HEADER HYDROLASE 11-FEB-13 4J6E TITLE STRUCTURE OF LPXI D225A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACYLGLUCOSAMINE PYROPHOSPHATASE LPXI; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.54; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS; SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 STRAIN: CB15N; SOURCE 5 GENE: 77330127, CCNA_01987, CC_1910, LPXI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, CENTER FOR STRUCTURES OF MEMBRANE KEYWDS 2 PROTEINS, CSMP, HYDROLASE, LIPID BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.E.METZGER IV,J.K.LEE,J.S.FINER-MOORE,C.R.H.RAETZ,R.M.STROUD,CENTER AUTHOR 2 FOR STRUCTURES OF MEMBRANE PROTEINS (CSMP) REVDAT 4 28-FEB-24 4J6E 1 REMARK SEQADV REVDAT 3 17-JUL-19 4J6E 1 REMARK REVDAT 2 15-NOV-17 4J6E 1 REMARK REVDAT 1 08-MAY-13 4J6E 0 SPRSDE 08-MAY-13 4J6E 4GGI JRNL AUTH L.E.METZGER IV,J.K.LEE,J.S.FINER-MOORE,C.R.H.RAETZ, JRNL AUTH 2 R.M.STROUD JRNL TITL LPXI STRUCTURES REVEAL HOW A LIPID A PRECURSOR IS JRNL TITL 2 SYNTHESIZED. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1132 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23042606 JRNL DOI 10.1038/NSMB.2393 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 9602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.2004 - 4.8199 1.00 1364 152 0.2206 0.2589 REMARK 3 2 4.8199 - 3.8259 1.00 1270 142 0.2016 0.3137 REMARK 3 3 3.8259 - 3.3423 1.00 1246 138 0.2042 0.2748 REMARK 3 4 3.3423 - 3.0367 0.99 1229 137 0.2181 0.2599 REMARK 3 5 3.0367 - 2.8191 0.98 1188 132 0.2405 0.3090 REMARK 3 6 2.8191 - 2.6529 0.96 1191 133 0.2724 0.3345 REMARK 3 7 2.6529 - 2.5200 0.95 1152 128 0.2876 0.3349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2073 REMARK 3 ANGLE : 1.357 2802 REMARK 3 CHIRALITY : 0.081 327 REMARK 3 PLANARITY : 0.006 365 REMARK 3 DIHEDRAL : 20.778 786 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5801 27.5588 2.3643 REMARK 3 T TENSOR REMARK 3 T11: 0.9524 T22: 1.3048 REMARK 3 T33: 0.9154 T12: 0.1412 REMARK 3 T13: -0.1669 T23: -0.1970 REMARK 3 L TENSOR REMARK 3 L11: 8.0588 L22: 2.9647 REMARK 3 L33: 4.5680 L12: -4.1308 REMARK 3 L13: -3.0589 L23: 0.8264 REMARK 3 S TENSOR REMARK 3 S11: 0.3255 S12: 0.1802 S13: -0.5550 REMARK 3 S21: -0.6818 S22: 0.2758 S23: -0.4619 REMARK 3 S31: 0.6664 S32: 0.8418 S33: -0.6397 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6142 42.3285 -13.9144 REMARK 3 T TENSOR REMARK 3 T11: 0.7561 T22: 1.5848 REMARK 3 T33: 1.0067 T12: -0.3783 REMARK 3 T13: 0.3934 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.6687 L22: 2.8077 REMARK 3 L33: 3.9119 L12: 0.3559 REMARK 3 L13: 0.2022 L23: -1.2742 REMARK 3 S TENSOR REMARK 3 S11: -0.3427 S12: -0.0043 S13: -0.7550 REMARK 3 S21: -1.3040 S22: 0.3715 S23: -1.1053 REMARK 3 S31: 0.6600 S32: 1.4808 S33: 0.6043 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3128 51.4962 -6.2245 REMARK 3 T TENSOR REMARK 3 T11: 0.5581 T22: 0.8215 REMARK 3 T33: 0.4089 T12: -0.2681 REMARK 3 T13: 0.0202 T23: 0.1269 REMARK 3 L TENSOR REMARK 3 L11: 3.9833 L22: 4.5785 REMARK 3 L33: 3.9589 L12: 1.3743 REMARK 3 L13: -1.8498 L23: 1.2566 REMARK 3 S TENSOR REMARK 3 S11: -0.3580 S12: 0.2644 S13: -0.1922 REMARK 3 S21: -0.3848 S22: 0.1913 S23: -0.3637 REMARK 3 S31: -0.2698 S32: 0.5804 S33: 0.2004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI111 REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 61.