data_4J8P # _entry.id 4J8P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4J8P pdb_00004j8p 10.2210/pdb4j8p/pdb RCSB RCSB077736 ? ? WWPDB D_1000077736 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417881 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4J8P _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a Putative flavoprotein (BACUNI_04544) from Bacteroides uniformis ATCC 8492 at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4J8P _cell.length_a 56.246 _cell.length_b 56.246 _cell.length_c 102.292 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4J8P _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Flavodoxin 17445.482 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 6 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 7 water nat water 18.015 196 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQKKGGKTLVAYFSATGTTARAAKLVAEAVDGTFYEIQPAKKYTAADLDWHDKASRSSVE(MSE)SDSKSRPALYSKLGS LAEYDTIYIGFPIWWNLAPRIINTFIESGDFAGKTVIPFATSGSSSISNAEKELQTNYPGINWGKGRLLNGASRETVKQW IKK ; _entity_poly.pdbx_seq_one_letter_code_can ;GQKKGGKTLVAYFSATGTTARAAKLVAEAVDGTFYEIQPAKKYTAADLDWHDKASRSSVEMSDSKSRPALYSKLGSLAEY DTIYIGFPIWWNLAPRIINTFIESGDFAGKTVIPFATSGSSSISNAEKELQTNYPGINWGKGRLLNGASRETVKQWIKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417881 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 LYS n 1 4 LYS n 1 5 GLY n 1 6 GLY n 1 7 LYS n 1 8 THR n 1 9 LEU n 1 10 VAL n 1 11 ALA n 1 12 TYR n 1 13 PHE n 1 14 SER n 1 15 ALA n 1 16 THR n 1 17 GLY n 1 18 THR n 1 19 THR n 1 20 ALA n 1 21 ARG n 1 22 ALA n 1 23 ALA n 1 24 LYS n 1 25 LEU n 1 26 VAL n 1 27 ALA n 1 28 GLU n 1 29 ALA n 1 30 VAL n 1 31 ASP n 1 32 GLY n 1 33 THR n 1 34 PHE n 1 35 TYR n 1 36 GLU n 1 37 ILE n 1 38 GLN n 1 39 PRO n 1 40 ALA n 1 41 LYS n 1 42 LYS n 1 43 TYR n 1 44 THR n 1 45 ALA n 1 46 ALA n 1 47 ASP n 1 48 LEU n 1 49 ASP n 1 50 TRP n 1 51 HIS n 1 52 ASP n 1 53 LYS n 1 54 ALA n 1 55 SER n 1 56 ARG n 1 57 SER n 1 58 SER n 1 59 VAL n 1 60 GLU n 1 61 MSE n 1 62 SER n 1 63 ASP n 1 64 SER n 1 65 LYS n 1 66 SER n 1 67 ARG n 1 68 PRO n 1 69 ALA n 1 70 LEU n 1 71 TYR n 1 72 SER n 1 73 LYS n 1 74 LEU n 1 75 GLY n 1 76 SER n 1 77 LEU n 1 78 ALA n 1 79 GLU n 1 80 TYR n 1 81 ASP n 1 82 THR n 1 83 ILE n 1 84 TYR n 1 85 ILE n 1 86 GLY n 1 87 PHE n 1 88 PRO n 1 89 ILE n 1 90 TRP n 1 91 TRP n 1 92 ASN n 1 93 LEU n 1 94 ALA n 1 95 PRO n 1 96 ARG n 1 97 ILE n 1 98 ILE n 1 99 ASN n 1 100 THR n 1 101 PHE n 1 102 ILE n 1 103 GLU n 1 104 SER n 1 105 GLY n 1 106 ASP n 1 107 PHE n 1 108 ALA n 1 109 GLY n 1 110 LYS n 1 111 THR n 1 112 VAL n 1 113 ILE n 1 114 PRO n 1 115 PHE n 1 116 ALA n 1 117 THR n 1 118 SER n 1 119 GLY n 1 120 SER n 1 121 SER n 1 122 SER n 1 123 ILE n 1 124 SER n 1 125 ASN n 1 126 ALA n 1 127 GLU n 1 128 LYS n 1 129 GLU n 1 130 LEU n 1 131 GLN n 1 132 THR n 1 133 ASN n 1 134 TYR n 1 135 PRO n 1 136 GLY n 1 137 ILE n 1 138 ASN n 1 139 TRP n 1 140 GLY n 1 141 LYS n 1 142 GLY n 1 143 ARG n 1 144 LEU n 1 145 LEU n 1 146 ASN n 1 147 GLY n 1 148 ALA n 1 149 SER n 1 150 ARG n 1 151 GLU n 1 152 THR n 1 153 VAL n 1 154 LYS n 1 155 GLN n 1 156 TRP n 1 157 ILE n 1 158 LYS n 1 159 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides uniformis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411479 