HEADER PROTEIN TRANSPORT 08-FEB-13 4J5M TITLE STRUCTURE OF THE CARGO BINDING DOMAIN FROM HUMAN MYOSIN VB COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCONVENTIONAL MYOSIN-VB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL GLOBULAR TAIL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1119, MYO5B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) (ROSETTA 2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS INTRACELLULAR TRAFFIC, ORGANELLES, VESICLES, HUMAN MYOSIN VB, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.F.Z.NASCIMENTO,D.M.TRINDADE,P.MAHAJAN,G.BERRIDGE,T.KROJER, AUTHOR 2 M.VOLLMAR,C.C.C.TONOLI,L.H.P.ASSIS,N.BURGESS-BROWN,F.VON DELFT, AUTHOR 3 M.T.MURAKAMI REVDAT 4 28-FEB-24 4J5M 1 REMARK REVDAT 3 11-DEC-13 4J5M 1 JRNL REVDAT 2 23-OCT-13 4J5M 1 JRNL REVDAT 1 09-OCT-13 4J5M 0 JRNL AUTH A.F.NASCIMENTO,D.M.TRINDADE,C.C.TONOLI,P.O.DE GIUSEPPE, JRNL AUTH 2 L.H.ASSIS,R.V.HONORATO,P.S.DE OLIVEIRA,P.MAHAJAN, JRNL AUTH 3 N.A.BURGESS-BROWN,F.VON DELFT,R.E.LARSON,M.T.MURAKAMI JRNL TITL STRUCTURAL INSIGHTS INTO FUNCTIONAL OVERLAPPING AND JRNL TITL 2 DIFFERENTIATION AMONG MYOSIN V MOTORS. JRNL REF J.BIOL.CHEM. V. 288 34131 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24097982 JRNL DOI 10.1074/JBC.M113.507202 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.190 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0199 - 5.3169 0.98 2664 125 0.1896 0.2183 REMARK 3 2 5.3169 - 4.2209 0.98 2678 139 0.1517 0.2131 REMARK 3 3 4.2209 - 3.6876 0.98 2616 149 0.1525 0.2044 REMARK 3 4 3.6876 - 3.3505 0.98 2663 140 0.1784 0.2223 REMARK 3 5 3.3505 - 3.1104 0.98 2691 131 0.1849 0.1695 REMARK 3 6 3.1104 - 2.9270 0.98 2657 151 0.1891 0.2402 REMARK 3 7 2.9270 - 2.7804 0.99 2664 159 0.1889 0.2443 REMARK 3 8 2.7804 - 2.6594 0.99 2652 166 0.1910 0.2689 REMARK 3 9 2.6594 - 2.5570 0.99 2703 124 0.1977 0.2421 REMARK 3 10 2.5570 - 2.4688 0.98 2615 154 0.1955 0.2240 REMARK 3 11 2.4688 - 2.3916 0.98 2672 150 0.2150 0.2438 REMARK 3 12 2.3916 - 2.3233 0.99 2720 113 0.2125 0.2621 REMARK 3 13 2.3233 - 2.2621 0.99 2638 138 0.2170 0.2369 REMARK 3 14 2.2621 - 2.2069 0.99 2722 158 0.2230 0.2754 REMARK 3 15 2.2069 - 2.1567 0.99 2650 137 0.2513 0.3071 REMARK 3 16 2.1567 - 2.1108 0.93 2505 125 0.2632 0.2766 REMARK 3 17 2.1108 - 2.0700 0.82 2239 143 0.2864 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 43.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.64660 REMARK 3 B22 (A**2) : -3.91500 REMARK 3 B33 (A**2) : 0.26840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3029 REMARK 3 ANGLE : 0.992 4102 REMARK 3 CHIRALITY : 0.065 476 REMARK 3 PLANARITY : 0.004 526 REMARK 3 DIHEDRAL : 15.886 1153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1459:1499) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9116 16.8182 77.3568 REMARK 3 T TENSOR REMARK 3 T11: 0.3860 T22: 0.2663 REMARK 3 T33: 0.1673 T12: -0.0051 REMARK 3 T13: 0.1149 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.5216 