data_4J50 # _entry.id 4J50 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4J50 pdb_00004j50 10.2210/pdb4j50/pdb NDB NA2239 ? ? RCSB RCSB077603 ? ? WWPDB D_1000077603 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-20 2 'Structure model' 1 1 2013-05-22 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_struct_special_symmetry 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4J50 _pdbx_database_status.recvd_initial_deposition_date 2013-02-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Park, H.' 1 'Disney, M.D.' 2 # _citation.id primary _citation.title ;A dynamic structural model of expanded RNA CAG repeats: a refined X-ray structure and computational investigations using molecular dynamics and umbrella sampling simulations. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 135 _citation.page_first 3528 _citation.page_last 3538 _citation.year 2013 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23441937 _citation.pdbx_database_id_DOI 10.1021/ja3108627 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yildirim, I.' 1 ? primary 'Park, H.' 2 ? primary 'Disney, M.D.' 3 ? primary 'Schatz, G.C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*AP*GP*CP*AP*GP*CP*AP*GP*GP*UP*CP*C)-3') ; 6108.689 2 ? ? ? 'Triple CAG RNA Repeat' 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 water nat water 18.015 112 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGGGCCAGCAGCAGGUCC _entity_poly.pdbx_seq_one_letter_code_can UUGGGCCAGCAGCAGGUCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 G n 1 5 G n 1 6 C n 1 7 C n 1 8 A n 1 9 G n 1 10 C n 1 11 A n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 U n 1 18 C n 1 19 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'vitro transcription' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n B 1 1 U 1 1 1 U U B . n B 1 2 U 2 2 2 U U B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 C 6 6 6 C C B . n B 1 7 C 7 7 7 C C B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n B 1 11 A 11 11 11 A A B . n B 1 12 G 12 12 12 G G B . n B 1 13 C 13 13 13 C C B . n B 1 14 A 14 14 14 A A B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 U 17 17 17 U U B . n B 1 18 C 18 18 18 C C B . n B 1 19 C 19 19 19 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 1 101 2 PO4 PO4 A . D 2 PO4 1 101 2 PO4 PO4 B . E 3 HOH 1 201 4 HOH HOH A . E 3 HOH 2 202 7 HOH HOH A . E 3 HOH 3 203 13 HOH HOH A . E 3 HOH 4 204 14 HOH HOH A . E 3 HOH 5 205 17 HOH HOH A . E 3 HOH 6 206 19 HOH HOH A . E 3 HOH 7 207 21 HOH HOH A . E 3 HOH 8 208 23 HOH HOH A . E 3 HOH 9 209 24 HOH HOH A . E 3 HOH 10 210 26 HOH HOH A . E 3 HOH 11 211 27 HOH HOH A . E 3 HOH 12 212 32 HOH HOH A . E 3 HOH 13 213 33 HOH HOH A . E 3 HOH 14 214 36 HOH HOH A . E 3 HOH 15 215 40 HOH HOH A . E 3 HOH 16 216 42 HOH HOH A . E 3 HOH 17 217 44 HOH HOH A . E 3 HOH 18 218 49 HOH HOH A . E 3 HOH 19 219 50 HOH HOH A . E 3 HOH 20 220 51 HOH HOH A . E 3 HOH 21 221 53 HOH HOH A . E 3 HOH 22 222 54 HOH HOH A . E 3 HOH 23 223 56 HOH HOH A . E 3 HOH 24 224 57 HOH HOH A . E 3 HOH 25 225 58 HOH HOH A . E 3 HOH 26 226 59 HOH HOH A . E 3 HOH 27 227 60 HOH HOH A . E 3 HOH 28 228 63 HOH HOH A . E 3 