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7VAB4_BACUN _struct_ref.pdbx_db_accession A7VAB4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QKKGGKTLVAYFSATGTTARAAKLVAEAVDGTFYEIQPAKKYTAADLDWHDKASRSSVEMSDSKSRPALYSKLGSLAEYD TIYIGFPIWWNLAPRIINTFIESGDFAGKTVIPFATSGSSSISNAEKELQTNYPGINWGKGRLLNGASRETVKQWIKK ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4J8P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 159 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7VAB4 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 178 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 178 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4J8P _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7VAB4 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4J8P # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '3.2000M ammonium sulfate, 0.1M TRIS pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-01-24 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97858 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength 0.97858 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4J8P _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 39.772 _reflns.number_obs 26627 _reflns.pdbx_Rmerge_I_obs 0.034 _reflns.pdbx_netI_over_sigmaI 17.500 _reflns.percent_possible_obs 97.400 _reflns.B_iso_Wilson_estimate 21.845 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.500 1.550 12772 ? 4578 0.796 1.5 ? ? ? ? ? 97.300 1 1 1.550 1.620 15661 ? 5564 0.576 2.2 ? ? ? ? ? 98.300 2 1 1.620 1.690 14117 ? 4706 0.334 3.5 ? ? ? ? ? 99.000 3 1 1.690 1.780 14713 ? 4984 0.241 4.9 ? ? ? ? ? 98.800 4 1 1.780 1.890 13372 ? 4814 0.145 7.8 ? ? ? ? ? 97.300 5 1 1.890 2.040 15364 ? 5024 0.086 13.5 ? ? ? ? ? 97.900 6 1 2.040 2.240 14350 ? 4794 0.050 21.3 ? ? ? ? ? 97.800 7 1 2.240 2.560 14010 ? 4829 0.035 29.0 ? ? ? ? ? 96.700 8 1 2.560 3.230 14985 ? 4925 0.025 39.6 ? ? ? ? ? 97.000 9 1 3.230 ? 14387 ? 4748 0.016 53.7 ? ? ? ? ? 93.800 10 1 # _refine.entry_id 4J8P _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 39.772 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.3300 _refine.ls_number_reflns_obs 26608 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. GOL, CL AND SO4 ARE PRESENT IN CRYSTALLIZATION/CRYO CONDITIONS. AN UNKNOWN LIGAND (UNL) WAS MODELED IN THE ACTIVE SITE. THE UNL RESEMBLES NITROBENZENE (NBZ) OR BENZOIC ACID. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1672 _refine.ls_R_factor_R_work 0.1661 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1882 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0100 _refine.ls_number_reflns_R_free 1332 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.0833 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.5630 _refine.aniso_B[2][2] -0.5630 _refine.aniso_B[3][3] 1.1259 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9677 _refine.correlation_coeff_Fo_to_Fc_free 0.9647 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 91.210 _refine.B_iso_min 13.500 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4J8P _refine_analyze.Luzzati_coordinate_error_obs 0.192 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1195 