HEADER RNA BINDING PROTEIN 11-FEB-13 4J5Y TITLE CRYSTAL STRUCTURE OF HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TITLE 2 ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HFQ; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: HFQ, PA4944; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS LSM, RNA BINDING PROTEIN, RNA CHAPERONE, SRNA, MRNA EXPDTA X-RAY DIFFRACTION AUTHOR V.MURINA,N.LEKONTSEVA,A.NIKULIN REVDAT 3 20-SEP-23 4J5Y 1 REMARK LINK REVDAT 2 21-AUG-13 4J5Y 1 JRNL REVDAT 1 31-JUL-13 4J5Y 0 JRNL AUTH V.MURINA,N.LEKONTSEVA,A.NIKULIN JRNL TITL HFQ BINDS RIBONUCLEOTIDES IN THREE DIFFERENT RNA-BINDING JRNL TITL 2 SITES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1504 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23897473 JRNL DOI 10.1107/S090744491301010X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 28097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5751 - 4.4977 0.93 2761 137 0.1595 0.2088 REMARK 3 2 4.4977 - 3.5770 0.95 2704 133 0.1548 0.2153 REMARK 3 3 3.5770 - 3.1270 0.96 2690 164 0.1701 0.2506 REMARK 3 4 3.1270 - 2.8420 0.97 2695 137 0.1943 0.2768 REMARK 3 5 2.8420 - 2.6388 0.97 2676 152 0.2019 0.2850 REMARK 3 6 2.6388 - 2.4836 0.97 2688 137 0.2081 0.2784 REMARK 3 7 2.4836 - 2.3594 0.97 2686 145 0.1960 0.2684 REMARK 3 8 2.3594 - 2.2568 0.97 2669 152 0.2082 0.2707 REMARK 3 9 2.2568 - 2.1701 0.98 2664 152 0.2219 0.2862 REMARK 3 10 2.1701 - 2.0953 0.88 2436 119 0.2552 0.3238 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3551 REMARK 3 ANGLE : 1.294 4861 REMARK 3 CHIRALITY : 0.078 566 REMARK 3 PLANARITY : 0.006 577 REMARK 3 DIHEDRAL : 15.596 1366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077637. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : HELIOS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.095 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.1_1168 REMARK 200 STARTING MODEL: PDB ENTRY 1U1T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM SULPHATE, 200 MM NACL, REMARK 280 50 MM TRIS-HCL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 ASP A 74 REMARK 465 GLN A 75 REMARK 465 PRO A 76 REMARK 465 ALA A 77 REMARK 465 GLU A 78 REMARK 465 PRO A 79 REMARK 465 GLY A 80 REMARK 465 ASN A 81 REMARK 465 ALA A 82 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 SER B 72 REMARK 465 GLY B 73 REMARK 465 ASP B 74 REMARK 465 GLN B 75 REMARK 465 PRO B 76 REMARK 465 ALA B 77 REMARK 465 GLU B 78 REMARK 465 PRO B 79 REMARK 465 GLY B 80 REMARK 465 ASN B 81 REMARK 465 ALA B 82 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 SER C 72 REMARK 465 GLY C 73 REMARK 465 ASP C 74 REMARK 465 GLN C 75 REMARK 465 PRO C 76 REMARK 465 ALA C 77 REMARK 465 GLU C 78 REMARK 465 PRO C 79 REMARK 465 GLY C 80 REMARK 465 ASN C 81 REMARK 465 ALA C 82 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 GLY D 4 REMARK 465 GLY D 73 REMARK 465 ASP D 74 REMARK 465 GLN D 75 REMARK 465 PRO D 76 REMARK 465 ALA D 77 REMARK 465 GLU D 78 REMARK 465 PRO D 79 REMARK 465 GLY D 80 REMARK 465 ASN D 81 REMARK 465 ALA D 82 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 LYS E 3 REMARK 465 SER E 72 REMARK 465 GLY E 73 REMARK 465 ASP E 74 REMARK 