L22: 5.3446 REMARK 3 L33: 4.4053 L12: -1.4796 REMARK 3 L13: 0.9853 L23: -2.6770 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.4761 S13: -0.2836 REMARK 3 S21: 1.0574 S22: 0.3321 S23: 0.5738 REMARK 3 S31: -0.4855 S32: -0.1556 S33: -0.1848 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1500:1622) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5663 20.7946 62.6156 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1750 REMARK 3 T33: 0.1101 T12: -0.0247 REMARK 3 T13: 0.0071 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.7742 L22: 5.4299 REMARK 3 L33: 1.5044 L12: 1.2884 REMARK 3 L13: -0.4090 L23: -2.2713 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: -0.0950 S13: -0.1013 REMARK 3 S21: 0.1592 S22: 0.0552 S23: 0.0858 REMARK 3 S31: 0.0195 S32: -0.0551 S33: -0.0457 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1623:1725) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2905 47.9277 53.8443 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1427 REMARK 3 T33: 0.1170 T12: -0.0321 REMARK 3 T13: -0.0057 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.4353 L22: 3.1316 REMARK 3 L33: 2.5621 L12: 0.5982 REMARK 3 L13: -0.3210 L23: -1.5921 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: -0.0784 S13: 0.0536 REMARK 3 S21: 0.6030 S22: -0.1213 S23: -0.1488 REMARK 3 S31: -0.4876 S32: 0.0400 S33: 0.0057 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1726:1790) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5251 54.6806 38.9543 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1654 REMARK 3 T33: 0.1987 T12: 0.0038 REMARK 3 T13: 0.0416 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.9423 L22: 3.8482 REMARK 3 L33: 3.6506 L12: 1.5277 REMARK 3 L13: -1.4994 L23: -2.4127 REMARK 3 S TENSOR REMARK 3 S11: 0.1198 S12: -0.0136 S13: 0.0565 REMARK 3 S21: 0.1881 S22: -0.0741 S23: -0.2123 REMARK 3 S31: -0.3180 S32: -0.0276 S33: -0.0229 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1791:1810) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6790 49.9583 26.1114 REMARK 3 T TENSOR REMARK 3 T11: 0.4140 T22: 0.2730 REMARK 3 T33: 0.3997 T12: -0.1272 REMARK 3 T13: 0.1729 T23: -0.0841 REMARK 3 L TENSOR REMARK 3 L11: 4.2722 L22: 1.1620 REMARK 3 L33: 3.8907 L12: 1.6961 REMARK 3 L13: -2.1428 L23: 0.3167 REMARK 3 S TENSOR REMARK 3 S11: -1.0633 S12: 0.4048 S13: -1.1141 REMARK 3 S21: -0.7278 S22: 0.4636 S23: -0.7243 REMARK 3 S31: 1.1718 S32: -0.3533 S33: 0.3734 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1811:1830) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2951 29.4730 53.5832 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.1232 REMARK 3 T33: 0.1368 T12: -0.0043 REMARK 3 T13: -0.0249 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.2473 L22: 4.3998 REMARK 3 L33: 5.3785 L12: 0.7127 REMARK 3 L13: -0.4101 L23: -4.4841 REMARK 3 S TENSOR REMARK 3 S11: -0.2377 S12: -0.0263 S13: -0.1045 REMARK 3 S21: 0.3834 S22: -0.0894 S23: -0.5912 REMARK 