HEADER CHAPERONE 14-FEB-13 4J7Z TITLE THERMUS THERMOPHILUS DNAJ J- AND G/F-DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAJ 2; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 2-114; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 5 GENE: DNAJ2, TTHA1489; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS J-DOMAIN, POLYPROLINE-II HELIX, CHAPERONE, DNA REPLICATION, STRESS KEYWDS 2 RESPONSE EXPDTA X-RAY DIFFRACTION; EPR AUTHOR T.R.M.BARENDS,R.W.BROSI,A.STEINMETZ,A.SCHERER,E.HARTMANN, AUTHOR 2 J.ESCHENBACH,T.LORENZ,R.SEIDEL,R.SHOEMAN,S.ZIMMERMANN,R.BITTL, AUTHOR 3 I.SCHLICHTING,J.REINSTEIN REVDAT 3 28-FEB-24 4J7Z 1 REMARK REVDAT 2 09-OCT-13 4J7Z 1 JRNL REVDAT 1 31-JUL-13 4J7Z 0 JRNL AUTH T.R.BARENDS,R.W.BROSI,A.STEINMETZ,A.SCHERER,E.HARTMANN, JRNL AUTH 2 J.ESCHENBACH,T.LORENZ,R.SEIDEL,R.L.SHOEMAN,S.ZIMMERMANN, JRNL AUTH 3 R.BITTL,I.SCHLICHTING,J.REINSTEIN JRNL TITL COMBINING CRYSTALLOGRAPHY AND EPR: CRYSTAL AND SOLUTION JRNL TITL 2 STRUCTURES OF THE MULTIDOMAIN COCHAPERONE DNAJ. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1540 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23897477 JRNL DOI 10.1107/S0907444913010640 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 68483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN RESOLUTION SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5142 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5088 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4351 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6889 ; 1.174 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10218 ; 3.583 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ;10.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;31.289 ;23.986 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;13.572 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;10.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 662 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5728 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1096 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1140 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3865 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2579 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2263 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 264 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.063 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 121 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3028 ; 2.821 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1188 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4886 ; 3.961 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2060 ; 3.208 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2003 ; 4.572 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8750 