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 88 _refine_hist.number_atoms_solvent 196 _refine_hist.number_atoms_total 1479 _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 39.772 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 611 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 27 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 225 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1354 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 178 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1856 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1354 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1843 0.920 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.960 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.440 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.5600 _refine_ls_shell.pdbx_total_number_of_bins_used 13 _refine_ls_shell.percent_reflns_obs 98.3300 _refine_ls_shell.number_reflns_R_work 2824 _refine_ls_shell.R_factor_all 0.2150 _refine_ls_shell.R_factor_R_work 0.2135 _refine_ls_shell.R_factor_R_free 0.2418 _refine_ls_shell.percent_reflns_R_free 5.1400 _refine_ls_shell.number_reflns_R_free 153 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2977 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4J8P _struct.title 'Crystal structure of a Putative flavoprotein (BACUNI_04544) from Bacteroides uniformis ATCC 8492 at 1.50 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PF12682 family protein in complex with FMN, Flavodoxin_4, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, FLAVOPROTEIN ; _struct_keywords.pdbx_keywords FLAVOPROTEIN _struct_keywords.entry_id 4J8P # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 6 ? M N N 6 ? N N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 17 ? ASP A 31 ? GLY A 36 ASP A 50 1 ? 15 HELX_P HELX_P2 2 SER A 55 ? ASP A 63 ? SER A 74 ASP A 82 1 ? 9 HELX_P HELX_P3 3 PRO A 95 ? GLU A 103 ? PRO A 114 GLU A 122 1 ? 9 HELX_P HELX_P4 4 ILE A 123 ? TYR A 134 ? ILE A 142 TYR A 153 1 ? 12 HELX_P HELX_P5 5 SER A 149 ? LYS A 159 ? SER A 168 LYS A 178 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 60 C ? ? ? 1_555 A MSE 61 N ? ? A GLU 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale2 covale both ? A MSE 61 C ? ? ? 1_555 A SER 62 N ? ? A MSE 80 A SER 81 1_555 ? ? ? ? ? ? ? 1.357 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 33 ? GLU A 36 ? THR A 52 GLU A 55 A 2 LYS A 7 ? TYR A 12 ? LYS A 26 TYR A 31 A 3 TYR A 80 ? PRO A 88 ? TYR A 99 PRO A 107 A 4 THR A 111 ? THR A 117 ? THR A 130 THR A 136 A 5 ASN A 138 ? TRP A 139 ? ASN A 157 TRP A 158 B 1 THR A 33 ? GLU A 36 ? THR A 52 GLU A 55 B 2 LYS A 7 ? TYR A 12 ? LYS A 26 TYR A 31 B 3 TYR A 80 ? PRO A 88 ? TYR A 99 PRO A 107 B 4 THR A 111 ? THR A 117 ? THR A 130 THR A 136 B 5 ARG A 143 ? LEU A 144 ? ARG A 162 LEU A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 33 ? O THR A 52 N VAL A 10 ? N VAL A 29 A 2 3 N LEU A 9 ? N LEU A 28 O TYR A 84 ? O TYR A 103 A 3 4 N ILE A 83 ? N ILE A 102 O THR A 111 ? O THR A 130 A 4 5 N VAL A 112 ? N VAL A 131 O ASN A 138 ? O ASN A 157 B 1 2 O THR A 33 ? O THR A 52 N VAL A 10 ? N VAL A 29 B 2 3 N LEU A 9 ? N LEU A 28 O TYR A 84 ? O TYR A 103 B 3 4 N ILE A 83 ? N ILE A 102 O THR A 111 ? O THR A 130 B 4 5 N ALA A 116 ? N ALA A 135 O ARG A 143 ? O ARG A 162 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A FMN 201 ? 