HOH 29 229 66 HOH HOH A . E 3 HOH 30 230 68 HOH HOH A . E 3 HOH 31 231 71 HOH HOH A . E 3 HOH 32 232 74 HOH HOH A . E 3 HOH 33 233 75 HOH HOH A . E 3 HOH 34 234 76 HOH HOH A . E 3 HOH 35 235 77 HOH HOH A . E 3 HOH 36 236 80 HOH HOH A . E 3 HOH 37 237 81 HOH HOH A . E 3 HOH 38 238 83 HOH HOH A . E 3 HOH 39 239 84 HOH HOH A . E 3 HOH 40 240 85 HOH HOH A . E 3 HOH 41 241 86 HOH HOH A . E 3 HOH 42 242 88 HOH HOH A . E 3 HOH 43 243 90 HOH HOH A . E 3 HOH 44 244 91 HOH HOH A . E 3 HOH 45 245 92 HOH HOH A . E 3 HOH 46 246 95 HOH HOH A . E 3 HOH 47 247 96 HOH HOH A . E 3 HOH 48 248 98 HOH HOH A . E 3 HOH 49 249 104 HOH HOH A . E 3 HOH 50 250 105 HOH HOH A . E 3 HOH 51 251 106 HOH HOH A . E 3 HOH 52 252 107 HOH HOH A . E 3 HOH 53 253 108 HOH HOH A . E 3 HOH 54 254 109 HOH HOH A . E 3 HOH 55 255 111 HOH HOH A . E 3 HOH 56 256 112 HOH HOH A . F 3 HOH 1 201 1 HOH HOH B . F 3 HOH 2 202 2 HOH HOH B . F 3 HOH 3 203 3 HOH HOH B . F 3 HOH 4 204 5 HOH HOH B . F 3 HOH 5 205 6 HOH HOH B . F 3 HOH 6 206 8 HOH HOH B . F 3 HOH 7 207 9 HOH HOH B . F 3 HOH 8 208 10 HOH HOH B . F 3 HOH 9 209 11 HOH HOH B . F 3 HOH 10 210 12 HOH HOH B . F 3 HOH 11 211 15 HOH HOH B . F 3 HOH 12 212 16 HOH HOH B . F 3 HOH 13 213 18 HOH HOH B . F 3 HOH 14 214 20 HOH HOH B . F 3 HOH 15 215 22 HOH HOH B . F 3 HOH 16 216 25 HOH HOH B . F 3 HOH 17 217 28 HOH HOH B . F 3 HOH 18 218 29 HOH HOH B . F 3 HOH 19 219 30 HOH HOH B . F 3 HOH 20 220 31 HOH HOH B . F 3 HOH 21 221 34 HOH HOH B . F 3 HOH 22 222 35 HOH HOH B . F 3 HOH 23 223 37 HOH HOH B . F 3 HOH 24 224 38 HOH HOH B . F 3 HOH 25 225 39 HOH HOH B . F 3 HOH 26 226 41 HOH HOH B . F 3 HOH 27 227 43 HOH HOH B . F 3 HOH 28 228 45 HOH HOH B . F 3 HOH 29 229 46 HOH HOH B . F 3 HOH 30 230 47 HOH HOH B . F 3 HOH 31 231 48 HOH HOH B . F 3 HOH 32 232 52 HOH HOH B . F 3 HOH 33 233 55 HOH HOH B . F 3 HOH 34 234 61 HOH HOH B . F 3 HOH 35 235 62 HOH HOH B . F 3 HOH 36 236 64 HOH HOH B . F 3 HOH 37 237 65 HOH HOH B . F 3 HOH 38 238 67 HOH HOH B . F 3 HOH 39 239 69 HOH HOH B . F 3 HOH 40 240 70 HOH HOH B . F 3 HOH 41 241 72 HOH HOH B . F 3 HOH 42 242 73 HOH HOH B . F 3 HOH 43 243 78 HOH HOH B . F 3 HOH 44 244 79 HOH HOH B . F 3 HOH 45 245 82 HOH HOH B . F 3 HOH 46 246 87 HOH HOH B . F 3 HOH 47 247 89 HOH HOH B . F 3 HOH 48 248 93 HOH HOH B . F 3 HOH 49 249 94 HOH HOH B . F 3 HOH 50 250 97 HOH HOH B . F 3 HOH 51 251 99 HOH HOH B . F 3 HOH 52 252 100 HOH HOH B . F 3 HOH 53 253 101 HOH HOH B . F 3 HOH 54 254 102 HOH HOH B . F 3 HOH 55 255 103 HOH HOH B . F 3 HOH 56 256 110 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 0 A PO4 101 ? O1 ? C PO4 ? O1 2 1 N 0 A PO4 101 ? O4 ? C PO4 ? O4 3 1 N 0 B PO4 101 ? O1 ? D PO4 ? O1 4 1 N 0 B PO4 101 ? O4 ? D PO4 ? O4 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASES phasing . ? 1 PHENIX refinement '(phenix.refine: 1.7_650)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _cell.entry_id 4J50 _cell.length_a 46.338 _cell.length_b 46.338 _cell.length_c 134.597 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4J50 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4J50 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 45.