMARK 465 THR B 301 REMARK 465 LEU B 302 REMARK 465 GLU B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 SER C 52 REMARK 465 SER C 53 REMARK 465 LYS C 54 REMARK 465 GLU C 55 REMARK 465 ALA C 56 REMARK 465 LEU C 57 REMARK 465 ALA C 58 REMARK 465 GLU C 59 REMARK 465 ASN C 60 REMARK 465 LEU C 133 REMARK 465 ASP C 134 REMARK 465 ALA C 135 REMARK 465 ILE C 136 REMARK 465 GLY D 17 REMARK 465 SER D 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN D 154 O HOH D 231 1.99 REMARK 500 OG SER A 77 O HOH A 442 2.02 REMARK 500 OD1 ASN A 145 O HOH A 457 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 246 CE2 TRP A 246 CD2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 151 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO B 232 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 CYS C 44 CA - CB - SG ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG D 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG D 30 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU D 84 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 83 49.50 -152.23 REMARK 500 ASP A 87 32.24 -97.72 REMARK 500 LEU A 143 59.16 -102.74 REMARK 500 GLN A 157 -37.43 72.27 REMARK 500 ASN A 226 -159.29 -123.63 REMARK 500 ALA A 281 61.46 -166.38 REMARK 500 ALA B 83 48.51 -164.83 REMARK 500 ASP B 87 47.44 -106.44 REMARK 500 GLN B 92 126.88 -37.71 REMARK 500 LEU B 143 49.97 -89.08 REMARK 500 PRO B 160 177.86 -46.28 REMARK 500 ASN B 178 -168.38 -115.06 REMARK 500 LEU B 191 57.37 -98.56 REMARK 500 ASN B 202 -138.04 -118.98 REMARK 500 GLN B 203 31.46 -164.00 REMARK 500 ASP B 220 108.26 -161.82 REMARK 500 GLN B 225 60.70 63.17 REMARK 500 PRO B 232 25.36 -57.95 REMARK 500 ASP B 233 119.29 56.43 REMARK 500 ASP B 249 51.20 76.91 REMARK 500 PRO B 257 34.03 -96.58 REMARK 500 ALA B 281 69.31 -164.08 REMARK 500 ASN D 45 -9.05 -57.78 REMARK 500 SER D 47 -156.26 -169.48 REMARK 500 ASN D 60 3.02 -63.45 REMARK 500 ASN D 63 41.28 -99.46 REMARK 500 LYS D 131 -79.64 -54.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUE 101-209 REPRESENTS CONSENSUS DESIGNED REPEAT MODULES. REMARK 999 THE SEQUENCES OF REPEAT MODULES IS BASED ON VARIABLE LYMPHOCYTE. DBREF 4J4L A 43 100 UNP A4L9V2 A4L9V2_LISMN 43 100 DBREF 4J4L A 101 209 PDB 4J4L 4J4L 101 209 DBREF 4J4L A 210 301 UNP Q4G1L3 Q4G1L3_EPTBU 141 232 DBREF 4J4L B 43 100 UNP A4L9V2 A4L9V2_LISMN 43 100 DBREF 4J4L B 101 209 PDB 4J4L 4J4L 101 209 DBREF 4J4L B 210 301 UNP Q4G1L3 Q4G1L3_EPTBU 141 232 DBREF 4J4L C 19 184 UNP P05231 IL6_HUMAN 47 212 DBREF 4J4L D 19 184 UNP P05231 IL6_HUMAN 47 212 SEQADV 4J4L ALA A 59 UNP A4L9V2 ASP 59 CONFLICT SEQADV 4J4L LEU A 302 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L GLU A 303 