HEADER TRANSFERASE 10-FEB-13 4J5U TITLE X-RAY CRYSTAL STRUCTURE OF A SERINE HYDROXYMETHYLTRANSFERASE WITH TITLE 2 COVALENTLY BOUND PLP FROM RICKETTSIA RICKETTSII STR. SHEILA SMITH COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SHMT, SERINE METHYLASE; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA RICKETTSII; SOURCE 3 ORGANISM_TAXID: 392021; SOURCE 4 STRAIN: SHEILA SMITH; SOURCE 5 GENE: GLYA, A1G_06305; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, TRANSFERASE, SSGCID EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-DEC-23 4J5U 1 REMARK REVDAT 2 20-SEP-23 4J5U 1 LINK REVDAT 1 13-MAR-13 4J5U 0 JRNL AUTH J.W.FAIRMAN,J.A.ABENDROTH,T.E.EDWARDS,D.LORIMER JRNL TITL X-RAY CRYSTAL STRUCTURE OF A SERINE HYDROXYMETHYLTRANSFERASE JRNL TITL 2 WITH COVALENTLY BOUND PLP FROM RICKETTSIA RICKETTSII STR. JRNL TITL 3 SHEILA SMITH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1255 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 81155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6250 - 5.1916 0.96 2633 139 0.1422 0.1560 REMARK 3 2 5.1916 - 4.1334 0.99 2694 127 0.1252 0.1614 REMARK 3 3 4.1334 - 3.6146 0.98 2682 141 0.1414 0.1556 REMARK 3 4 3.6146 - 3.2858 1.00 2692 134 0.1452 0.1563 REMARK 3 5 3.2858 - 3.0512 1.00 2675 162 0.1598 0.1898 REMARK 3 6 3.0512 - 2.8719 1.00 2673 137 0.1641 0.2020 REMARK 3 7 2.8719 - 2.7284 1.00 2689 153 0.1641 0.2079 REMARK 3 8 2.7284 - 2.6100 1.00 2711 136 0.1674 0.2215 REMARK 3 9 2.6100 - 2.5097 1.00 2649 150 0.1690 0.1876 REMARK 3 10 2.5097 - 2.4233 1.00 2667 152 0.1610 0.1945 REMARK 3 11 2.4233 - 2.3476 1.00 2635 157 0.1652 0.2063 REMARK 3 12 2.3476 - 2.2806 0.99 2695 139 0.1779 0.2161 REMARK 3 13 2.2806 - 2.2207 0.96 2579 113 0.3277 0.3985 REMARK 3 14 2.2207 - 2.1665 0.99 2681 131 0.1805 0.1926 REMARK 3 15 2.1665 - 2.1173 1.00 2673 134 0.1688 0.2221 REMARK 3 16 2.1173 - 2.0723 1.00 2659 143 0.1544 0.2250 REMARK 3 17 2.0723 - 2.0309 1.00 2699 164 0.1641 0.2161 REMARK 3 18 2.0309 - 1.9926 1.00 2657 132 0.1609 0.1835 REMARK 3 19 1.9926 - 1.9571 1.00 2662 144 0.1876 0.2448 REMARK 3 20 1.9571 - 1.9239 0.95 2560 152 0.2535 0.3230 REMARK 3 21 1.9239 - 1.8929 0.96 2562 128 0.3951 0.5473 REMARK 3 22 1.8929 - 1.8638 0.98 2684 133 0.2319 0.2961 REMARK 3 23 1.8638 - 1.8364 1.00 2662 130 0.1866 0.2213 REMARK 3 24 1.8364 - 1.8106 1.00 2677 138 0.1740 0.2434 REMARK 3 25 1.8106 - 1.7861 1.00 2691 154 0.1720 0.2377 REMARK 3 26 1.7861 - 1.7630 1.00 2685 136 0.1754 0.2548 REMARK 3 27 1.7630 - 1.7409 1.00 2633 148 0.1760 0.2402 REMARK 3 28 1.7409 - 1.7200 0.99 2706 120 0.1731 0.1918 REMARK 3 29 1.7200 - 1.7000 0.96 2533 130 0.1878 0.2383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6701 REMARK 3 ANGLE : 1.145 9134 REMARK 3 CHIRALITY : 0.076 1030 REMARK 3 PLANARITY : 0.006 1202 REMARK 3 DIHEDRAL : 14.033 2458 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:420 ) OR ( CHAIN B AND RESID REMARK 3 1:420 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1982 13.8831 15.