465 GLN E 75 REMARK 465 PRO E 76 REMARK 465 ALA E 77 REMARK 465 GLU E 78 REMARK 465 PRO E 79 REMARK 465 GLY E 80 REMARK 465 ASN E 81 REMARK 465 ALA E 82 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 SER F 72 REMARK 465 GLY F 73 REMARK 465 ASP F 74 REMARK 465 GLN F 75 REMARK 465 PRO F 76 REMARK 465 ALA F 77 REMARK 465 GLU F 78 REMARK 465 PRO F 79 REMARK 465 GLY F 80 REMARK 465 ASN F 81 REMARK 465 ALA F 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 244 O HOH D 251 2.09 REMARK 500 O HOH A 217 O HOH B 223 2.12 REMARK 500 O HOH B 234 O HOH B 236 2.12 REMARK 500 O HOH D 228 O HOH D 255 2.13 REMARK 500 O HOH F 222 O HOH F 229 2.13 REMARK 500 O HOH D 221 O HOH E 138 2.13 REMARK 500 O1A ATP B 101 O HOH B 213 2.14 REMARK 500 O HOH E 106 O HOH E 115 2.15 REMARK 500 O HOH B 217 O HOH B 222 2.15 REMARK 500 O HOH F 205 O HOH F 224 2.16 REMARK 500 N3 ATP F 101 O HOH F 223 2.16 REMARK 500 O HOH A 228 O HOH A 230 2.17 REMARK 500 O1 PEG D 102 O HOH D 219 2.18 REMARK 500 O1B ATP F 101 O HOH F 231 2.18 REMARK 500 O HOH A 226 O HOH A 228 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 6 33.38 -61.87 REMARK 500 LEU A 7 -49.18 -176.44 REMARK 500 ASN A 48 -100.39 -165.36 REMARK 500 HIS B 5 31.78 -94.77 REMARK 500 ASP B 40 -159.90 -138.57 REMARK 500 ASN B 48 -139.47 -177.17 REMARK 500 ASP C 40 -155.31 -139.88 REMARK 500 ASN C 48 -117.89 -160.27 REMARK 500 ASP D 40 -155.52 -132.20 REMARK 500 ASN D 48 -137.87 -166.85 REMARK 500 ASN E 48 -98.76 -141.25 REMARK 500 ASP F 40 -158.36 -126.32 REMARK 500 ASN F 48 -114.63 -153.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS E 47 ASN E 48 144.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 29 O REMARK 620 2 ATP A 101 O2' 114.6 REMARK 620 3 ATP A 101 O3' 133.7 66.6 REMARK 620 4 HOH A 234 O 70.4 88.6 63.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 29 O REMARK 620 2 ATP D 101 O2' 107.3 REMARK 620 3 HOH D 213 O 109.2 91.4 REMARK 620 4 HOH D 233 O 113.5 113.5 119.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP F 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U1S RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN REMARK 900 RELATED ID: 1U1T RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN REMARK 900 RELATED ID: 3QUI RELATED DB: PDB REMARK 900 PAEHFQ IN COMPLEX WITH ADPNP REMARK 900 RELATED ID: 3GIB RELATED DB: PDB REMARK 900 CRYSTAL STUCTURE OF THE COMPLEX OF THE E. COLI HFQ WITH POLY(A) REMARK 900 RELATED ID: 3RER RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI HFQ IN COMPLEX WITH AU6A RNA AND ADP REMARK 900 RELATED ID: 3QO3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ESCHERICHIA COLI HFQ IN COMPLEX WITH ATP REMARK 900 RELATED ID: 4J6W RELATED DB: PDB REMARK 900 HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH CTP REMARK 900 RELATED ID: 4J6X RELATED DB: PDB REMARK 900 HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH UTP REMARK 900 RELATED ID: 4J6Y RELATED DB: PDB REMARK 900 HFQ FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH GTP DBREF 4J5Y A 1 82 UNP Q9HUM0 HFQ_PSEAE 1 82 DBREF 4J5Y B 1 82 UNP Q9HUM0 HFQ_PSEAE 1 82 DBREF 4J5Y C 1 82 UNP Q9HUM0 HFQ_PSEAE 1 82 DBREF 4J5Y D 1 82 UNP Q9HUM0 