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS A 304 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS A 305 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS A 306 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS A 307 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS A 308 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS A 309 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L ALA B 59 UNP A4L9V2 ASP 59 CONFLICT SEQADV 4J4L LEU B 302 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L GLU B 303 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS B 304 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS B 305 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS B 306 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS B 307 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS B 308 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L HIS B 309 UNP Q4G1L3 EXPRESSION TAG SEQADV 4J4L GLY C 17 UNP P05231 EXPRESSION TAG SEQADV 4J4L SER C 18 UNP P05231 EXPRESSION TAG SEQADV 4J4L GLY D 17 UNP P05231 EXPRESSION TAG SEQADV 4J4L SER D 18 UNP P05231 EXPRESSION TAG SEQRES 1 A 267 PRO ILE LYS GLN ILE PHE PRO ASP ASP ALA PHE ALA GLU SEQRES 2 A 267 THR ILE LYS ALA ASN LEU LYS LYS LYS SER VAL THR ASP SEQRES 3 A 267 ALA VAL THR GLN ASN GLU LEU ASN SER ILE ASP GLN ILE SEQRES 4 A 267 ILE ALA ASN ASN SER ASP ILE LYS SER VAL GLN GLY ILE SEQRES 5 A 267 GLN TYR LEU PRO ASN VAL ARG TYR LEU ALA LEU GLY GLY SEQRES 6 A 267 ASN LYS LEU HIS ASP ILE SER ALA LEU LYS GLU LEU THR SEQRES 7 A 267 ASN LEU THR TYR LEU THR LEU GLU PRO ASN GLN LEU GLN SEQRES 8 A 267 SER LEU PRO ASN GLY VAL PHE ASP LYS LEU THR ASN LEU SEQRES 9 A 267 LYS GLU LEU GLN LEU TRP ALA ASN GLN LEU GLN SER LEU SEQRES 10 A 267 PRO ASP GLY VAL PHE ASP LYS LEU THR ASN LEU THR TYR SEQRES 11 A 267 LEU ASN LEU ALA PHE ASN GLN LEU GLN SER LEU PRO LYS SEQRES 12 A 267 GLY VAL PHE ASP LYS LEU THR ASN LEU THR GLU LEU ASP SEQRES 13 A 267 LEU SER TYR ASN GLN LEU GLN SER LEU PRO LYS GLY VAL SEQRES 14 A 267 PHE ASP LYS LEU THR GLN LEU LYS ASP LEU ARG LEU TYR SEQRES 15 A 267 GLN ASN GLN LEU LYS SER VAL PRO ASP GLY VAL PHE ASP SEQRES 16 A 267 ARG LEU THR SER LEU GLN TYR ILE TRP LEU HIS ASP ASN SEQRES 17 A 267 PRO TRP ASP CYS THR CYS PRO GLY ILE ARG TYR LEU SER SEQRES 18 A 267 GLU TRP ILE ASN LYS HIS SER GLY VAL VAL ARG ASN SER SEQRES 19 A 267 ALA GLY SER VAL ALA PRO ASP SER ALA LYS CYS SER GLY SEQRES 20 A 267 SER GLY LYS PRO VAL ARG SER ILE ILE CYS PRO THR LEU SEQRES 21 A 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 267 PRO ILE LYS GLN ILE PHE PRO ASP ASP ALA PHE ALA GLU SEQRES 2 B 267 THR ILE LYS ALA ASN LEU LYS LYS LYS SER VAL THR ASP SEQRES 3 B 267 ALA VAL THR GLN ASN