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0942 REMARK 3 T33: 0.0990 T12: 0.0012 REMARK 3 T13: -0.0042 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.3688 L22: 0.6530 REMARK 3 L33: 0.4671 L12: 0.0993 REMARK 3 L13: -0.0308 L23: -0.0199 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0082 S13: -0.0082 REMARK 3 S21: 0.0033 S22: 0.0357 S23: 0.0507 REMARK 3 S31: 0.0089 S32: -0.0255 S33: -0.0228 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28357 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ECD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M REMARK 280 MES:NAOH PH 6.5, 10% (W/V) PEG 4000, 22.4 MG/ML PROTEIN, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.64000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LEU A 331 CG CD1 CD2 REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 GLU A 414 CG CD OE1 OE2 REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 GLU B 396 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 878 O HOH A 880 2.11 REMARK 500 O HOH A 878 O HOH A 879 2.16 REMARK 500 O GLY A 305 O HOH A 878 2.18 REMARK 500 O HOH A 886 O HOH B 573 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 87 O HOH B 551 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 50 4.58 -68.93 REMARK 500 ALA A 56 43.62 -142.93 REMARK 500 LLP A 230 -130.83 82.15 REMARK 500 ASN A 315 -145.31 -131.30 REMARK 500 PHE A 350 -2.03 75.28 REMARK 500 THR A 358 165.84 66.16 REMARK 500 LEU B 50 3.38 -68.86 REMARK 500 LYS B 62 48.86 -141.26 REMARK 500 LLP B 230 -137.72 79.44 REMARK 500 THR B 310 -0.81 69.21 REMARK 500 ASN B 315 -149.38 -130.72 REMARK 500 PHE B 350 -3.26 76.31 REMARK 500 THR B 358 167.67 64.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RIRIA.00008.A RELATED DB: TARGETTRACK DBREF 4J5U A 1 420 UNP A8GTI9 GLYA_RICRS 1 420 DBREF 4J5U B 1 420 UNP A8GTI9 GLYA_RICRS 1 420 SEQRES 1 A 420 MET ASN ILE PHE ASN ASN ASN LEU HIS GLU THR ASP LYS SEQRES 2 A 420 GLU ILE ASN GLU ILE ILE LYS HIS GLU LYS LEU ARG GLN SEQRES 3 A 420 SER SER VAL ILE GLU LEU ILE ALA SER GLU ASN PHE VAL SEQRES 4 A 420 SER PRO ALA VAL LEU GLU ALA GLN GLY ALA LEU LEU THR SEQRES 5 A 420 ASN LYS TYR ALA GLU GLY TYR PRO SER LYS ARG PHE TYR SEQRES 6 A 420 ASN GLY CYS