3 S31: -0.3538 S32: 0.2056 S33: 0.3244 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 1831:1848) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3567 18.2383 80.6893 REMARK 3 T TENSOR REMARK 3 T11: 0.6073 T22: 0.4636 REMARK 3 T33: 0.2250 T12: -0.0021 REMARK 3 T13: 0.1563 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 6.7278 L22: 5.5998 REMARK 3 L33: 3.0127 L12: -4.4266 REMARK 3 L13: 1.3413 L23: -2.5719 REMARK 3 S TENSOR REMARK 3 S11: -0.4432 S12: -1.2185 S13: 0.2706 REMARK 3 S21: 1.4964 S22: 0.4843 S23: 0.1857 REMARK 3 S31: -0.9161 S32: 0.1372 S33: -0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ROSETTA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M SODIUM NITRATE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.90850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.90850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.54650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.54650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.90850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.54650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.90850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.54650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2194 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1453 REMARK 465 ASN A 1454 REMARK 465 ARG A 1455 REMARK 465 GLN A 1456 REMARK 465 VAL A 1457 REMARK 465 THR A 1458 REMARK 465 ASN A 1624 REMARK 465 GLU A 1625 REMARK 465 SER A 1626 REMARK 465 ILE A 1627 REMARK 465 GLN A 1628 REMARK 465 GLY A 1629 REMARK 465 LEU A 1630 REMARK 465 SER A 1631 REMARK 465 GLY A 1632 REMARK 465 VAL A 1633 REMARK 465 LYS A 1634 REMARK 465 PRO A 1635 REMARK 465 THR A 1636 REMARK 465 GLY A 1637 REMARK 465 TYR A 1638 REMARK 465 ARG A 1639 REMARK 465 LYS A 1640 REMARK 465 ARG A 1641 REMARK 465 SER A 1642 REMARK 465 SER A 1643 REMARK 465 SER A 1644 REMARK 465 MET A 1645 REMARK 465 ALA A 1646 REMARK 465 ASP A 1647 REMARK 465 GLY A 1648 REMARK 465 ASP A 1649 REMARK 465 ASN A 1650 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 1786 CD REMARK 480 GLU A 1787 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 1786 O HOH A 2050 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1485 -68.96 -129.65 REMARK 500 HIS A1539 48.60 -106.90 REMARK 500 CYS A1764 49.20 -91.15 REMARK 500 ASP A1806 170.98 61.49 REMARK 500 PRO A1807 -132.48 -71.19 REMARK 500 GLN A1808 -53.23 -142.97 REMARK 500 ASP A1832 -16.72 167.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J5L RELATED DB: PDB DBREF 4J5M A 1453 1848 UNP Q9ULV0 MYO5B_HUMAN 1453 1848 SEQRES 1 A 396 LEU ASN ARG GLN VAL THR VAL GLN ARG LYS GLU LYS ASP SEQRES 2 A 396 PHE GLN GLY MET LEU GLU TYR HIS LYS GLU ASP GLU ALA SEQRES 3 A 396 LEU LEU ILE ARG ASN LEU VAL THR ASP LEU LYS PRO GLN SEQRES 4 A 396 MET LEU SER GLY THR VAL PRO CYS LEU PRO ALA TYR ILE SEQRES 5 A 396 LEU TYR MET CYS ILE ARG HIS ALA ASP TYR THR ASN ASP SEQRES 6 A 396 ASP LEU LYS VAL HIS SER LEU LEU THR