40.9770 64.0740 REMARK 3 T TENSOR REMARK 3 T11: -0.1135 T22: -0.0815 REMARK 3 T33: -0.1826 T12: 0.0043 REMARK 3 T13: -0.0111 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 2.5968 L22: 3.3595 REMARK 3 L33: 4.4834 L12: 0.2039 REMARK 3 L13: 0.1676 L23: -0.2773 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 0.3345 S13: -0.3486 REMARK 3 S21: -0.2659 S22: 0.0711 S23: 0.0646 REMARK 3 S31: 0.6554 S32: -0.1179 S33: -0.1027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7310 46.8390 90.7300 REMARK 3 T TENSOR REMARK 3 T11: -0.1550 T22: -0.1925 REMARK 3 T33: -0.2011 T12: -0.0139 REMARK 3 T13: 0.0152 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.0910 L22: 1.8559 REMARK 3 L33: 5.2558 L12: -0.4040 REMARK 3 L13: 0.1462 L23: -1.3869 REMARK 3 S TENSOR REMARK 3 S11: 0.1493 S12: -0.0536 S13: 0.0409 REMARK 3 S21: 0.1963 S22: -0.0315 S23: 0.1652 REMARK 3 S31: -0.1469 S32: -0.4360 S33: -0.1179 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): -30.4010 69.8480 83.2470 REMARK 3 T TENSOR REMARK 3 T11: -0.1567 T22: -0.1436 REMARK 3 T33: -0.1845 T12: 0.0429 REMARK 3 T13: 0.0233 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.4586 L22: 2.8399 REMARK 3 L33: 7.0120 L12: -0.1205 REMARK 3 L13: -0.1273 L23: 0.7651 REMARK 3 S TENSOR REMARK 3 S11: 0.1187 S12: 0.2657 S13: 0.1786 REMARK 3 S21: -0.0515 S22: 0.0494 S23: -0.2285 REMARK 3 S31: -0.5557 S32: 0.4324 S33: -0.1680 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 107 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9850 64.0170 109.8490 REMARK 3 T TENSOR REMARK 3 T11: -0.0181 T22: -0.1673 REMARK 3 T33: -0.1810 T12: 0.1382 REMARK 3 T13: 0.0368 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.7950 L22: 3.2492 REMARK 3 L33: 8.6027 L12: 0.0943 REMARK 3 L13: -0.1904 L23: 1.9843 REMARK 3 S TENSOR REMARK 3 S11: -0.1438 S12: -0.1449 S13: -0.1682 REMARK 3 S21: 0.4206 S22: 0.1394 S23: 0.0410 REMARK 3 S31: 0.9518 S32: 0.4066 S33: 0.0044 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 4 E 101 REMARK 3 ORIGIN FOR THE GROUP (A): -48.7620 36.7570 34.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: -0.0634 REMARK 3 T33: -0.0921 T12: 0.1271 REMARK 3 T13: 0.0824 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 3.3951 L22: 0.4314 REMARK 3 L33: 4.8794 L12: 0.4418 REMARK 3 L13: -2.0795 L23: 0.3676 REMARK 3 S TENSOR REMARK 3 S11: 0.1876 S12: 0.2897 S13: 0.1175 REMARK 3 S21: -0.2321 S22: 0.1062 S23: 0.0799 REMARK 3 S31: -0.7803 S32: -0.7803 S33: -0.2938 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 101 REMARK 3 ORIGIN FOR THE GROUP (A): -31.4070 17.9820 37.0900 REMARK 3 T TENSOR REMARK 3 T11: -0.0131 T22: -0.1503 REMARK 3 T33: -0.0555 T12: 0.0051 REMARK 3 T13: 0.0757 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 3.1463 L22: 3.9860 REMARK 3 L33: 5.2887 L12: -1.5221 REMARK 3 L13: 0.2789 L23: -0.4966 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.1255 S13: -0.4434 REMARK 3 S21: 0.1804 S22: 0.1166 S23: -0.0556 REMARK 3 S31: 0.6884 S32: 0.2388 S33: -0.0764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4J7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 90.