GLU GLU VAL ASP LYS ALA GLU ASN LEU ALA SEQRES 7 A 420 ILE GLU ARG VAL LYS LYS LEU PHE ASN CYS LYS TYR ALA SEQRES 8 A 420 ASN VAL GLN PRO HIS SER GLY SER GLN ALA ASN GLN ALA SEQRES 9 A 420 VAL TYR LEU ALA LEU LEU GLN PRO GLY ASP THR VAL LEU SEQRES 10 A 420 GLY MET SER LEU ASP SER GLY GLY HIS LEU THR HIS GLY SEQRES 11 A 420 ALA ALA PRO ASN MET SER GLY LYS TRP PHE ASN ALA VAL SEQRES 12 A 420 SER TYR SER VAL ASN LYS GLU THR TYR LEU ILE ASP TYR SEQRES 13 A 420 ASP GLU ILE GLU ARG LEU ALA ASP LEU HIS LYS PRO LYS SEQRES 14 A 420 LEU LEU ILE ALA GLY PHE SER ALA TYR PRO ARG ASN ILE SEQRES 15 A 420 ASP PHE ALA LYS PHE ARG GLU ILE VAL ASP LYS VAL GLY SEQRES 16 A 420 ALA TYR PHE MET ALA ASP ILE ALA HIS ILE ALA GLY LEU SEQRES 17 A 420 VAL ALA THR GLY GLU HIS GLN SER PRO ILE PRO TYR ALA SEQRES 18 A 420 HIS ALA VAL THR SER THR THR HIS LLP THR LEU ARG GLY SEQRES 19 A 420 PRO ARG GLY GLY LEU ILE LEU SER ASN ASP GLU GLU ILE SEQRES 20 A 420 GLY HIS LYS ILE ASN SER ALA LEU PHE PRO GLY LEU GLN SEQRES 21 A 420 GLY GLY PRO LEU MET HIS ILE ILE ALA ALA LYS ALA VAL SEQRES 22 A 420 ALA PHE LEU GLU ASN LEU GLN PRO GLU TYR LYS SER TYR SEQRES 23 A 420 ILE GLN GLN VAL ILE SER ASN ALA LYS ALA LEU ALA SER SEQRES 24 A 420 SER LEU GLN GLU ARG GLY TYR ASP ILE LEU THR GLY GLY SEQRES 25 A 420 THR ASP ASN HIS ILE VAL LEU VAL ASP LEU ARG LYS ASP SEQRES 26 A 420 GLY ILE THR GLY LYS LEU ALA ALA ASN SER LEU ASP ARG SEQRES 27 A 420 ALA GLY ILE THR CYS ASN LYS ASN ALA ILE PRO PHE ASP SEQRES 28 A 420 GLU THR SER PRO PHE ILE THR SER GLY ILE ARG LEU GLY SEQRES 29 A 420 THR PRO ALA CYS THR THR ARG GLY PHE LYS GLU LYS ASP SEQRES 30 A 420 PHE VAL LEU VAL GLY HIS MET VAL ALA ASP ILE LEU ASP SEQRES 31 A 420 GLY LEU LYS ASN ASN GLU ASP ASN SER ALA LEU GLU GLN SEQRES 32 A 420 GLN VAL LEU ASN GLU VAL THR LYS LEU ILE GLU LEU PHE SEQRES 33 A 420 PRO PHE TYR GLY SEQRES 1 B 420 MET ASN ILE PHE ASN ASN ASN LEU HIS GLU THR ASP LYS SEQRES 2 B 420 GLU ILE ASN GLU ILE ILE LYS HIS GLU LYS LEU ARG GLN SEQRES 3 B 420 SER SER VAL ILE GLU LEU ILE ALA SER GLU ASN PHE VAL SEQRES 4 B 420 SER PRO ALA VAL LEU GLU ALA GLN GLY ALA LEU LEU THR SEQRES 5 B 420 ASN LYS TYR ALA GLU GLY TYR PRO SER LYS ARG PHE TYR SEQRES 6 B 420 ASN GLY CYS GLU GLU VAL ASP LYS ALA GLU ASN LEU ALA SEQRES 7 B 420 ILE GLU ARG VAL LYS LYS LEU PHE ASN CYS LYS TYR ALA SEQRES 8 B 420 ASN VAL GLN PRO HIS SER GLY SER GLN ALA ASN GLN ALA SEQRES 9 B 420 VAL TYR LEU ALA LEU LEU GLN PRO GLY ASP THR VAL LEU SEQRES 10 B 420 GLY MET SER LEU ASP SER GLY GLY HIS LEU THR HIS GLY SEQRES 11 B 420 ALA ALA PRO ASN MET SER GLY LYS TRP PHE ASN ALA VAL SEQRES 12 B 420 