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '15 mM Mg Acetate, 50 mM Na cacodylate, 1.7 M Am Sulfate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2011-05-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Liquid nitrogen-cooled double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97937 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97937 # _reflns.entry_id 4J50 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.65 _reflns.number_obs 13022 _reflns.number_all 12996 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4J50 _refine.ls_number_reflns_obs 12318 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.21 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.433 _refine.ls_d_res_high 1.650 _refine.ls_percent_reflns_obs 94.97 _refine.ls_R_factor_obs 0.1690 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1685 _refine.ls_R_factor_R_free 0.1797 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.94 _refine.ls_number_reflns_R_free 608 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.0277 _refine.aniso_B[2][2] -0.0277 _refine.aniso_B[3][3] 0.0555 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.459 _refine.solvent_model_param_bsol 63.182 _refine.pdbx_solvent_vdw_probe_radii 0.60 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.41 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.10 _refine.pdbx_overall_phase_error 16.60 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 930 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 22.433 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 910 ? 'X-RAY DIFFRACTION' f_angle_d 0.697 ? ? 1416 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 13.863 ? ? 448 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.053 ? ? 188 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 38 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id 1 A 612 ? ? POSITIONAL 1 ? ? ? ? ? ? 1 'X-RAY DIFFRACTION' 2 B 612 0.006 ? POSITIONAL 1 ? ? ? ? ? ? 2 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.6504 1.8164 2701 0.1890 88.00 0.1790 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.8164 2.0791 2934 0.1661 95.00 0.2013 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.0791 2.6188 3017 0.1666 98.00 0.1932 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.6188 22.4349 3058 0.1670 99.00 0.1698 . . 155 . . . . 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 ? 1 2 ? 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id 1 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 'chain A' ? ? 2 ? ? ? ? 1 ? ? ? ? ? ? ? ? ? 1 'chain B' ? ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _database_PDB_matrix.entry_id 4J50 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4J50 _struct.title 'Crystal Structure of an Expanded RNA CAG Repeat' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4J50 _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;A form RNA, CAG repeat expansion, PolyQ, Gain of RNA Function, Huntingtin Disease, Spinal-Bulbar Muscular Atrophy, Dentatorubral-pallidoluysian atrophy, Spinocerebellar ataxia, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4J50 _struct_ref.pdbx_db_accession 4J50 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4J50 A 1 ? 