22 'BINDING SITE FOR RESIDUE FMN A 201' AC2 Software A GOL 203 ? 9 'BINDING SITE FOR RESIDUE GOL A 203' AC3 Software A GOL 204 ? 8 'BINDING SITE FOR RESIDUE GOL A 204' AC4 Software A GOL 205 ? 8 'BINDING SITE FOR RESIDUE GOL A 205' AC5 Software A GOL 206 ? 8 'BINDING SITE FOR RESIDUE GOL A 206' AC6 Software A GOL 207 ? 4 'BINDING SITE FOR RESIDUE GOL A 207' AC7 Software A GOL 208 ? 9 'BINDING SITE FOR RESIDUE GOL A 208' AC8 Software A SO4 209 ? 5 'BINDING SITE FOR RESIDUE SO4 A 209' AC9 Software A SO4 210 ? 11 'BINDING SITE FOR RESIDUE SO4 A 210' BC1 Software A CL 211 ? 2 'BINDING SITE FOR RESIDUE CL A 211' BC2 Software A CL 212 ? 1 'BINDING SITE FOR RESIDUE CL A 212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 SER A 14 ? SER A 33 . ? 1_555 ? 2 AC1 22 ALA A 15 ? ALA A 34 . ? 1_555 ? 3 AC1 22 THR A 16 ? THR A 35 . ? 1_555 ? 4 AC1 22 GLY A 17 ? GLY A 36 . ? 1_555 ? 5 AC1 22 THR A 18 ? THR A 37 . ? 1_555 ? 6 AC1 22 THR A 19 ? THR A 38 . ? 1_555 ? 7 AC1 22 PHE A 34 ? PHE A 53 . ? 3_545 ? 8 AC1 22 SER A 57 ? SER A 76 . ? 1_555 ? 9 AC1 22 PRO A 88 ? PRO A 107 . ? 1_555 ? 10 AC1 22 ILE A 89 ? ILE A 108 . ? 1_555 ? 11 AC1 22 TRP A 90 ? TRP A 109 . ? 1_555 ? 12 AC1 22 TRP A 91 ? TRP A 110 . ? 1_555 ? 13 AC1 22 ASN A 92 ? ASN A 111 . ? 1_555 ? 14 AC1 22 THR A 117 ? THR A 136 . ? 1_555 ? 15 AC1 22 SER A 118 ? SER A 137 . ? 1_555 ? 16 AC1 22 GLY A 119 ? GLY A 138 . ? 1_555 ? 17 AC1 22 SER A 120 ? SER A 139 . ? 1_555 ? 18 AC1 22 SER A 121 ? SER A 140 . ? 1_555 ? 19 AC1 22 HOH N . ? HOH A 314 . ? 1_555 ? 20 AC1 22 HOH N . ? HOH A 362 . ? 1_555 ? 21 AC1 22 HOH N . ? HOH A 403 . ? 1_555 ? 22 AC1 22 HOH N . ? HOH A 406 . ? 1_555 ? 23 AC2 9 TYR A 35 ? TYR A 54 . ? 1_555 ? 24 AC2 9 LEU A 74 ? LEU A 93 . ? 1_555 ? 25 AC2 9 GLY A 75 ? GLY A 94 . ? 1_555 ? 26 AC2 9 TYR A 80 ? TYR A 99 . ? 1_555 ? 27 AC2 9 GOL E . ? GOL A 204 . ? 1_555 ? 28 AC2 9 SO4 K . ? SO4 A 210 . ? 1_555 ? 29 AC2 9 HOH N . ? HOH A 332 . ? 4_554 ? 30 AC2 9 HOH N . ? HOH A 446 . ? 1_555 ? 31 AC2 9 HOH N . ? HOH A 496 . ? 1_555 ? 32 AC3 8 LYS A 73 ? LYS A 92 . ? 7_645 ? 33 AC3 8 GLY A 75 ? GLY A 94 . ? 1_555 ? 34 AC3 8 SER A 122 ? SER A 141 . ? 4_554 ? 35 AC3 8 SER A 124 ? SER A 143 . ? 4_554 ? 36 AC3 8 GOL D . ? GOL A 203 . ? 1_555 ? 37 AC3 8 SO4 K . ? SO4 A 210 . ? 1_555 ? 38 AC3 8 HOH N . ? HOH A 332 . ? 4_554 ? 39 AC3 8 HOH N . ? HOH A 361 . ? 7_645 ? 40 AC4 8 ALA A 69 ? ALA A 88 . ? 1_555 ? 41 AC4 8 LEU A 70 ? LEU A 89 . ? 1_555 ? 42 AC4 8 SER A 72 ? SER A 91 . ? 1_555 ? 43 AC4 8 LYS A 73 ? LYS A 92 . ? 1_555 ? 44 AC4 8 LYS A 128 ? LYS A 147 . ? 5_645 ? 45 AC4 8 GLN A 131 ? GLN A 150 . ? 5_645 ? 46 AC4 8 HOH N . ? HOH A 322 . ? 1_555 ? 47 AC4 8 HOH N . ? HOH A 326 . ? 1_555 ? 48 AC5 8 GLY A 17 ? GLY A 36 . ? 1_555 ? 49 AC5 8 ALA A 20 ? ALA A 39 . ? 1_555 ? 50 AC5 8 ARG A 21 ? ARG A 40 . ? 1_555 ? 51 AC5 8 SER A 58 ? SER A 77 . ? 4_554 ? 52 AC5 8 SER A 62 ? SER A 81 . ? 4_554 ? 53 AC5 8 HOH N . ? HOH A 380 . ? 1_555 ? 54 AC5 8 HOH N . ? HOH A 394 . ? 1_555 ? 55 AC5 8 HOH N . ? HOH A 434 . ? 1_555 ? 56 AC6 4 GLY A 147 ? GLY A 166 . ? 