GLU LEU ASN SER ILE ASP GLN ILE SEQRES 4 B 267 ILE ALA ASN ASN SER ASP ILE LYS SER VAL GLN GLY ILE SEQRES 5 B 267 GLN TYR LEU PRO ASN VAL ARG TYR LEU ALA LEU GLY GLY SEQRES 6 B 267 ASN LYS LEU HIS ASP ILE SER ALA LEU LYS GLU LEU THR SEQRES 7 B 267 ASN LEU THR TYR LEU THR LEU GLU PRO ASN GLN LEU GLN SEQRES 8 B 267 SER LEU PRO ASN GLY VAL PHE ASP LYS LEU THR ASN LEU SEQRES 9 B 267 LYS GLU LEU GLN LEU TRP ALA ASN GLN LEU GLN SER LEU SEQRES 10 B 267 PRO ASP GLY VAL PHE ASP LYS LEU THR ASN LEU THR TYR SEQRES 11 B 267 LEU ASN LEU ALA PHE ASN GLN LEU GLN SER LEU PRO LYS SEQRES 12 B 267 GLY VAL PHE ASP LYS LEU THR ASN LEU THR GLU LEU ASP SEQRES 13 B 267 LEU SER TYR ASN GLN LEU GLN SER LEU PRO LYS GLY VAL SEQRES 14 B 267 PHE ASP LYS LEU THR GLN LEU LYS ASP LEU ARG LEU TYR SEQRES 15 B 267 GLN ASN GLN LEU LYS SER VAL PRO ASP GLY VAL PHE ASP SEQRES 16 B 267 ARG LEU THR SER LEU GLN TYR ILE TRP LEU HIS ASP ASN SEQRES 17 B 267 PRO TRP ASP CYS THR CYS PRO GLY ILE ARG TYR LEU SER SEQRES 18 B 267 GLU TRP ILE ASN LYS HIS SER GLY VAL VAL ARG ASN SER SEQRES 19 B 267 ALA GLY SER VAL ALA PRO ASP SER ALA LYS CYS SER GLY SEQRES 20 B 267 SER GLY LYS PRO VAL ARG SER ILE ILE CYS PRO THR LEU SEQRES 21 B 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 168 GLY SER LEU THR SER SER GLU ARG ILE ASP LYS GLN ILE SEQRES 2 C 168 ARG TYR ILE LEU ASP GLY ILE SER ALA LEU ARG LYS GLU SEQRES 3 C 168 THR CYS ASN LYS SER ASN MET CYS GLU SER SER LYS GLU SEQRES 4 C 168 ALA LEU ALA GLU ASN ASN LEU ASN LEU PRO LYS MET ALA SEQRES 5 C 168 GLU LYS ASP GLY CYS PHE GLN SER GLY PHE ASN GLU GLU SEQRES 6 C 168 THR CYS LEU VAL LYS ILE ILE THR GLY LEU LEU GLU PHE SEQRES 7 C 168 GLU VAL TYR LEU GLU TYR LEU GLN ASN ARG PHE GLU SER SEQRES 8 C 168 SER GLU GLU GLN ALA ARG ALA VAL GLN MET SER THR LYS SEQRES 9 C 168 VAL LEU ILE GLN PHE LEU GLN LYS LYS ALA LYS ASN LEU SEQRES 10 C 168 ASP ALA ILE THR THR PRO ASP PRO THR THR ASN ALA SER SEQRES 11 C 168 LEU LEU THR LYS LEU GLN ALA GLN ASN GLN TRP LEU GLN SEQRES 12 C 168 ASP MET THR THR HIS LEU ILE LEU ARG SER PHE LYS GLU SEQRES 13 C 168 PHE LEU GLN SER SER LEU ARG ALA LEU ARG GLN MET SEQRES 1 D 168 GLY SER LEU THR SER SER GLU ARG ILE ASP LYS GLN ILE SEQRES 2 D 168 ARG TYR ILE LEU ASP GLY ILE SER ALA LEU ARG LYS GLU SEQRES 3 D 168 THR CYS ASN LYS SER ASN MET CYS GLU SER SER LYS GLU SEQRES 4 D 168 ALA LEU ALA GLU ASN ASN LEU ASN LEU PRO LYS MET ALA SEQRES 5 D 168 GLU LYS ASP GLY CYS PHE GLN SER GLY PHE ASN GLU GLU SEQRES 6 D 168 THR CYS LEU VAL LYS ILE ILE THR GLY LEU LEU GLU PHE SEQRES 7 D 168 GLU VAL TYR LEU GLU TYR LEU GLN ASN ARG PHE GLU SER SEQRES 8 D 168 SER GLU GLU GLN ALA ARG ALA VAL GLN MET SER THR LYS SEQRES 9 D 168 VAL LEU ILE GLN PHE LEU GLN LYS