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH 7.5-9.0,180-200 MM NACL, REMARK 280 1.3-1.6 M (NH4)2SO4 AND 6% V/V GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.09667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.19333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.64500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.74167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.54833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.09667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.19333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.74167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.64500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.54833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -53.64850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 92.92193 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 13.54833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLN A 220 REMARK 465 GLU A 221 REMARK 465 THR A 222 REMARK 465 GLN A 277 REMARK 465 GLU A 278 REMARK 465 ARG A 279 REMARK 465 PRO A 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 185 NH2 ARG A 193 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 -102.25 -72.94 REMARK 500 GLU A 53 65.63 -68.59 REMARK 500 ASP A 104 24.60 -76.66 REMARK 500 ASP A 105 -41.07 -134.83 REMARK 500 GLU A 123 98.05 -173.34 REMARK 500 GLU A 131 -43.80 -144.93 REMARK 500 MET A 132 53.77 -148.30 REMARK 500 GLU A 147 9.47 -56.76 REMARK 500 ILE A 167 -78.57 -60.72 REMARK 500 ALA A 183 -104.43 -119.60 REMARK 500 LYS A 217 64.81 70.19 REMARK 500 VAL A 224 -35.51 -142.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDG A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GGM RELATED DB: PDB REMARK 900 WILD TYPE LPXI PRODUCT COMPLEX REMARK 900 RELATED ID: CSMP-167 RELATED DB: TARGETTRACK DBREF 4J6E A 1 280 UNP B8GWR0 B8GWR0_CAUCN 1 280 SEQADV 4J6E GLY A -2 UNP B8GWR0 EXPRESSION TAG SEQADV 4J6E HIS A -1 UNP B8GWR0 EXPRESSION TAG SEQADV 4J6E MET A 0 UNP B8GWR0 EXPRESSION TAG SEQADV 4J6E ALA A 225 UNP B8GWR0 ASP 225 ENGINEERED MUTATION SEQRES 1 A 283 GLY HIS MET MET ARG LYS LEU GLY LEU ILE ALA GLY GLY SEQRES 2 A 283 GLY ALA LEU PRO VAL GLU LEU ALA SER HIS CYS GLU ALA SEQRES 3 A 283 ALA GLY ARG ALA PHE ALA VAL MET ARG LEU ARG SER PHE SEQRES 4 A 283 ALA ASP PRO SER LEU ASP ARG TYR PRO GLY ALA ASP VAL SEQRES 5 A 283 GLY ILE GLY GLU PHE GLY LYS ILE PHE LYS ALA LEU ARG SEQRES 6 A 283 ALA GLU GLY CYS ASP VAL VAL CYS PHE ALA GLY ASN VAL SEQRES 7 A 283 SER ARG PRO ASP PHE SER ALA LEU MET PRO ASP ALA ARG SEQRES 8 A 283 GLY LEU LYS VAL LEU PRO SER LEU ILE VAL ALA ALA ARG SEQRES 9 A 283 LYS GLY ASP ASP ALA LEU LEU ARG ARG VAL LEU ASP GLU SEQRES 10 A 283 PHE GLU LYS GLU GLY PHE GLU ILE GLU GLY ALA HIS GLU SEQRES 