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9536 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR, DYNAMICALLY REMARK 200 BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIPAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500 15%, 0.1 M STRONTIUM CHLORIDE REMARK 280 , VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 102 REMARK 465 PRO A 103 REMARK 465 GLY A 104 REMARK 465 LEU A 105 REMARK 465 PHE A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 PHE A 109 REMARK 465 GLY A 110 REMARK 465 ARG A 111 REMARK 465 ARG A 112 REMARK 465 SER A 113 REMARK 465 ARG A 114 REMARK 465 GLY B 102 REMARK 465 PRO B 103 REMARK 465 GLY B 104 REMARK 465 LEU B 105 REMARK 465 PHE B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 108 REMARK 465 PHE B 109 REMARK 465 GLY B 110 REMARK 465 ARG B 111 REMARK 465 ARG B 112 REMARK 465 SER B 113 REMARK 465 ARG B 114 REMARK 465 LEU C 105 REMARK 465 PHE C 106 REMARK 465 GLY C 107 REMARK 465 GLY C 108 REMARK 465 PHE C 109 REMARK 465 GLY C 110 REMARK 465 ARG C 111 REMARK 465 ARG C 112 REMARK 465 SER C 113 REMARK 465 ARG C 114 REMARK 465 GLY D 108 REMARK 465 PHE D 109 REMARK 465 GLY D 110 REMARK 465 ARG D 111 REMARK 465 ARG D 112 REMARK 465 SER D 113 REMARK 465 ARG D 114 REMARK 465 ALA E 2 REMARK 465 ALA E 3 REMARK 465 GLY E 102 REMARK 465 PRO E 103 REMARK 465 GLY E 104 REMARK 465 LEU E 105 REMARK 465 PHE E 106 REMARK 465 GLY E 107 REMARK 465 GLY E 108 REMARK 465 PHE E 109 REMARK 465 GLY E 110 REMARK 465 ARG E 111 REMARK 465 ARG E 112 REMARK 465 SER E 113 REMARK 465 ARG E 114 REMARK 465 ASP F 36 REMARK 465 VAL F 37 REMARK 465 ASN F 38 REMARK 465 LYS F 39 REMARK 465 SER F 40 REMARK 465 PRO F 41 REMARK 465 GLY F 102 REMARK 465 PRO F 103 REMARK 465 GLY F 104 REMARK 465 LEU F 105 REMARK 465 PHE F 106 REMARK 465 GLY F 107 REMARK 465 GLY F 108 REMARK 465 PHE F 109 REMARK 465 GLY F 110 REMARK 465 ARG F 111 REMARK 465 ARG F 112 REMARK 465 SER F 113 REMARK 465 ARG F 114 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 6 O1 GOL B 201 3564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 64 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 85 50.15 -114.45 REMARK 500 VAL C 37 -40.26 -131.28 REMARK 500 LYS C 39 55.57 -145.84 REMARK 500 PHE E 85 -60.27 -120.59 REMARK 500 SER E 86 -4.76 63.