HFQ_PSEAE 1 82 DBREF 4J5Y E 1 82 UNP Q9HUM0 HFQ_PSEAE 1 82 DBREF 4J5Y F 1 82 UNP Q9HUM0 HFQ_PSEAE 1 82 SEQRES 1 A 82 MET SER LYS GLY HIS SER LEU GLN ASP PRO TYR LEU ASN SEQRES 2 A 82 THR LEU ARG LYS GLU ARG VAL PRO VAL SER ILE TYR LEU SEQRES 3 A 82 VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE SEQRES 4 A 82 ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN SEQRES 5 A 82 MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER SEQRES 6 A 82 ARG PRO VAL ARG LEU PRO SER GLY ASP GLN PRO ALA GLU SEQRES 7 A 82 PRO GLY ASN ALA SEQRES 1 B 82 MET SER LYS GLY HIS SER LEU GLN ASP PRO TYR LEU ASN SEQRES 2 B 82 THR LEU ARG LYS GLU ARG VAL PRO VAL SER ILE TYR LEU SEQRES 3 B 82 VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE SEQRES 4 B 82 ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN SEQRES 5 B 82 MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER SEQRES 6 B 82 ARG PRO VAL ARG LEU PRO SER GLY ASP GLN PRO ALA GLU SEQRES 7 B 82 PRO GLY ASN ALA SEQRES 1 C 82 MET SER LYS GLY HIS SER LEU GLN ASP PRO TYR LEU ASN SEQRES 2 C 82 THR LEU ARG LYS GLU ARG VAL PRO VAL SER ILE TYR LEU SEQRES 3 C 82 VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE SEQRES 4 C 82 ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN SEQRES 5 C 82 MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER SEQRES 6 C 82 ARG PRO VAL ARG LEU PRO SER GLY ASP GLN PRO ALA GLU SEQRES 7 C 82 PRO GLY ASN ALA SEQRES 1 D 82 MET SER LYS GLY HIS SER LEU GLN ASP PRO TYR LEU ASN SEQRES 2 D 82 THR LEU ARG LYS GLU ARG VAL PRO VAL SER ILE TYR LEU SEQRES 3 D 82 VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE SEQRES 4 D 82 ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN SEQRES 5 D 82 MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER SEQRES 6 D 82 ARG PRO VAL ARG LEU PRO SER GLY ASP GLN PRO ALA GLU SEQRES 7 D 82 PRO GLY ASN ALA SEQRES 1 E 82 MET SER LYS GLY HIS SER LEU GLN ASP PRO TYR LEU ASN SEQRES 2 E 82 THR LEU ARG LYS GLU ARG VAL PRO VAL SER ILE TYR LEU SEQRES 3 E 82 VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE SEQRES 4 E 82 ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN SEQRES 5 E 82 MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER SEQRES 6 E 82 ARG PRO VAL ARG LEU PRO SER GLY ASP GLN PRO ALA GLU SEQRES 7 E 82 PRO GLY ASN ALA SEQRES 1 F 82 MET SER LYS GLY HIS SER LEU GLN ASP PRO TYR LEU ASN SEQRES 2 F 82 THR LEU ARG LYS GLU ARG VAL PRO VAL SER ILE TYR LEU SEQRES 3 F 82 VAL ASN GLY ILE LYS LEU GLN GLY GLN ILE GLU SER PHE SEQRES 4 F 82 ASP GLN PHE VAL ILE LEU LEU LYS ASN THR VAL SER GLN SEQRES 5 F 82 MET VAL TYR LYS HIS ALA ILE SER THR VAL VAL PRO SER SEQRES 6 F 82 ARG PRO VAL ARG LEU PRO SER GLY ASP GLN PRO ALA GLU SEQRES 7 F 82 PRO GLY ASN ALA HET ATP A 101 31 HET NA A 102 1 HET ATP B 101 31 HET ATP C 101 31 HET ATP D 101 31 HET PEG D 102 7 HET NA D 103 1 HET ATP F 101 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 7 ATP 5(C10 H16 N5 O13 P3) FORMUL 8 NA 2(NA 1+) FORMUL 12 PEG C4 H10 O3 FORMUL 15 HOH *285(H2 O) HELIX 1 1 LEU A 7 GLU A 18 1 12 HELIX 2 2 LEU B 7 GLU B 18 1 12 HELIX 3 3 LEU C 7 GLU C 18 1 12 HELIX 4 4 LEU D 7 GLU D 18 1 12 HELIX 5 5 LEU E 7 GLU E 18 