1_555 ? 57 AC6 4 HOH N . ? HOH A 347 . ? 1_555 ? 58 AC6 4 HOH N . ? HOH A 363 . ? 1_555 ? 59 AC6 4 HOH N . ? HOH A 403 . ? 1_555 ? 60 AC7 9 GLU A 103 ? GLU A 122 . ? 5_655 ? 61 AC7 9 LYS A 141 ? LYS A 160 . ? 1_555 ? 62 AC7 9 GLY A 142 ? GLY A 161 . ? 1_555 ? 63 AC7 9 ARG A 143 ? ARG A 162 . ? 1_555 ? 64 AC7 9 TRP A 156 ? TRP A 175 . ? 1_555 ? 65 AC7 9 SO4 J . ? SO4 A 209 . ? 1_555 ? 66 AC7 9 HOH N . ? HOH A 329 . ? 1_555 ? 67 AC7 9 HOH N . ? HOH A 336 . ? 5_655 ? 68 AC7 9 HOH N . ? HOH A 423 . ? 1_555 ? 69 AC8 5 GLU A 103 ? GLU A 122 . ? 5_655 ? 70 AC8 5 SER A 104 ? SER A 123 . ? 5_655 ? 71 AC8 5 LYS A 141 ? LYS A 160 . ? 1_555 ? 72 AC8 5 GOL I . ? GOL A 208 . ? 1_555 ? 73 AC8 5 HOH N . ? HOH A 416 . ? 1_555 ? 74 AC9 11 TYR A 35 ? TYR A 54 . ? 1_555 ? 75 AC9 11 SER A 72 ? SER A 91 . ? 1_555 ? 76 AC9 11 LYS A 73 ? LYS A 92 . ? 7_645 ? 77 AC9 11 SER A 124 ? SER A 143 . ? 4_554 ? 78 AC9 11 GOL D . ? GOL A 203 . ? 1_555 ? 79 AC9 11 GOL E . ? GOL A 204 . ? 1_555 ? 80 AC9 11 HOH N . ? HOH A 310 . ? 4_554 ? 81 AC9 11 HOH N . ? HOH A 327 . ? 1_555 ? 82 AC9 11 HOH N . ? HOH A 354 . ? 1_555 ? 83 AC9 11 HOH N . ? HOH A 402 . ? 7_645 ? 84 AC9 11 HOH N . ? HOH A 496 . ? 1_555 ? 85 BC1 2 TYR A 134 ? TYR A 153 . ? 1_555 ? 86 BC1 2 GLY A 136 ? GLY A 155 . ? 1_555 ? 87 BC2 1 ALA A 45 ? ALA A 64 . ? 1_555 ? # _atom_sites.entry_id 4J8P _atom_sites.fract_transf_matrix[1][1] 0.017779 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017779 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009776 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 21 ? ? ? A . n A 1 3 LYS 3 22 ? ? ? A . n A 1 4 LYS 4 23 23 LYS LYS A . n A 1 5 GLY 5 24 24 GLY GLY A . n A 1 6 GLY 6 25 25 GLY GLY A . n A 1 7 LYS 7 26 26 LYS LYS A . n A 1 8 THR 8 27 27 THR THR A . n A 1 9 LEU 9 28 28 LEU LEU A . n A 1 10 VAL 10 29 29 VAL VAL A . n A 1 11 ALA 11 30 30 ALA ALA A . n A 1 12 TYR 12 31 31 TYR TYR A . n A 1 13 PHE 13 32 32 PHE PHE A . n A 1 14 SER 14 33 33 SER SER A . n A 1 15 ALA 15 34 34 ALA ALA A . n A 1 16 THR 16 35 35 THR THR A . n A 1 17 GLY 17 36 36 GLY GLY A . n A 1 18 THR 18 37 37 THR THR A . n A 1 19 THR 19 38 38 THR THR A . n A 1 20 ALA 20 39 39 ALA ALA A . n A 1 21 ARG 21 40 40 ARG ARG A . n A 1 22 ALA 22 41 41 ALA ALA A . n A 1 23 ALA 23 42 42 ALA ALA A . n A 1 24 LYS 24 43 43 LYS LYS A . n A 1 25 LEU 25 44 44 LEU LEU A . n A 1 26 VAL 26 45 45 VAL VAL A . n A 1 27 ALA 27 46 46 ALA ALA A . n A 1 28 GLU 28 47 47 GLU GLU A . n A 1 29 ALA 29 48 48 ALA ALA A . n A 1 30 VAL 30 49 49 VAL VAL A . n A 1 31 ASP 31 50 50 ASP ASP A . n A 1 32 GLY 32 51 51 GLY GLY A . n A 1 33 THR 33 52 52 THR THR A . n A 1 34 PHE 34 53 53 PHE PHE A . n A 1 35 TYR 35 54 54 TYR TYR A . n A 1 36 GLU 36 55 55 GLU GLU A . n A 1 37 ILE 37 56 56 ILE ILE A . n A 1 38 GLN 38 57 57 GLN GLN A . n A 1 39 PRO 39 58 58 PRO PRO A . n A 1 40 ALA 40 59 59 ALA ALA A . n A 1 41 LYS 41 60 60 LYS LYS A . n A 1 42 LYS 42 61 61 LYS LYS A . n A 1 43 TYR 43 62 62 TYR TYR A . n A 1 44 THR 44 63 63 THR THR A . n A 1 45 ALA 45 64 64 ALA ALA A . n A 1 46 ALA 46 65 65 ALA ALA A . n A 1 47 ASP 47 66 66 ASP ASP A . n A 1 48 LEU 48 67 67 LEU LEU A . n A 1 49 ASP 49 68 68 ASP ASP A . n A 1 50 TRP 50 69 69 TRP TRP A . n A 1 51 