SER TYR SER VAL ASN LYS GLU THR TYR LEU ILE ASP TYR SEQRES 13 B 420 ASP GLU ILE GLU ARG LEU ALA ASP LEU HIS LYS PRO LYS SEQRES 14 B 420 LEU LEU ILE ALA GLY PHE SER ALA TYR PRO ARG ASN ILE SEQRES 15 B 420 ASP PHE ALA LYS PHE ARG GLU ILE VAL ASP LYS VAL GLY SEQRES 16 B 420 ALA TYR PHE MET ALA ASP ILE ALA HIS ILE ALA GLY LEU SEQRES 17 B 420 VAL ALA THR GLY GLU HIS GLN SER PRO ILE PRO TYR ALA SEQRES 18 B 420 HIS ALA VAL THR SER THR THR HIS LLP THR LEU ARG GLY SEQRES 19 B 420 PRO ARG GLY GLY LEU ILE LEU SER ASN ASP GLU GLU ILE SEQRES 20 B 420 GLY HIS LYS ILE ASN SER ALA LEU PHE PRO GLY LEU GLN SEQRES 21 B 420 GLY GLY PRO LEU MET HIS ILE ILE ALA ALA LYS ALA VAL SEQRES 22 B 420 ALA PHE LEU GLU ASN LEU GLN PRO GLU TYR LYS SER TYR SEQRES 23 B 420 ILE GLN GLN VAL ILE SER ASN ALA LYS ALA LEU ALA SER SEQRES 24 B 420 SER LEU GLN GLU ARG GLY TYR ASP ILE LEU THR GLY GLY SEQRES 25 B 420 THR ASP ASN HIS ILE VAL LEU VAL ASP LEU ARG LYS ASP SEQRES 26 B 420 GLY ILE THR GLY LYS LEU ALA ALA ASN SER LEU ASP ARG SEQRES 27 B 420 ALA GLY ILE THR CYS ASN LYS ASN ALA ILE PRO PHE ASP SEQRES 28 B 420 GLU THR SER PRO PHE ILE THR SER GLY ILE ARG LEU GLY SEQRES 29 B 420 THR PRO ALA CYS THR THR ARG GLY PHE LYS GLU LYS ASP SEQRES 30 B 420 PHE VAL LEU VAL GLY HIS MET VAL ALA ASP ILE LEU ASP SEQRES 31 B 420 GLY LEU LYS ASN ASN GLU ASP ASN SER ALA LEU GLU GLN SEQRES 32 B 420 GLN VAL LEU ASN GLU VAL THR LYS LEU ILE GLU LEU PHE SEQRES 33 B 420 PRO PHE TYR GLY MODRES 4J5U LLP A 230 LYS MODRES 4J5U LLP B 230 LYS HET LLP A 230 24 HET LLP B 230 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *771(H2 O) HELIX 1 1 ASN A 2 ASN A 6 5 5 HELIX 2 2 ASN A 7 ASP A 12 1 6 HELIX 3 3 ASP A 12 VAL A 29 1 18 HELIX 4 4 SER A 40 GLY A 48 1 9 HELIX 5 5 ALA A 49 LYS A 54 5 6 HELIX 6 6 CYS A 68 ASN A 87 1 20 HELIX 7 7 SER A 97 LEU A 110 1 14 HELIX 8 8 LEU A 121 GLY A 124 5 4 HELIX 9 9 HIS A 126 GLY A 130 5 5 HELIX 10 10 ASN A 134 TRP A 139 1 6 HELIX 11 11 ASP A 155 LYS A 167 1 13 HELIX 12 12 ASP A 183 GLY A 195 1 13 HELIX 13 13 ILE A 205 THR A 211 1 7 HELIX 14 14 HIS A 229 ARG A 233 5 5 HELIX 15 15 ASP A 244 PHE A 256 1 13 HELIX 16 16 LEU A 264 LEU A 279 1 16 HELIX 17 17 GLN A 280 ARG A 304 1 25 HELIX 18 18 THR A 310 GLY A 312 5 3 HELIX 19 19 ARG A 323 GLY A 326 5 4 HELIX 20 20 THR A 328 ALA A 339 1 12 HELIX 21 21 THR A 365 ARG A 371 1 7 HELIX 22 22 LYS A 374 ASN A 395 1 22 HELIX 23 23 ASN A 398 GLU A 414 1 17 HELIX 24 24 ASN B 2 ASN B 6 5 5 HELIX 25 25 ASN B 7 ASP B 12 1 6 HELIX 26 26 ASP B 12 VAL B 29 1 18 HELIX 27 27 SER B 40 GLY B 48 1 9 HELIX 28 28 ALA B 49 LYS B 54 5 6 HELIX 29 29 CYS B 68 ASN B 