19 ? 4J50 1 ? 19 ? 1 19 2 1 4J50 B 1 ? 19 ? 4J50 1 ? 19 ? 1 19 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2030 ? 1 MORE -8 ? 1 'SSA (A^2)' 6490 ? 2 'ABSA (A^2)' 9650 ? 2 MORE -77 ? 2 'SSA (A^2)' 15900 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2,3 A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 19 N3 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 19 O2 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 19 N4 ? ? A G 3 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 4 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 4 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 4 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B U 17 O2 ? ? A G 5 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A G 5 O6 ? ? ? 1_555 B U 17 N3 ? ? A G 5 B U 17 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 6 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 6 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 6 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 15 N1 ? ? A C 7 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 15 O6 ? ? A C 7 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 15 N2 ? ? A C 7 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 8 N1 ? ? ? 1_555 B A 14 N6 ? ? A A 8 B A 14 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog16 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 13 N3 ? ? A G 9 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 13 O2 ? ? A G 9 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 13 N4 ? ? A G 9 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 10 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 12 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 12 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 12 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 12 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 13 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 13 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 13 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 13 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 13 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 14 N6 ? ? ? 1_555 B A 8 N1 ? ? A A 14 B A 8 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog29 hydrog ? ? A G 15 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 15 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 15 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 15 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 16 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 16 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 16 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 17 N3 ? ? ? 1_555 B G 5 O6 ? ? A U 17 B G 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A U 17 O2 ? ? ? 1_555 B G 5 N1 ? ? A U 17 B G 5 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A C 18 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 18 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 18 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 18 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 18 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 19 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 101 ? 