HIS 51 70 70 HIS HIS A . n A 1 52 ASP 52 71 71 ASP ASP A . n A 1 53 LYS 53 72 72 LYS LYS A . n A 1 54 ALA 54 73 73 ALA ALA A . n A 1 55 SER 55 74 74 SER SER A . n A 1 56 ARG 56 75 75 ARG ARG A . n A 1 57 SER 57 76 76 SER SER A . n A 1 58 SER 58 77 77 SER SER A . n A 1 59 VAL 59 78 78 VAL VAL A . n A 1 60 GLU 60 79 79 GLU GLU A . n A 1 61 MSE 61 80 80 MSE MSE A . n A 1 62 SER 62 81 81 SER SER A . n A 1 63 ASP 63 82 82 ASP ASP A . n A 1 64 SER 64 83 83 SER SER A . n A 1 65 LYS 65 84 84 LYS LYS A . n A 1 66 SER 66 85 85 SER SER A . n A 1 67 ARG 67 86 86 ARG ARG A . n A 1 68 PRO 68 87 87 PRO PRO A . n A 1 69 ALA 69 88 88 ALA ALA A . n A 1 70 LEU 70 89 89 LEU LEU A . n A 1 71 TYR 71 90 90 TYR TYR A . n A 1 72 SER 72 91 91 SER SER A . n A 1 73 LYS 73 92 92 LYS LYS A . n A 1 74 LEU 74 93 93 LEU LEU A . n A 1 75 GLY 75 94 94 GLY GLY A . n A 1 76 SER 76 95 95 SER SER A . n A 1 77 LEU 77 96 96 LEU LEU A . n A 1 78 ALA 78 97 97 ALA ALA A . n A 1 79 GLU 79 98 98 GLU GLU A . n A 1 80 TYR 80 99 99 TYR TYR A . n A 1 81 ASP 81 100 100 ASP ASP A . n A 1 82 THR 82 101 101 THR THR A . n A 1 83 ILE 83 102 102 ILE ILE A . n A 1 84 TYR 84 103 103 TYR TYR A . n A 1 85 ILE 85 104 104 ILE ILE A . n A 1 86 GLY 86 105 105 GLY GLY A . n A 1 87 PHE 87 106 106 PHE PHE A . n A 1 88 PRO 88 107 107 PRO PRO A . n A 1 89 ILE 89 108 108 ILE ILE A . n A 1 90 TRP 90 109 109 TRP TRP A . n A 1 91 TRP 91 110 110 TRP TRP A . n A 1 92 ASN 92 111 111 ASN ASN A . n A 1 93 LEU 93 112 112 LEU LEU A . n A 1 94 ALA 94 113 113 ALA ALA A . n A 1 95 PRO 95 114 114 PRO PRO A . n A 1 96 ARG 96 115 115 ARG ARG A . n A 1 97 ILE 97 116 116 ILE ILE A . n A 1 98 ILE 98 117 117 ILE ILE A . n A 1 99 ASN 99 118 118 ASN ASN A . n A 1 100 THR 100 119 119 THR THR A . n A 1 101 PHE 101 120 120 PHE PHE A . n A 1 102 ILE 102 121 121 ILE ILE A . n A 1 103 GLU 103 122 122 GLU GLU A . n A 1 104 SER 104 123 123 SER SER A . n A 1 105 GLY 105 124 124 GLY GLY A . n A 1 106 ASP 106 125 125 ASP ASP A . n A 1 107 PHE 107 126 126 PHE PHE A . n A 1 108 ALA 108 127 127 ALA ALA A . n A 1 109 GLY 109 128 128 GLY GLY A . n A 1 110 LYS 110 129 129 LYS LYS A . n A 1 111 THR 111 130 130 THR THR A . n A 1 112 VAL 112 131 131 VAL VAL A . n A 1 113 ILE 113 132 132 ILE ILE A . n A 1 114 PRO 114 133 133 PRO PRO A . n A 1 115 PHE 115 134 134 PHE PHE A . n A 1 116 ALA 116 135 135 ALA ALA A . n A 1 117 THR 117 136 136 THR THR A . n A 1 118 SER 118 137 137 SER SER A . n A 1 119 GLY 119 138 138 GLY GLY A . n A 1 120 SER 120 139 139 SER SER A . n A 1 121 SER 121 140 140 SER SER A . n A 1 122 SER 122 141 141 SER SER A . n A 1 123 ILE 123 142 142 ILE ILE A . n A 1 124 SER 124 143 143 SER SER A . n A 1 125 ASN 125 144 144 ASN ASN A . n A 1 126 ALA 126 145 145 ALA ALA A . n A 1 127 GLU 127 146 146 GLU GLU A . n A 1 128 LYS 128 147 147 LYS LYS A . n A 1 129 GLU 129 148 148 GLU GLU A . n A 1 130 LEU 130 149 149 LEU LEU A . n A 1 131 GLN 131 150 150 GLN GLN A . n A 1 132 THR 132 151 151 THR THR A . n A 1 133 ASN 133 152 152 ASN ASN A . n A 1 134 TYR 134 153 153 TYR TYR A . n A 1 135 PRO 135 154 154 PRO PRO A . n A 1 136 GLY 136 155 155 GLY GLY A . n A 1 137 ILE 137 156 156 ILE ILE A . n A 1 138 ASN 138 157 157 ASN ASN A . n A 1 139 TRP 139 158 158 