HEADER FLUORESCENT PROTEIN 14-FEB-13 4J8A TITLE IRRADIATED-STATE STRUCTURE OF SFGFP CONTAINING THE UNNATURAL AMINO TITLE 2 ACID P-AZIDO-PHENYLALANINE AT RESIDUE 145 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH10B; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS BETA-BARREL, FLUORESCENT PROTEIN, CHROMOPHORE BY CYCLISATION, P- KEYWDS 2 AZIDO-L-PHENYLALANINE, CYTOSOL EXPDTA X-RAY DIFFRACTION AUTHOR S.C.REDDINGTON,D.D.JONES,P.J.RIZKALLAH,E.M.TIPPMANN REVDAT 5 06-DEC-23 4J8A 1 REMARK REVDAT 4 20-SEP-23 4J8A 1 REMARK SHEET LINK REVDAT 3 22-JAN-20 4J8A 1 SOURCE SEQADV LINK REVDAT 2 26-JUN-13 4J8A 1 JRNL REVDAT 1 15-MAY-13 4J8A 0 JRNL AUTH S.C.REDDINGTON,P.J.RIZKALLAH,P.D.WATSON,R.PEARSON, JRNL AUTH 2 E.M.TIPPMANN,D.D.JONES JRNL TITL DIFFERENT PHOTOCHEMICAL EVENTS OF A GENETICALLY ENCODED JRNL TITL 2 PHENYL AZIDE DEFINE AND MODULATE GFP FLUORESCENCE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 52 5974 2013 JRNL REFN ISSN 1433-7851 JRNL PMID 23620472 JRNL DOI 10.1002/ANIE.201301490 REMARK 2 REMARK 2 RESOLUTION. 1.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 67742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3429 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -1.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2220 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2116 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2966 ; 1.586 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4869 ; 0.672 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 7.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;34.002 ;25.149 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;12.863 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.902 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2480 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2074 ; 8.851 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2016 ;16.785 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4J8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67853 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : 0.03200 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN AND 100 MM TRIS-HCL, REMARK 280 PH 8.3, 2 M (NH4)2SO4, 200+200 NANOL DROP AGAINST 60 MICROL REMARK 280 RESERVOIR, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.81500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.81500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 0 CG SD CE REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 148 O HOH A 628 2.12 REMARK 500 OD1 ASN A 146 O ARG A 168 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 3 C LYS A 3 O 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -156.73 -159.21 REMARK 500 ILE A 136 -60.43 -90.78 REMARK 500 ILE A 136 -68.44 -90.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 337 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J89 RELATED DB: PDB REMARK 900 RELATED ID: 4J88 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATION, DELETION, OR INSERTION OF RESIDUES F64, S65, Y66, G67 REMARK 999 WERE INTRODUCED TO FORM CHROMOPHORE CRO 66. RESIDUES SER 65, TYR 66, REMARK 999 GLY 67 FORM A CHROMOPHORE CRO 66 DBREF 4J8A A 2 238 UNP P42212 GFP_AEQVI 2 238 SEQADV 4J8A MET A 0 UNP P42212 EXPRESSION TAG SEQADV 4J8A VAL A 1 UNP P42212 EXPRESSION TAG SEQADV 4J8A ARG A 30 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 4J8A ASN A 39 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 4J8A CRO A 66 UNP P42212 PHE 64 SEE REMARK 999 SEQADV 4J8A CRO A 66 UNP P42212 SER 65 SEE