11 A 283 VAL MET GLY GLU MET THR LEU PRO ARG GLY ARG LEU GLY SEQRES 12 A 283 LYS VAL SER PRO ALA PRO GLU HIS MET ALA ASP ILE ASP SEQRES 13 A 283 LYS ALA LEU ASP VAL ALA ARG GLU ILE GLY ARG LEU ASP SEQRES 14 A 283 ILE GLY GLN GLY ALA VAL VAL CYS GLU GLY LEU VAL LEU SEQRES 15 A 283 ALA VAL GLU ALA GLN GLU GLY THR ASP ALA MET LEU ARG SEQRES 16 A 283 ARG VAL ALA ASP LEU PRO GLU ALA ILE ARG GLY ARG ALA SEQRES 17 A 283 GLU ARG ARG LEU GLY VAL LEU ALA LYS ALA PRO LYS PRO SEQRES 18 A 283 ILE GLN GLU THR ARG VAL ALA LEU PRO THR ILE GLY VAL SEQRES 19 A 283 ALA THR ILE HIS ARG ALA ALA ARG ALA GLY LEU ALA GLY SEQRES 20 A 283 ILE VAL GLY GLU ALA GLY ARG LEU LEU VAL VAL ASP ARG SEQRES 21 A 283 GLU ALA VAL ILE ALA ALA ALA ASP ASP LEU GLY LEU PHE SEQRES 22 A 283 VAL LEU GLY VAL ASP PRO GLN GLU ARG PRO HET UDG A 301 68 HETNAM UDG (2R,3R,4R,5S,6R)-2-{[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(2,4- HETNAM 2 UDG DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETNAM 3 UDG DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY) HETNAM 4 UDG PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-5-HYDROXY-6- HETNAM 5 UDG (HYDROXYMETHYL)-3-{[(3R)-3- HETNAM 6 UDG HYDROXYTETRADECANOYL]AMINO}TETRAHYDRO-2H-PYRAN-4-YL HETNAM 7 UDG (3R)-3-HYDROXYTETRADECANOATE FORMUL 2 UDG C43 H77 N3 O20 P2 FORMUL 3 HOH *19(H2 O) HELIX 1 1 ALA A 12 GLY A 25 1 14 HELIX 2 2 ASP A 38 ASP A 42 5 5 HELIX 3 3 GLU A 53 GLY A 65 1 13 HELIX 4 4 ASP A 79 LEU A 83 5 5 HELIX 5 5 LEU A 93 GLY A 103 1 11 HELIX 6 6 ASP A 105 GLU A 118 1 14 HELIX 7 7 GLU A 123 THR A 133 1 11 HELIX 8 8 ALA A 145 GLU A 147 5 3 HELIX 9 9 HIS A 148 LEU A 165 1 18 HELIX 10 10 GLY A 186 LEU A 197 1 12 HELIX 11 11 PRO A 198 ARG A 202 5 5 HELIX 12 12 GLY A 230 ALA A 240 1 11 HELIX 13 13 ASP A 256 GLY A 268 1 13 SHEET 1 A 4 GLY A 46 VAL A 49 0 SHEET 2 A 4 VAL A 30 LEU A 33 1 N ARG A 32 O VAL A 49 SHEET 3 A 4 GLY A 5 ALA A 8 1 N LEU A 6 O MET A 31 SHEET 4 A 4 VAL A 69 ALA A 72 1 O CYS A 70 N GLY A 5 SHEET 1 B 6 GLY A 137 ARG A 138 0 SHEET 2 B 6 PHE A 270 VAL A 274 -1 O GLY A 273 N GLY A 137 SHEET 3 B 6 GLY A 244 GLU A 248 1 N GLY A 247 O VAL A 274 SHEET 4 B 6 VAL A 211 LYS A 214 1 N LEU A 212 O VAL A 246 SHEET 5 B 6 GLY A 170 CYS A 174 -1 N ALA A 171 O ALA A 213 SHEET 6 B 6 LEU A 177 VAL A 181 -1 O LEU A 179 N VAL A 172 SHEET 1 C 2 THR A 228 ILE A 229 0 SHEET 2 C 2 LEU A 253 VAL A 254 1 O LEU A 253 N ILE A 229 CISPEP 1 LYS A 3 LEU A 4 0 -1.46 CISPEP 2 ARG A 26 ALA A 27 0 -7.76 CISPEP 3 PRO A 216 LYS A 217 0 26.42 SITE 1 AC1 27 GLY A 10 ALA A 12 LEU A 13 ILE A 51 SITE 2 AC1 27 ILE A 57 PHE A 71 GLY A 73 ASN A 74 SITE 3 AC1 27 VAL A 75 ARG A 77 ASP A 104 LEU A 108 SITE 4 AC1 27 GLN A 169 GLU A 182 THR A 187 ASP A 188 SITE 5 AC1 27 LYS A 214 ALA A 225 LEU A 226 THR A 228 SITE 6 AC1 27 ILE A 229 GLY A 230 VAL A 231 ALA A 232 SITE 7 AC1 27 THR A 233 HOH A 405 HOH A 417 CRYST1 107.297 107.297 81.290 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009320 0.005381 0.000000 0.00000 SCALE2 0.000000 0.010762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012302 0.00000