TRP TRP A . n A 1 140 GLY 140 159 159 GLY GLY A . n A 1 141 LYS 141 160 160 LYS LYS A . n A 1 142 GLY 142 161 161 GLY GLY A . n A 1 143 ARG 143 162 162 ARG ARG A . n A 1 144 LEU 144 163 163 LEU LEU A . n A 1 145 LEU 145 164 164 LEU LEU A . n A 1 146 ASN 146 165 165 ASN ASN A . n A 1 147 GLY 147 166 166 GLY GLY A . n A 1 148 ALA 148 167 167 ALA ALA A . n A 1 149 SER 149 168 168 SER SER A . n A 1 150 ARG 150 169 169 ARG ARG A . n A 1 151 GLU 151 170 170 GLU GLU A . n A 1 152 THR 152 171 171 THR THR A . n A 1 153 VAL 153 172 172 VAL VAL A . n A 1 154 LYS 154 173 173 LYS LYS A . n A 1 155 GLN 155 174 174 GLN GLN A . n A 1 156 TRP 156 175 175 TRP TRP A . n A 1 157 ILE 157 176 176 ILE ILE A . n A 1 158 LYS 158 177 177 LYS LYS A . n A 1 159 LYS 159 178 178 LYS LYS A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 201 180 FMN FMN A . C 3 UNL 1 202 201 UNL UNL A . D 4 GOL 1 203 205 GOL GOL A . E 4 GOL 1 204 206 GOL GOL A . F 4 GOL 1 205 207 GOL GOL A . G 4 GOL 1 206 208 GOL GOL A . H 4 GOL 1 207 209 GOL GOL A . I 4 GOL 1 208 210 GOL GOL A . J 5 SO4 1 209 211 SO4 SO4 A . K 5 SO4 1 210 212 SO4 SO4 A . L 6 CL 1 211 213 CL CL A . M 6 CL 1 212 214 CL CL A . N 7 HOH 1 301 215 HOH HOH A . N 7 HOH 2 302 216 HOH HOH A . N 7 HOH 3 303 217 HOH HOH A . N 7 HOH 4 304 218 HOH HOH A . N 7 HOH 5 305 219 HOH HOH A . N 7 HOH 6 306 220 HOH HOH A . N 7 HOH 7 307 221 HOH HOH A . N 7 HOH 8 308 222 HOH HOH A . N 7 HOH 9 309 223 HOH HOH A . N 7 HOH 10 310 224 HOH HOH A . N 7 HOH 11 311 225 HOH HOH A . N 7 HOH 12 312 226 HOH HOH A . N 7 HOH 13 313 227 HOH HOH A . N 7 HOH 14 314 228 HOH HOH A . N 7 HOH 15 315 229 HOH HOH A . N 7 HOH 16 316 230 HOH HOH A . N 7 HOH 17 317 231 HOH HOH A . N 7 HOH 18 318 232 HOH HOH A . N 7 HOH 19 319 233 HOH HOH A . N 7 HOH 20 320 234 HOH HOH A . N 7 HOH 21 321 235 HOH HOH A . N 7 HOH 22 322 236 HOH HOH A . N 7 HOH 23 323 237 HOH HOH A . N 7 HOH 24 324 238 HOH HOH A . N 7 HOH 25 325 239 HOH HOH A . N 7 HOH 26 326 240 HOH HOH A . N 7 HOH 27 327 241 HOH HOH A . N 7 HOH 28 328 242 HOH HOH A . N 7 HOH 29 329 243 HOH HOH A . N 7 HOH 30 330 244 HOH HOH A . N 7 HOH 31 331 245 HOH HOH A . N 7 HOH 32 332 246 HOH HOH A . N 7 HOH 33 333 247 HOH HOH A . N 7 HOH 34 334 248 HOH HOH A . N 7 HOH 35 335 249 HOH HOH A . N 7 HOH 36 336 250 HOH HOH A . N 7 HOH 37 337 251 HOH HOH A . N 7 HOH 38 338 252 HOH HOH A . N 7 HOH 39 339 253 HOH HOH A . N 7 HOH 40 340 254 HOH HOH A . N 7 HOH 41 341 255 HOH HOH A . N 7 HOH 42 342 256 HOH HOH A . N 7 HOH 43 343 257 HOH HOH A . N 7 HOH 44 344 258 HOH HOH A . N 7 HOH 45 345 259 HOH HOH A . N 7 HOH 46 346 260 HOH HOH A . N 7 HOH 47 347 261 HOH HOH A . N 7 HOH 48 348 262 HOH HOH A . N 7 HOH 49 349 263 HOH HOH A . N 7 HOH 50 350 264 HOH HOH A . N 7 HOH 51 351 265 HOH HOH A . N 7 HOH 52 352 266 HOH HOH A . N 7 HOH 53 353 267 HOH HOH A . N 7 HOH 54 354 268 HOH HOH A . N 7 HOH 55 355 269 HOH HOH A . N 7 HOH 56 356 270 HOH HOH A . N 7 HOH 57 357 271 HOH HOH A . N 7 HOH 58 358 272 HOH HOH A . N 7 HOH 59 359 273 HOH HOH A . N 7 HOH 60 360 274 HOH HOH A . N 7 HOH 61 361 275 HOH HOH A . N 7 HOH 62 362 276 HOH HOH A . N 7 HOH 63 363 277 HOH HOH A . N 7 HOH 64 364 278 HOH HOH A . N 7 HOH 65 365 279 HOH HOH A . N 7 HOH 66 366 280 HOH HOH A . N 