REMARK 999 SEQADV 4J8A CRO A 66 UNP P42212 TYR 66 SEE REMARK 999 SEQADV 4J8A CRO A 66 UNP P42212 GLY 67 SEE REMARK 999 SEQADV 4J8A ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 4J8A SER A 99 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 4J8A THR A 105 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 4J8A HOX A 145 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 4J8A THR A 153 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 4J8A ALA A 163 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 4J8A VAL A 171 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 4J8A VAL A 206 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 4J8A GLY A 239 UNP P42212 EXPRESSION TAG SEQADV 4J8A SER A 240 UNP P42212 EXPRESSION TAG SEQADV 4J8A HIS A 241 UNP P42212 EXPRESSION TAG SEQADV 4J8A HIS A 242 UNP P42212 EXPRESSION TAG SEQADV 4J8A HIS A 243 UNP P42212 EXPRESSION TAG SEQADV 4J8A HIS A 244 UNP P42212 EXPRESSION TAG SEQADV 4J8A HIS A 245 UNP P42212 EXPRESSION TAG SEQADV 4J8A HIS A 246 UNP P42212 EXPRESSION TAG SEQRES 1 A 245 MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 245 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 245 LYS PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 245 ASN GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 245 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 A 245 CRO VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 245 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 245 VAL GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR SEQRES 9 A 245 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 245 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 245 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 245 HOX ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 A 245 LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN SEQRES 14 A 245 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 245 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 245 ASP ASN HIS TYR LEU SER THR GLN SER VAL LEU SER LYS SEQRES 17 A 245 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 245 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 A 245 LEU TYR LYS GLY SER HIS HIS HIS HIS HIS HIS MODRES 4J8A CRO A 66 GLY MODRES 4J8A CRO A 66 TYR MODRES 4J8A CRO A 66 GLY MODRES 4J8A HOX A 145 PHE 4-AMINO-L-PHENYLALANINE HET CRO A 66 22 HET HOX A 145 23 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET EDO A 306 4 HET EDO A 307 8 HET EDO A 308 8 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 8 HET EDO A 313 4 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET EDO A 317 4 HET EDO A 318 4 HET EDO A 319 4 HET EDO A 320 4 HET EDO A 321 4 HET EDO A 322 4 HET EDO A 323 4 HET EDO A 324 4 HET EDO A 325 4 HET EDO A 326 4 HET EDO A 327 4 HET EDO A 328 4 HET EDO A 329 4 HET EDO A 330 4 HET EDO A 331 8 HET EDO A 332 4 HET EDO A 333 4 HET EDO A 334 4 HET EDO A 335 4 HET TRS A 336 8 HET SO4 A 337 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM HOX 4-AMINO-L-PHENYLALANINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 1 CRO C15 H17 N3 O5 FORMUL 1 HOX C9 H12 N2 O2 FORMUL 2 SO4 6(O4 S 2-) FORMUL 7 EDO 30(C2 H6 O2) FORMUL 37 TRS C4 H12 N O3 1+ FORMUL 39 HOH *260(H2 O) HELIX 1 1 SER A 2 LEU A 7 1 6 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 SER A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N TYR A 200 O ALA A 227 SHEET 6 A12 VAL A 150 ASP A 155 -1 N VAL A 150 O LEU A 201 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 THR A 105 GLU A 115 -1 O