LYS ALA LYS ASN LEU SEQRES 10 D 168 ASP ALA ILE THR THR PRO ASP PRO THR THR ASN ALA SER SEQRES 11 D 168 LEU LEU THR LYS LEU GLN ALA GLN ASN GLN TRP LEU GLN SEQRES 12 D 168 ASP MET THR THR HIS LEU ILE LEU ARG SER PHE LYS GLU SEQRES 13 D 168 PHE LEU GLN SER SER LEU ARG ALA LEU ARG GLN MET FORMUL 5 HOH *158(H2 O) HELIX 1 1 PRO A 43 PHE A 48 1 6 HELIX 2 2 ASP A 50 LYS A 62 1 13 HELIX 3 3 THR A 71 ILE A 78 1 8 HELIX 4 4 GLY A 93 LEU A 97 5 5 HELIX 5 5 ILE A 113 LYS A 117 5 5 HELIX 6 6 ILE A 259 HIS A 269 1 11 HELIX 7 7 PRO A 293 ILE A 297 5 5 HELIX 8 8 ILE B 44 PHE B 48 1 5 HELIX 9 9 ASP B 50 LYS B 62 1 13 HELIX 10 10 THR B 71 SER B 77 1 7 HELIX 11 11 GLY B 93 LEU B 97 5 5 HELIX 12 12 ILE B 113 LEU B 119 5 7 HELIX 13 13 ILE B 259 SER B 270 1 12 HELIX 14 14 ALA B 281 ALA B 285 5 5 HELIX 15 15 PRO B 293 ILE B 297 5 5 HELIX 16 16 SER C 18 ASN C 48 1 31 HELIX 17 17 ALA C 68 GLY C 72 5 5 HELIX 18 18 ASN C 79 TYR C 100 1 22 HELIX 19 19 SER C 108 ALA C 130 1 23 HELIX 20 20 ASP C 140 ALA C 153 1 14 HELIX 21 21 ASN C 155 ARG C 182 1 28 HELIX 22 22 THR D 20 ASN D 45 1 26 HELIX 23 23 ALA D 58 LEU D 62 5 5 HELIX 24 24 ALA D 68 GLY D 72 5 5 HELIX 25 25 ASN D 79 ASN D 103 1 25 HELIX 26 26 SER D 108 LYS D 128 1 21 HELIX 27 27 ASP D 140 ALA D 153 1 14 HELIX 28 28 ASN D 155 ARG D 182 1 28 SHEET 1 A 8 GLN A 80 ALA A 83 0 SHEET 2 A 8 TYR A 102 GLY A 107 1 O ALA A 104 N ALA A 83 SHEET 3 A 8 TYR A 124 PRO A 129 1 O GLU A 128 N LEU A 105 SHEET 4 A 8 GLU A 148 LEU A 151 1 O GLN A 150 N LEU A 125 SHEET 5 A 8 TYR A 172 ASN A 174 1 O ASN A 174 N LEU A 151 SHEET 6 A 8 GLU A 196 ASP A 198 1 O GLU A 196 N LEU A 173 SHEET 7 A 8 ASP A 220 ARG A 222 1 O ASP A 220 N LEU A 197 SHEET 8 A 8 TYR A 244 TRP A 246 1 O TYR A 244 N LEU A 221 SHEET 1 B 9 GLN B 80 ALA B 83 0 SHEET 2 B 9 TYR B 102 GLY B 107 1 O ALA B 104 N ALA B 83 SHEET 3 B 9 TYR B 124 PRO B 129 1 O GLU B 128 N LEU B 105 SHEET 4 B 9 GLU B 148 LEU B 151 1 O GLN B 150 N LEU B 125 SHEET 5 B 9 TYR B 172 ASN B 174 1 O ASN B 174 N LEU B 149 SHEET 6 B 9 GLU B 196 ASP B 198 1 O GLU B 196 N LEU B 173 SHEET 7 B 9 ASP B 220 ARG B 222 1 O ASP B 220 N LEU B 197 SHEET 8 B 9 TYR B 244 TRP B 246 1 O TYR B 244 N LEU B 221 SHEET 9 B 9 VAL B 273 ARG B 274 1 O ARG B 274 N ILE B 245 SSBOND 1 CYS A 254 CYS A 287 1555 1555 2.09 SSBOND 2 CYS A 256 CYS A 299 1555 1555 2.09 SSBOND 3 CYS B 254 CYS B 287 1555 1555 2.05 SSBOND 4 CYS C 44 CYS C 50 1555 1555 2.07 SSBOND 5 CYS C 73 CYS C 83 1555 1555 2.09 SSBOND 6 CYS D 44 CYS D 50 1555 1555 2.05 SSBOND 7 CYS D 73 CYS D 83 1555 1555 2.11 CISPEP 1 CYS A 256 PRO A 257 0 -1.49 CISPEP 2 CYS B 256 PRO B 257 0 -6.74 CRYST1 46.319 134.001 148.722 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006724 0.00000