1 12 HELIX 6 6 LEU F 7 GLU F 18 1 12 SHEET 1 A31 PRO A 21 LEU A 26 0 SHEET 2 A31 LYS A 31 PHE A 39 -1 O LEU A 32 N ILE A 24 SHEET 3 A31 VAL A 43 LYS A 47 -1 O LEU A 45 N SER A 38 SHEET 4 A31 GLN A 52 TYR A 55 -1 O VAL A 54 N ILE A 44 SHEET 5 A31 ILE B 59 PRO B 64 -1 O SER B 60 N TYR A 55 SHEET 6 A31 VAL B 22 LEU B 26 -1 N SER B 23 O VAL B 63 SHEET 7 A31 LYS B 31 PHE B 39 -1 O LEU B 32 N ILE B 24 SHEET 8 A31 VAL B 43 LYS B 47 -1 O LYS B 47 N GLN B 35 SHEET 9 A31 GLN B 52 TYR B 55 -1 O VAL B 54 N ILE B 44 SHEET 10 A31 ILE C 59 PRO C 64 -1 O VAL C 62 N MET B 53 SHEET 11 A31 VAL C 22 LEU C 26 -1 N SER C 23 O VAL C 63 SHEET 12 A31 LYS C 31 PHE C 39 -1 O LEU C 32 N ILE C 24 SHEET 13 A31 VAL C 43 LYS C 47 -1 O LYS C 47 N GLN C 35 SHEET 14 A31 GLN C 52 TYR C 55 -1 O VAL C 54 N ILE C 44 SHEET 15 A31 ILE D 59 PRO D 64 -1 O SER D 60 N TYR C 55 SHEET 16 A31 PRO D 21 LEU D 26 -1 N SER D 23 O VAL D 63 SHEET 17 A31 LYS D 31 PHE D 39 -1 O LEU D 32 N ILE D 24 SHEET 18 A31 VAL D 43 LYS D 47 -1 O LYS D 47 N GLN D 35 SHEET 19 A31 GLN D 52 TYR D 55 -1 O VAL D 54 N ILE D 44 SHEET 20 A31 ILE E 59 PRO E 64 -1 O SER E 60 N TYR D 55 SHEET 21 A31 VAL E 22 LEU E 26 -1 N SER E 23 O VAL E 63 SHEET 22 A31 LYS E 31 PHE E 39 -1 O LEU E 32 N ILE E 24 SHEET 23 A31 VAL E 43 LYS E 47 -1 O LEU E 45 N GLU E 37 SHEET 24 A31 SER E 51 TYR E 55 -1 O VAL E 54 N ILE E 44 SHEET 25 A31 ILE F 59 PRO F 64 -1 O SER F 60 N TYR E 55 SHEET 26 A31 PRO F 21 LEU F 26 -1 N SER F 23 O VAL F 63 SHEET 27 A31 LYS F 31 PHE F 39 -1 O LEU F 32 N ILE F 24 SHEET 28 A31 VAL F 43 LYS F 47 -1 O LEU F 45 N SER F 38 SHEET 29 A31 SER F 51 TYR F 55 -1 O VAL F 54 N ILE F 44 SHEET 30 A31 ILE A 59 PRO A 64 -1 N SER A 60 O TYR F 55 SHEET 31 A31 PRO A 21 LEU A 26 -1 N TYR A 25 O SER A 60 LINK O GLY A 29 NA NA A 102 1555 1555 3.10 LINK O2' ATP A 101 NA NA A 102 1555 1555 2.30 LINK O3' ATP A 101 NA NA A 102 1555 1555 2.45 LINK NA NA A 102 O HOH A 234 1555 1555 2.96 LINK O GLY D 29 NA NA D 103 1555 1555 2.85 LINK O2' ATP D 101 NA NA D 103 1555 1555 2.62 LINK NA NA D 103 O HOH D 213 1555 1555 2.86 LINK NA NA D 103 O HOH D 233 1555 1555 2.64 SITE 1 AC1 13 TYR A 25 LYS A 31 THR A 61 VAL A 63 SITE 2 AC1 13 NA A 102 HOH A 202 HOH A 233 HOH A 234 SITE 3 AC1 13 ARG B 19 LEU F 26 ILE F 30 LEU F 32 SITE 4 AC1 13 GLN F 52 SITE 1 AC2 3 GLY A 29 ATP A 101 HOH A 234 SITE 1 AC3 7 GLN A 52 TYR B 25 GLY B 29 LYS B 31 SITE 2 AC3 7 THR B 61 VAL B 63 HOH B 213 SITE 1 AC4 10 ILE B 30 GLN B 52 TYR C 25 GLY C 29 SITE 2 AC4 10 LYS C 31 THR C 61 HOH C 213 HOH C 217 SITE 3 AC4 10 HOH C 218 HOH C 220 SITE 1 AC5 14 ARG A 19 HOH A 218 LEU C 26 ILE C 30 SITE 2 AC5 14 GLN C 52 TYR D 25 LYS D 31 THR D 61 SITE 3 AC5 14 VAL D 63 NA D 103 HOH D 213 HOH D 231 SITE 4 AC5 14 HOH D 241 HOH D 242 SITE 1 AC6 5 ARG D 16 SER D 38 PHE D 39 HOH D 219 SITE 2 AC6 5 HOH D 226 SITE 1 AC7 4 GLY D 29 ATP D 101 HOH D 213 HOH D 233 SITE 1 AC8 16 GLN B 35 ASN B 48 THR B 49 HOH B 252 SITE 2 AC8 16 ILE E 30 LEU E 32 GLN E 52 TYR F 25 SITE 3 AC8 16 GLY F 29 SER F 60 THR F 61 VAL F 63 SITE 4 AC8 16 HOH F 216 HOH F 218 HOH F 223 HOH F 231 CRYST1 61.450 73.680 107.560 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009297 0.00000