6 'BINDING SITE FOR RESIDUE PO4 A 101' AC2 Software B PO4 101 ? 5 'BINDING SITE FOR RESIDUE PO4 B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 5 ? G A 5 . ? 3_555 ? 2 AC1 6 C A 6 ? C A 6 . ? 3_555 ? 3 AC1 6 C A 6 ? C A 6 . ? 2_555 ? 4 AC1 6 C A 6 ? C A 6 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 229 . ? 2_555 ? 6 AC1 6 HOH E . ? HOH A 229 . ? 1_555 ? 7 AC2 5 G B 5 ? G B 5 . ? 2_555 ? 8 AC2 5 C B 6 ? C B 6 . ? 2_555 ? 9 AC2 5 C B 6 ? C B 6 . ? 3_555 ? 10 AC2 5 HOH F . ? HOH B 214 . ? 3_555 ? 11 AC2 5 HOH F . ? HOH B 214 . ? 1_555 ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A PO4 101 ? C PO4 . 2 1 B PO4 101 ? D PO4 . 3 1 A HOH 206 ? E HOH . 4 1 A HOH 208 ? E HOH . 5 1 A HOH 218 ? E HOH . 6 1 A HOH 221 ? E HOH . 7 1 B HOH 201 ? F HOH . 8 1 B HOH 204 ? F HOH . 9 1 B HOH 237 ? F HOH . 10 1 B HOH 239 ? F HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 2.9372 14.7626 -15.2345 0.4101 0.2306 0.2996 -0.0008 -0.0305 -0.0014 0.0048 0.0034 0.0069 0.0033 -0.0065 -0.0072 0.0113 -0.1705 0.0153 0.3184 0.0527 -0.2202 -0.1870 0.2038 -0.0003 'X-RAY DIFFRACTION' 2 ? refined 6.8751 6.4091 -7.1340 0.3348 0.3374 0.2039 -0.0660 0.0039 -0.0623 0.1516 0.7883 0.2641 -0.2181 0.1836 -0.3655 0.1851 -0.2435 0.0637 0.2302 0.0656 -0.0341 -0.3668 0.3249 0.1853 'X-RAY DIFFRACTION' 3 ? refined 10.2088 18.0218 5.9077 1.1032 1.0635 0.2292 -0.4347 0.2547 -0.2411 0.0074 0.0104 0.0563 0.0101 -0.0156 -0.0237 -0.0337 -0.0464 0.0304 0.0270 0.0715 -0.1087 -0.0552 0.0561 0.0430 'X-RAY DIFFRACTION' 4 ? refined 0.2310 9.8355 17.2695 0.3227 0.1867 0.2324 -0.0014 0.0389 0.0071 0.3774 0.2861 0.1143 -0.1779 0.1900 -0.1289 0.1727 -0.0180 -0.0247 -0.1721 0.1193 -0.2007 -0.4818 0.1707 0.0223 'X-RAY DIFFRACTION' 5 ? refined 11.3127 9.9289 15.2401 0.2853 0.3657 0.2707 -0.0713 -0.0093 0.0273 0.0012 0.0065 0.0060 0.0022 0.0027 0.0079 -0.0136 0.3123 0.1124 -0.1827 0.0564 0.0453 -0.3046 0.0782 -0.0002 'X-RAY DIFFRACTION' 6 ? refined 3.0712 5.4625 9.7978 0.2619 0.2649 0.2177 -0.0336 0.0358 0.0038 0.0034 0.0084 0.0145 -0.0021 -0.0000 0.0141 0.1231 0.1447 -0.1183 -0.0908 0.1664 -0.0619 -0.2216 0.1884 0.0001 'X-RAY DIFFRACTION' 7 ? refined 7.0891 17.3927 -3.3154 1.2659 0.6994 0.1963 -0.1742 0.2738 -0.0269 0.0610 0.0129 0.4723 -0.0254 -0.0660 -0.0219 0.0973 0.0752 0.0947 -0.0588 0.1746 0.1083 -0.1116 0.0616 0.3405 'X-RAY DIFFRACTION' 8 ? refined 8.4053 5.1194 -17.2638 0.2115 0.2921 0.2259 -0.0536 0.0169 -0.0401 0.5017 0.1669 0.1944 -0.1426 0.2871 -0.1212 0.2102 -0.1475 0.1600 -0.0080 0.0801 0.0404 -0.3612 0.3797 0.0263 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 1:4)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 5:10)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 11:14)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 15:19)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain B and resid 1:4)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain B and resid 5:8)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain B and resid 9:14)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain B and resid 15:19)' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 PO4 P P N N 114 PO4 O1 O N N 115 PO4 O2 O N N 116 PO4 O3 O N N 117 PO4 O4 O N N 118 U OP3 O N N 119 U P P N N 120 U OP1 O N N 121 U OP2 O N N 122 U "O5'" O N N 123 U "C5'" C N N 124 U "C4'" C N R 125 U "O4'" O N N 126 U "C3'" C N S 127 U "O3'" O N N 128 U "C2'" C N R 129 U "O2'" O N N 130 U "C1'" C N R 131 U N1 N N N 132 U C2 C N N 133 U O2 O N N 134 U N3 N N N 135 U C4 C N N 136 U O4 O N N 137 U C5 C N N 138 U C6 C N N 139 U HOP3 H N N 140 U HOP2 H N N 141 U "H5'" H N N 142 U "H5''" H N N 143 U "H4'" H N N 144 U "H3'" H N N 145 U "HO3'" H N N 146 U "H2'" H N N 147 U "HO2'" H N N 148 U "H1'" H N N 149 U H3 H N N 150 U H5 H N N 151 U H6 H N N 152 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PO4 P O1 doub N N 118 PO4 P O2 sing N N 119 PO4 P O3 sing N N 120 PO4 P O4 sing N N 121 U OP3 P sing N N 122 U OP3 HOP3 sing N N 123 U P OP1 doub N N 124 U P OP2 sing N N 125 U P "O5'" sing N N 126 U OP2 HOP2 sing N N 127 U "O5'" "C5'" sing N N 128 U "C5'" "C4'" sing N N 129 U "C5'" "H5'" sing N N 130 U "C5'" "H5''" sing N N 131 U "C4'" "O4'" sing N N 132 U "C4'" "C3'" sing N N 133 U "C4'" "H4'" sing N N 134 U "O4'" "C1'" sing N N 135 U "C3'" "O3'" sing N N 136 U "C3'" "C2'" sing N N 137 U "C3'" "H3'" sing N N 138 U "O3'" "HO3'" sing N N 139 U "C2'" "O2'" sing N N 140 U "C2'" "C1'" sing N N 141 U "C2'" "H2'" sing N N 142 U "O2'" "HO2'" sing N N 143 U "C1'" N1 sing N N 144 U "C1'" "H1'" sing N N 145 U N1 C2 sing N N 146 U N1 C6 sing N N 147 U C2 O2 doub N N 148 U C2 N3 sing N N 149 U N3 C4 sing N N 150 U N3 H3 sing N N 151 U C4 O4 doub N N 152 U C4 C5 sing N N 153 U C5 C6 doub N N 154 U C5 H5 sing N N 155 U C6 H6 sing N N 156 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4J50 'double helix' 4J50 'a-form double helix' 4J50 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 19 1_555 -0.240 -0.093 -0.055 -4.684 -1.157 -1.555 1 A_G3:C19_B A 3 ? B 19 ? 19 1 1 A G 4 1_555 B C 18 1_555 -0.053 -0.040 -0.201 -6.963 -16.064 3.561 2 A_G4:C18_B A 4 ? B 18 ? 19 1 1 A G 5 1_555 B U 17 1_555 -2.314 -0.527 -0.082 -2.755 -9.093 -1.015 3 A_G5:U17_B A 5 ? B 17 ? 28 1 1 A C 6 1_555 B G 16 1_555 0.406 -0.155 -0.184 4.920 -13.448 -0.989 4 A_C6:G16_B A 6 ? B 16 ? 19 1 1 A C 7 1_555 B G 15 1_555 0.360 -0.127 0.067 1.637 -10.887 -0.440 5 A_C7:G15_B A 7 ? B 15 ? 19 1 1 A A 8 1_555 B A 14 1_555 1.891 4.073 0.350 -8.995 -4.245 -71.283 6 A_A8:A14_B A 8 ? B 14 ? ? 3 1 A G 9 1_555 B C 13 1_555 -0.730 0.089 0.075 4.617 -20.060 8.806 7 A_G9:C13_B A 9 ? B 13 ? 19 1 1 A C 10 1_555 B G 12 1_555 -0.007 0.035 -0.262 5.759 -22.135 1.975 8 A_C10:G12_B A 10 ? B 12 ? 19 1 1 A G 12 1_555 B C 10 1_555 0.011 0.033 -0.264 -5.848 -22.125 1.966 9 A_G12:C10_B A 12 ? B 10 ? 19 1 1 A C 13 1_555 B G 9 1_555 0.734 0.086 0.077 -4.675 -20.144 8.797 10 A_C13:G9_B A 13 ? B 9 ? 19 1 1 A A 14 1_555 B A 8 1_555 -1.889 -4.069 -0.347 8.995 4.305 71.257 11 A_A14:A8_B A 14 ? B 8 ? ? 3 1 A G 15 1_555 B C 7 1_555 -0.365 -0.132 0.059 -1.919 -10.828 -0.339 12 A_G15:C7_B A 15 ? B 7 ? 19 1 1 A G 16 1_555 B C 6 1_555 -0.402 -0.152 -0.174 -5.079 -13.316 -1.037 13 A_G16:C6_B A 16 ? B 6 ? 