VAL A 112 N TYR A 92 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 B 1 ASN A 144 HIS A 148 0 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.41 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.29 LINK CE1 CRO A 66 NZ AHOX A 145 1555 1555 1.59 LINK C AASN A 144 N AHOX A 145 1555 1555 1.35 LINK C BASN A 144 N BHOX A 145 1555 1555 1.33 LINK C AHOX A 145 N AASN A 146 1555 1555 1.29 LINK C BHOX A 145 N BASN A 146 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 9.48 SITE 1 AC1 10 PRO A 56 TRP A 57 PRO A 58 HIS A 139 SITE 2 AC1 10 GLN A 157 EDO A 310 HOH A 417 HOH A 422 SITE 3 AC1 10 HOH A 455 HOH A 464 SITE 1 AC2 8 LYS A 101 ASP A 102 ASP A 103 EDO A 333 SITE 2 AC2 8 EDO A 335 HOH A 420 HOH A 475 HOH A 550 SITE 1 AC3 9 LYS A 107 LYS A 126 ASN A 146 SER A 147 SITE 2 AC3 9 GLN A 204 SER A 205 HOH A 453 HOH A 554 SITE 3 AC3 9 HOH A 639 SITE 1 AC4 5 GLU A 17 ARG A 30 ARG A 122 HOH A 493 SITE 2 AC4 5 HOH A 645 SITE 1 AC5 6 ASP A 19 GLY A 20 ASP A 21 GLU A 124 SITE 2 AC5 6 LEU A 125 HOH A 639 SITE 1 AC6 5 LYS A 107 ARG A 109 GLU A 124 HOH A 639 SITE 2 AC6 5 HOH A 640 SITE 1 AC7 4 ARG A 109 GLU A 111 ARG A 122 GLU A 124 SITE 1 AC8 8 GLU A 95 THR A 97 TYR A 143 TYR A 182 SITE 2 AC8 8 GLN A 184 SER A 208 LYS A 209 HOH A 515 SITE 1 AC9 6 HIS A 77 ALA A 227 GLY A 228 ILE A 229 SITE 2 AC9 6 HOH A 543 HOH A 592 SITE 1 BC1 8 TYR A 143 GLN A 157 LYS A 158 GLN A 184 SITE 2 BC1 8 LYS A 209 SO4 A 301 HOH A 455 HOH A 473 SITE 1 BC2 4 PHE A 165 LYS A 166 HOH A 630 HOH A 652 SITE 1 BC3 6 LYS A 166 ARG A 168 LEU A 178 HOH A 501 SITE 2 BC3 6 HOH A 520 HOH A 537 SITE 1 BC4 3 LYS A 131 GLU A 132 EDO A 332 SITE 1 BC5 6 GLU A 34 ASP A 36 LYS A 41 THR A 43 SITE 2 BC5 6 HOH A 557 HOH A 569 SITE 1 BC6 4 ASN A 39 PHE A 223 HOH A 548 HOH A 552 SITE 1 BC7 2 HIS A 25 HOH A 503 SITE 1 BC8 5 THR A 118 ASN A 159 ASP A 190 EDO A 326 SITE 2 BC8 5 HOH A 617 SITE 1 BC9 6 LEU A 44 LYS A 45 EDO A 327 EDO A 333 SITE 2 BC9 6 HOH A 447 HOH A 541 SITE 1 CC1 3 ARG A 30 LYS A 45 EDO A 320 SITE 1 CC2 3 ARG A 215 THR A 230 EDO A 319 SITE 1 CC3 7 GLU A 172 PRO A 187 ILE A 188 GLY A 189 SITE 2 CC3 7 ASP A 190 HOH A 584 HOH A 621 SITE 1 CC4 6 ARG A 80 GLU A 90 ILE A 188 EDO A 323 SITE 2 CC4 6 HOH A 523 HOH A 588 SITE 1 CC5 6 ARG A 80 HIS A 81 GLU A 90 ILE A 229 SITE 2 CC5 6 EDO A 322 HOH A 564 SITE 1 CC6 8 SER A 99 THR A 105 EDO A 333 HOH A 412 SITE 2 CC6 8 HOH A 447 HOH A 461 HOH A 600 HOH A 601 SITE 1 CC7 5 GLU A 5 LYS A 79 LYS A 113 GLU A 115 SITE 2 CC7 5 HOH A 581 SITE 1 CC8 8 GLU A 115 GLY A 116 ASP A 117 THR A 118 SITE 2 CC8 8 ASN A 159 PRO A 192 VAL A 193 EDO A 317 SITE 1 CC9 5 SER A 208 LYS A 209 ASP A 210 EDO A 318 SITE 2 CC9 5 HOH A 600 SITE 1 DC1 3 ASN A 149 TYR A 200 SER A 202 SITE 1 DC2 5 THR A 49 GLY A 228 ILE A 229 HOH A 562 SITE 2 DC2 5 HOH A 565 SITE 1 DC3 7 LYS A 101 ASP A 102 ASP A 103 GLY A 134 SITE 2 DC3 7 ASN A 135 GLN A 177 HOH A 602 SITE 1 DC4 9 PRO A 58 THR A 59 VAL A 61 THR A 62 SITE 2 DC4 9 PHE A 100 HOX A 145 HIS A 169 ALA A 179 SITE 3 DC4 9 HIS A 181 SITE 1 DC5 4 LYS A 131 ASP A 133 GLY A 134 EDO A 313 SITE 1 DC6 4 SO4 A 302 EDO A 318 EDO A 324 HOH A 600 SITE 1 DC7 5 ARG A 80 PHE A 114 GLY A 116 LEU A 195 SITE 2 DC7 5 HOH A 631 SITE 1 DC8 6 SER A 99 LYS A 101 ASP A 180 SO4 A 302 SITE 2 DC8 6 HOH A 521 HOH A 622 SITE 1 DC9 5 ARG A 73 PRO A 75 ASP A 76 HIS A 77 SITE 2 DC9 5 HOH A 619 SITE 1 EC1 6 ASN A 146 HIS A 148 ARG A 168 HOH A 655 SITE 2 EC1 6 HOH A 656 HOH A 659 CRYST1 46.500 58.700 91.630 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010913 0.00000