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J80 RELATED DB: PDB DBREF 4J7Z A 2 114 UNP Q56237 DNAJ2_THET8 2 114 DBREF 4J7Z B 2 114 UNP Q56237 DNAJ2_THET8 2 114 DBREF 4J7Z C 2 114 UNP Q56237 DNAJ2_THET8 2 114 DBREF 4J7Z D 2 114 UNP Q56237 DNAJ2_THET8 2 114 DBREF 4J7Z E 2 114 UNP Q56237 DNAJ2_THET8 2 114 DBREF 4J7Z F 2 114 UNP Q56237 DNAJ2_THET8 2 114 SEQRES 1 A 113 ALA ALA LYS LYS ASP TYR TYR ALA ILE LEU GLY VAL PRO SEQRES 2 A 113 ARG ASN ALA THR GLN GLU GLU ILE LYS ARG ALA TYR LYS SEQRES 3 A 113 ARG LEU ALA ARG GLN TYR HIS PRO ASP VAL ASN LYS SER SEQRES 4 A 113 PRO GLU ALA GLU GLU LYS PHE LYS GLU ILE ASN GLU ALA SEQRES 5 A 113 TYR ALA VAL LEU SER ASP PRO GLU LYS ARG ARG ILE TYR SEQRES 6 A 113 ASP THR TYR GLY THR THR GLU ALA PRO PRO PRO PRO PRO SEQRES 7 A 113 PRO GLY GLY TYR ASP PHE SER GLY PHE ASP VAL GLU ASP SEQRES 8 A 113 PHE SER GLU PHE PHE GLN GLU LEU PHE GLY PRO GLY LEU SEQRES 9 A 113 PHE GLY GLY PHE GLY ARG ARG SER ARG SEQRES 1 B 113 ALA ALA LYS LYS ASP TYR TYR ALA ILE LEU GLY VAL PRO SEQRES 2 B 113 ARG ASN ALA THR GLN GLU GLU ILE LYS ARG ALA TYR LYS SEQRES 3 B 113 ARG LEU ALA ARG GLN TYR HIS PRO ASP VAL ASN LYS SER SEQRES 4 B 113 PRO GLU ALA GLU GLU LYS PHE LYS GLU ILE ASN GLU ALA SEQRES 5 B 113 TYR ALA VAL LEU SER ASP PRO GLU LYS ARG ARG ILE TYR SEQRES 6 B 113 ASP THR TYR GLY THR THR GLU ALA PRO PRO PRO PRO PRO SEQRES 7 B 113 PRO GLY GLY TYR ASP PHE SER GLY PHE ASP VAL GLU ASP SEQRES 8 B 113 PHE SER GLU PHE PHE GLN GLU LEU PHE GLY PRO GLY LEU SEQRES 9 B 113 PHE GLY GLY PHE GLY ARG ARG SER ARG SEQRES 1 C 113 ALA ALA LYS LYS ASP TYR TYR ALA ILE LEU GLY VAL PRO SEQRES 2 C 113 ARG ASN ALA THR GLN GLU GLU ILE LYS ARG ALA TYR LYS SEQRES 3 C 113 ARG LEU ALA ARG GLN TYR HIS PRO ASP VAL ASN LYS SER SEQRES 4 C 113 PRO GLU ALA GLU GLU LYS PHE LYS GLU ILE ASN GLU ALA SEQRES 5 C 113 TYR ALA VAL LEU SER ASP PRO GLU LYS ARG ARG ILE TYR SEQRES 6 C 113 ASP THR TYR GLY THR THR GLU ALA PRO PRO PRO PRO PRO SEQRES 7 C 113 PRO GLY GLY TYR ASP PHE SER GLY PHE ASP VAL GLU ASP SEQRES 8 C 113 PHE SER GLU PHE PHE GLN GLU LEU PHE GLY PRO GLY LEU SEQRES 9 C 113 PHE GLY GLY PHE GLY ARG ARG SER ARG SEQRES 1 D 113 ALA ALA LYS LYS ASP TYR TYR ALA ILE LEU GLY VAL PRO SEQRES 2 D 113 ARG ASN ALA THR GLN GLU GLU ILE LYS ARG ALA TYR LYS SEQRES 3 D 113 ARG LEU ALA ARG GLN TYR HIS PRO ASP VAL ASN LYS SER SEQRES 4 D 113 PRO GLU ALA GLU GLU LYS PHE LYS GLU ILE ASN GLU ALA SEQRES 5 D 113 TYR ALA VAL LEU SER ASP PRO GLU LYS ARG ARG ILE TYR SEQRES 6 D 113 ASP THR TYR GLY THR THR GLU ALA PRO PRO PRO PRO PRO SEQRES 7 D 113 PRO GLY GLY TYR ASP PHE SER GLY PHE ASP VAL GLU ASP SEQRES 8 D 113 PHE SER GLU PHE PHE GLN GLU LEU PHE GLY PRO GLY LEU SEQRES 9 D 113 PHE GLY GLY PHE GLY ARG ARG SER ARG SEQRES 1 E 113 ALA ALA LYS LYS ASP TYR TYR ALA ILE LEU GLY VAL PRO SEQRES 2 E 113 ARG ASN ALA THR GLN GLU GLU ILE LYS ARG ALA TYR LYS SEQRES 3 E 113 ARG LEU ALA ARG GLN TYR HIS PRO ASP VAL ASN LYS SER SEQRES 4 E 113 PRO GLU ALA GLU GLU LYS PHE LYS GLU