19 1 1 A U 17 1_555 B G 5 1_555 2.301 -0.525 -0.079 2.757 -8.744 -0.990 14 A_U17:G5_B A 17 ? B 5 ? 28 1 1 A C 18 1_555 B G 4 1_555 0.044 -0.044 -0.205 6.936 -15.976 3.707 15 A_C18:G4_B A 18 ? B 4 ? 19 1 1 A C 19 1_555 B G 3 1_555 0.240 -0.094 -0.051 4.639 -1.076 -1.658 16 A_C19:G3_B A 19 ? B 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 19 1_555 A G 4 1_555 B C 18 1_555 0.414 -1.787 3.409 1.735 5.470 32.140 -4.131 -0.434 3.088 9.782 -3.104 32.635 1 AA_G3G4:C18C19_BB A 3 ? B 19 ? A 4 ? B 18 ? 1 A G 4 1_555 B C 18 1_555 A G 5 1_555 B U 17 1_555 -0.626 -1.792 2.926 -5.964 9.473 24.675 -5.801 0.097 2.191 20.850 13.126 27.060 2 AA_G4G5:U17C18_BB A 4 ? B 18 ? A 5 ? B 17 ? 1 A G 5 1_555 B U 17 1_555 A C 6 1_555 B G 16 1_555 0.073 -1.338 3.067 0.341 6.551 40.328 -2.570 -0.070 2.826 9.426 -0.491 40.836 3 AA_G5C6:G16U17_BB A 5 ? B 17 ? A 6 ? B 16 ? 1 A C 6 1_555 B G 16 1_555 A C 7 1_555 B G 15 1_555 0.654 -1.976 3.304 2.052 8.913 32.616 -4.744 -0.813 2.720 15.494 -3.567 33.840 4 AA_C6C7:G15G16_BB A 6 ? B 16 ? A 7 ? B 15 ? 1 A C 7 1_555 B G 15 1_555 A A 8 1_555 B A 14 1_555 0.383 -3.759 3.025 4.900 4.886 70.961 -3.376 -0.179 2.813 4.199 -4.211 71.254 5 AA_C7A8:A14G15_BB A 7 ? B 15 ? A 8 ? B 14 ? 1 A A 8 1_555 B A 14 1_555 A G 9 1_555 B C 13 1_555 -1.630 0.721 3.043 1.173 9.536 -23.428 -4.143 -3.415 2.628 -22.319 2.745 -25.296 6 AA_A8G9:C13A14_BB A 8 ? B 14 ? A 9 ? B 13 ? 1 A G 9 1_555 B C 13 1_555 A C 10 1_555 B G 12 1_555 -0.268 -1.256 3.237 0.989 3.495 37.571 -2.381 0.538 3.104 5.410 -1.531 37.740 7 AA_G9C10:G12C13_BB A 9 ? B 13 ? A 10 ? B 12 ? 1 A G 12 1_555 B C 10 1_555 A C 13 1_555 B G 9 1_555 0.263 -1.254 3.237 -1.006 3.490 37.587 -2.376 -0.532 3.104 5.401 1.557 37.756 8 AA_G12C13:G9C10_BB A 12 ? B 10 ? A 13 ? B 9 ? 1 A C 13 1_555 B G 9 1_555 A A 14 1_555 B A 8 1_555 0.115 3.085 -1.706 166.840 -34.644 -165.764 -1.564 -0.044 -1.629 17.330 83.456 -178.812 9 AA_C13A14:A8G9_BB A 13 ? B 9 ? A 14 ? B 8 ? 1 A A 14 1_555 B A 8 1_555 A G 15 1_555 B C 7 1_555 0.187 -3.859 -2.918 140.986 -100.439 90.233 -2.327 -0.649 -0.383 -50.802 -71.310 175.135 10 AA_A14G15:C7A8_BB A 14 ? B 8 ? A 15 ? B 7 ? 1 A G 15 1_555 B C 7 1_555 A G 16 1_555 B C 6 1_555 -0.654 -1.972 3.301 -2.129 8.802 32.697 -4.712 0.800 2.729 15.274 3.695 33.895 11 AA_G15G16:C6C7_BB A 15 ? B 7 ? A 16 ? B 6 ? 1 A G 16 1_555 B C 6 1_555 A U 17 1_555 B G 5 1_555 -0.068 -1.343 3.065 -0.330 6.494 40.229 -2.580 0.065 2.824 9.368 0.476 40.730 12 AA_G16U17:G5C6_BB A 16 ? B 6 ? A 17 ? B 5 ? 1 A U 17 1_555 B G 5 1_555 A C 18 1_555 B G 4 1_555 0.636 -1.801 2.922 6.110 9.572 24.740 -5.800 -0.097 2.180 20.985 -13.396 27.185 13 AA_U17C18:G4G5_BB A 17 ? B 5 ? A 18 ? B 4 ? 1 A C 18 1_555 B G 4 1_555 A C 19 1_555 B G 3 1_555 -0.414 -1.779 3.411 -1.739 5.387 32.181 -4.099 0.435 3.098 9.624 3.108 32.662 14 AA_C18C19:G3G4_BB A 18 ? B 4 ? A 19 ? B 3 ? # _atom_sites.entry_id 4J50 _atom_sites.fract_transf_matrix[1][1] 0.021581 _atom_sites.fract_transf_matrix[1][2] 0.012460 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024919 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007430 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_