SER THR ILE ASN SEQRES 7 A 396 GLY ILE LYS LYS VAL LEU LYS LYS HIS ASN ASP ASP PHE SEQRES 8 A 396 GLU MET THR SER PHE TRP LEU SER ASN THR CYS ARG LEU SEQRES 9 A 396 LEU HIS CYS LEU LYS GLN TYR SER GLY ASP GLU GLY PHE SEQRES 10 A 396 MET THR GLN ASN THR ALA LYS GLN ASN GLU HIS CYS LEU SEQRES 11 A 396 LYS ASN PHE ASP LEU THR GLU TYR ARG GLN VAL LEU SER SEQRES 12 A 396 ASP LEU SER ILE GLN ILE TYR GLN GLN LEU ILE LYS ILE SEQRES 13 A 396 ALA GLU GLY VAL LEU GLN PRO MET ILE VAL SER ALA MET SEQRES 14 A 396 LEU GLU ASN GLU SER ILE GLN GLY LEU SER GLY VAL LYS SEQRES 15 A 396 PRO THR GLY TYR ARG LYS ARG SER SER SER MET ALA ASP SEQRES 16 A 396 GLY ASP ASN SER TYR CYS LEU GLU ALA ILE ILE ARG GLN SEQRES 17 A 396 MET ASN ALA PHE HIS THR VAL MET CYS ASP GLN GLY LEU SEQRES 18 A 396 ASP PRO GLU ILE ILE LEU GLN VAL PHE LYS GLN LEU PHE SEQRES 19 A 396 TYR MET ILE ASN ALA VAL THR LEU ASN ASN LEU LEU LEU SEQRES 20 A 396 ARG LYS ASP VAL CYS SER TRP SER THR GLY MET GLN LEU SEQRES 21 A 396 ARG TYR ASN ILE SER GLN LEU GLU GLU TRP LEU ARG GLY SEQRES 22 A 396 ARG ASN LEU HIS GLN SER GLY ALA VAL GLN THR MET GLU SEQRES 23 A 396 PRO LEU ILE GLN ALA ALA GLN LEU LEU GLN LEU LYS LYS SEQRES 24 A 396 LYS THR GLN GLU ASP ALA GLU ALA ILE CYS SER LEU CYS SEQRES 25 A 396 THR SER LEU SER THR GLN GLN ILE VAL LYS ILE LEU ASN SEQRES 26 A 396 LEU TYR THR PRO LEU ASN GLU PHE GLU GLU ARG VAL THR SEQRES 27 A 396 VAL ALA PHE ILE ARG THR ILE GLN ALA GLN LEU GLN GLU SEQRES 28 A 396 ARG ASN ASP PRO GLN GLN LEU LEU LEU ASP ALA LYS HIS SEQRES 29 A 396 MET PHE PRO VAL LEU PHE PRO PHE ASN PRO SER SER LEU SEQRES 30 A 396 THR MET ASP SER ILE HIS ILE PRO ALA CYS LEU ASN LEU SEQRES 31 A 396 GLU PHE LEU ASN GLU VAL HET NO3 A1901 4 HET NO3 A1902 4 HETNAM NO3 NITRATE ION FORMUL 2 NO3 2(N O3 1-) FORMUL 4 HOH *206(H2 O) HELIX 1 1 HIS A 1473 GLU A 1475 5 3 HELIX 2 2 ASP A 1476 VAL A 1485 1 10 HELIX 3 3 LYS A 1489 SER A 1494 5 6 HELIX 4 4 CYS A 1499 THR A 1515 1 17 HELIX 5 5 ASP A 1517 HIS A 1539 1 23 HELIX 6 6 ASP A 1542 TYR A 1563 1 22 HELIX 7 7 ASP A 1566 MET A 1570 5 5 HELIX 8 8 THR A 1574 GLU A 1579 1 6 HELIX 9 9 LEU A 1587 GLN A 1614 1 28 HELIX 10 10 MET A 1616 GLU A 1623 1 8 HELIX 11 11 CYS A 1653 GLN A 1671 1 19 HELIX 12 12 ASP A 1674 ARG A 1700 1 27 HELIX 13 13 LYS A 1701 CYS A 1704 5 4 HELIX 14 14 SER A 1705 ARG A 1726 1 22 HELIX 15 15 GLY A 1732 MET A 1737 1 6 HELIX 16 16 MET A 1737 LEU A 1747 1 11 HELIX 17 17 THR A 1753 CYS A 1764 1 12 HELIX 18 18 SER A 1768 TYR A 1779 1 12 HELIX 19 19 THR A 1790 LEU A 1801 1 12 HELIX 20 20 PRO A 1837 ASN A 1841 5 5 SHEET 1 A 2 MET A1469 GLU A1471 0 SHEET 2 A 2 ASN A1846 VAL A1848 -1 O ASN A1846 N GLU A1471 CISPEP 1 SER A 1494 GLY A 1495 0 4.21 SITE 1 AC1 8 VAL A1692 ASN A1695 ASN A1696 LEU A1810 SITE 2 AC1 8 LEU A1811 HOH A2082 HOH A2083 HOH A2188 SITE 1 AC2 5 GLN A1603 MET A1817 PHE A1818 HOH A2002 SITE 2 AC2 5 HOH A2063 CRYST1 69.093 78.200 151.817 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006587 0.00000