87 1 20 HELIX 30 30 SER B 97 LEU B 110 1 14 HELIX 31 31 HIS B 126 GLY B 130 5 5 HELIX 32 32 ASN B 134 TRP B 139 1 6 HELIX 33 33 ASP B 155 LYS B 167 1 13 HELIX 34 34 ASP B 183 VAL B 194 1 12 HELIX 35 35 ILE B 205 THR B 211 1 7 HELIX 36 36 HIS B 229 ARG B 233 5 5 HELIX 37 37 ASP B 244 PHE B 256 1 13 HELIX 38 38 LEU B 264 GLN B 280 1 17 HELIX 39 39 GLN B 280 ARG B 304 1 25 HELIX 40 40 THR B 310 GLY B 312 5 3 HELIX 41 41 ARG B 323 GLY B 326 5 4 HELIX 42 42 THR B 328 ALA B 339 1 12 HELIX 43 43 THR B 365 ARG B 371 1 7 HELIX 44 44 LYS B 374 ASN B 395 1 22 HELIX 45 45 ASN B 398 GLU B 414 1 17 SHEET 1 A 2 ILE A 30 GLU A 31 0 SHEET 2 A 2 ILE A 341 THR A 342 1 O THR A 342 N ILE A 30 SHEET 1 B 2 GLY A 58 TYR A 59 0 SHEET 2 B 2 LYS A 62 ARG A 63 -1 O LYS A 62 N TYR A 59 SHEET 1 C 7 TYR A 90 ASN A 92 0 SHEET 2 C 7 GLY A 238 SER A 242 -1 O ILE A 240 N ASN A 92 SHEET 3 C 7 ALA A 223 THR A 227 -1 N VAL A 224 O LEU A 241 SHEET 4 C 7 TYR A 197 ASP A 201 1 N ALA A 200 O THR A 225 SHEET 5 C 7 LEU A 170 GLY A 174 1 N ALA A 173 O ASP A 201 SHEET 6 C 7 THR A 115 MET A 119 1 N LEU A 117 O ILE A 172 SHEET 7 C 7 ASN A 141 TYR A 145 1 O VAL A 143 N VAL A 116 SHEET 1 D 4 ASP A 307 ILE A 308 0 SHEET 2 D 4 ILE A 317 ASP A 321 -1 O ASP A 321 N ASP A 307 SHEET 3 D 4 GLY A 360 GLY A 364 -1 O LEU A 363 N VAL A 318 SHEET 4 D 4 ASN A 344 LYS A 345 -1 N ASN A 344 O ARG A 362 SHEET 1 E 2 ILE B 30 GLU B 31 0 SHEET 2 E 2 ILE B 341 THR B 342 1 O THR B 342 N ILE B 30 SHEET 1 F 2 GLY B 58 TYR B 59 0 SHEET 2 F 2 LYS B 62 ARG B 63 -1 O LYS B 62 N TYR B 59 SHEET 1 G 7 TYR B 90 ASN B 92 0 SHEET 2 G 7 GLY B 238 SER B 242 -1 O ILE B 240 N ASN B 92 SHEET 3 G 7 ALA B 223 THR B 227 -1 N VAL B 224 O LEU B 241 SHEET 4 G 7 TYR B 197 ASP B 201 1 N ALA B 200 O THR B 225 SHEET 5 G 7 LEU B 170 GLY B 174 1 N ALA B 173 O ASP B 201 SHEET 6 G 7 THR B 115 MET B 119 1 N LEU B 117 O ILE B 172 SHEET 7 G 7 ASN B 141 TYR B 145 1 O VAL B 143 N VAL B 116 SHEET 1 H 4 ASP B 307 ILE B 308 0 SHEET 2 H 4 ILE B 317 ASP B 321 -1 O ASP B 321 N ASP B 307 SHEET 3 H 4 GLY B 360 GLY B 364 -1 O LEU B 363 N VAL B 318 SHEET 4 H 4 ASN B 344 LYS B 345 -1 N ASN B 344 O ARG B 362 LINK C HIS A 229 N LLP A 230 1555 1555 1.33 LINK C LLP A 230 N THR A 231 1555 1555 1.33 LINK C HIS B 229 N LLP B 230 1555 1555 1.33 LINK C LLP B 230 N THR B 231 1555 1555 1.33 CISPEP 1 PHE A 256 PRO A 257 0 10.65 CISPEP 2 PHE B 256 PRO B 257 0 8.53 CRYST1 56.270 113.280 65.910 90.00 114.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017771 0.000000 0.008251 0.00000 SCALE2 0.000000 0.008828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016728 0.00000