ILE ASN GLU ALA SEQRES 5 E 113 TYR ALA VAL LEU SER ASP PRO GLU LYS ARG ARG ILE TYR SEQRES 6 E 113 ASP THR TYR GLY THR THR GLU ALA PRO PRO PRO PRO PRO SEQRES 7 E 113 PRO GLY GLY TYR ASP PHE SER GLY PHE ASP VAL GLU ASP SEQRES 8 E 113 PHE SER GLU PHE PHE GLN GLU LEU PHE GLY PRO GLY LEU SEQRES 9 E 113 PHE GLY GLY PHE GLY ARG ARG SER ARG SEQRES 1 F 113 ALA ALA LYS LYS ASP TYR TYR ALA ILE LEU GLY VAL PRO SEQRES 2 F 113 ARG ASN ALA THR GLN GLU GLU ILE LYS ARG ALA TYR LYS SEQRES 3 F 113 ARG LEU ALA ARG GLN TYR HIS PRO ASP VAL ASN LYS SER SEQRES 4 F 113 PRO GLU ALA GLU GLU LYS PHE LYS GLU ILE ASN GLU ALA SEQRES 5 F 113 TYR ALA VAL LEU SER ASP PRO GLU LYS ARG ARG ILE TYR SEQRES 6 F 113 ASP THR TYR GLY THR THR GLU ALA PRO PRO PRO PRO PRO SEQRES 7 F 113 PRO GLY GLY TYR ASP PHE SER GLY PHE ASP VAL GLU ASP SEQRES 8 F 113 PHE SER GLU PHE PHE GLN GLU LEU PHE GLY PRO GLY LEU SEQRES 9 F 113 PHE GLY GLY PHE GLY ARG ARG SER ARG HET GOL B 201 6 HET GOL C 201 6 HET GOL E 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *342(H2 O) HELIX 1 1 ASP A 6 GLY A 12 1 7 HELIX 2 2 THR A 18 HIS A 34 1 17 HELIX 3 3 SER A 40 SER A 58 1 19 HELIX 4 4 ASP A 59 TYR A 69 1 11 HELIX 5 5 ASP A 89 PHE A 93 5 5 HELIX 6 6 SER A 94 PHE A 101 1 8 HELIX 7 7 ASP B 6 GLY B 12 1 7 HELIX 8 8 THR B 18 HIS B 34 1 17 HELIX 9 9 PRO B 41 SER B 58 1 18 HELIX 10 10 ASP B 59 TYR B 69 1 11 HELIX 11 11 SER B 94 PHE B 101 1 8 HELIX 12 12 ASP C 6 GLY C 12 1 7 HELIX 13 13 THR C 18 HIS C 34 1 17 HELIX 14 14 SER C 40 SER C 58 1 19 HELIX 15 15 ASP C 59 TYR C 69 1 11 HELIX 16 16 ASP C 89 PHE C 93 5 5 HELIX 17 17 SER C 94 GLY C 102 1 9 HELIX 18 18 ASP D 6 GLY D 12 1 7 HELIX 19 19 THR D 18 HIS D 34 1 17 HELIX 20 20 GLU D 42 SER D 58 1 17 HELIX 21 21 ASP D 59 TYR D 69 1 11 HELIX 22 22 ASP D 89 PHE D 93 5 5 HELIX 23 23 SER D 94 GLY D 102 1 9 HELIX 24 24 PRO D 103 LEU D 105 5 3 HELIX 25 25 ASP E 6 GLY E 12 1 7 HELIX 26 26 THR E 18 HIS E 34 1 17 HELIX 27 27 SER E 40 SER E 58 1 19 HELIX 28 28 ASP E 59 TYR E 69 1 11 HELIX 29 29 ASP E 89 PHE E 93 5 5 HELIX 30 30 SER E 94 PHE E 101 1 8 HELIX 31 31 ASP F 6 GLY F 12 1 7 HELIX 32 32 THR F 18 HIS F 34 1 17 HELIX 33 33 GLU F 42 SER F 58 1 17 HELIX 34 34 ASP F 59 TYR F 69 1 11 HELIX 35 35 ASP F 89 PHE F 93 5 5 HELIX 36 36 SER F 94 PHE F 101 1 8 SITE 1 AC1 8 ASP A 6 TYR A 8 ALA A 9 HOH A 203 SITE 2 AC1 8 ASP B 6 TYR B 8 ALA B 9 HOH B 301 SITE 1 AC2 8 ASP C 6 TYR C 8 ALA C 9 VAL C 13 SITE 2 AC2 8 HOH C 303 ASP D 6 ALA D 9 ARG D 15 SITE 1 AC3 9 ASP E 6 TYR E 8 ALA E 9 HOH E 301 SITE 2 AC3 9 ASP F 6 TYR F 8 ALA F 9 ARG F 15 SITE 3 AC3 9 HOH F 301 CRYST1 85.990 85.990 72.720 90.00 90.00 120.00 P 31 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011629 0.006714 0.000000 0.00000 SCALE2 0.000000 0.013428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013751 0.00000