7 HOH 67 367 281 HOH HOH A . N 7 HOH 68 368 282 HOH HOH A . N 7 HOH 69 369 283 HOH HOH A . N 7 HOH 70 370 284 HOH HOH A . N 7 HOH 71 371 285 HOH HOH A . N 7 HOH 72 372 286 HOH HOH A . N 7 HOH 73 373 287 HOH HOH A . N 7 HOH 74 374 288 HOH HOH A . N 7 HOH 75 375 289 HOH HOH A . N 7 HOH 76 376 290 HOH HOH A . N 7 HOH 77 377 291 HOH HOH A . N 7 HOH 78 378 292 HOH HOH A . N 7 HOH 79 379 293 HOH HOH A . N 7 HOH 80 380 294 HOH HOH A . N 7 HOH 81 381 295 HOH HOH A . N 7 HOH 82 382 296 HOH HOH A . N 7 HOH 83 383 297 HOH HOH A . N 7 HOH 84 384 298 HOH HOH A . N 7 HOH 85 385 299 HOH HOH A . N 7 HOH 86 386 300 HOH HOH A . N 7 HOH 87 387 301 HOH HOH A . N 7 HOH 88 388 302 HOH HOH A . N 7 HOH 89 389 303 HOH HOH A . N 7 HOH 90 390 304 HOH HOH A . N 7 HOH 91 391 305 HOH HOH A . N 7 HOH 92 392 306 HOH HOH A . N 7 HOH 93 393 307 HOH HOH A . N 7 HOH 94 394 308 HOH HOH A . N 7 HOH 95 395 309 HOH HOH A . N 7 HOH 96 396 310 HOH HOH A . N 7 HOH 97 397 311 HOH HOH A . N 7 HOH 98 398 312 HOH HOH A . N 7 HOH 99 399 313 HOH HOH A . N 7 HOH 100 400 314 HOH HOH A . N 7 HOH 101 401 315 HOH HOH A . N 7 HOH 102 402 316 HOH HOH A . N 7 HOH 103 403 317 HOH HOH A . N 7 HOH 104 404 318 HOH HOH A . N 7 HOH 105 405 319 HOH HOH A . N 7 HOH 106 406 320 HOH HOH A . N 7 HOH 107 407 321 HOH HOH A . N 7 HOH 108 408 322 HOH HOH A . N 7 HOH 109 409 323 HOH HOH A . N 7 HOH 110 410 324 HOH HOH A . N 7 HOH 111 411 325 HOH HOH A . N 7 HOH 112 412 326 HOH HOH A . N 7 HOH 113 413 327 HOH HOH A . N 7 HOH 114 414 328 HOH HOH A . N 7 HOH 115 415 329 HOH HOH A . N 7 HOH 116 416 330 HOH HOH A . N 7 HOH 117 417 331 HOH HOH A . N 7 HOH 118 418 332 HOH HOH A . N 7 HOH 119 419 333 HOH HOH A . N 7 HOH 120 420 334 HOH HOH A . N 7 HOH 121 421 335 HOH HOH A . N 7 HOH 122 422 336 HOH HOH A . N 7 HOH 123 423 337 HOH HOH A . N 7 HOH 124 424 338 HOH HOH A . N 7 HOH 125 425 339 HOH HOH A . N 7 HOH 126 426 340 HOH HOH A . N 7 HOH 127 427 341 HOH HOH A . N 7 HOH 128 428 342 HOH HOH A . N 7 HOH 129 429 343 HOH HOH A . N 7 HOH 130 430 344 HOH HOH A . N 7 HOH 131 431 345 HOH HOH A . N 7 HOH 132 432 346 HOH HOH A . N 7 HOH 133 433 347 HOH HOH A . N 7 HOH 134 434 348 HOH HOH A . N 7 HOH 135 435 349 HOH HOH A . N 7 HOH 136 436 350 HOH HOH A . N 7 HOH 137 437 351 HOH HOH A . N 7 HOH 138 438 352 HOH HOH A . N 7 HOH 139 439 353 HOH HOH A . N 7 HOH 140 440 354 HOH HOH A . N 7 HOH 141 441 355 HOH HOH A . N 7 HOH 142 442 356 HOH HOH A . N 7 HOH 143 443 357 HOH HOH A . N 7 HOH 144 444 358 HOH HOH A . N 7 HOH 145 445 359 HOH HOH A . N 7 HOH 146 446 360 HOH HOH A . N 7 HOH 147 447 361 HOH HOH A . N 7 HOH 148 448 362 HOH HOH A . N 7 HOH 149 449 363 HOH HOH A . N 7 HOH 150 450 364 HOH HOH A . N 7 HOH 151 451 365 HOH HOH A . N 7 HOH 152 452 366 HOH HOH A . N 7 HOH 153 453 367 HOH HOH A . N 7 HOH 154 454 368 HOH HOH A . N 7 HOH 155 455 369 HOH HOH A . N 7 HOH 156 456 370 HOH HOH A . N 7 HOH 157 457 371 HOH HOH A . N 7 HOH 158 458 372 HOH HOH A . N 7 HOH 159 459 373 HOH HOH A . N 7 HOH 160 460 374 HOH HOH A . N 7 HOH 161 461 375 HOH HOH A . N 7 HOH 162 462 376 HOH HOH A . N 7 HOH 163 463 377 HOH HOH A . N 7 HOH 164 464 378 HOH HOH A . N 7 HOH 165 465 379 HOH HOH A . N 7 HOH 166 466 380 HOH HOH A . N 7 HOH 167 467 381 HOH HOH A . N 7 HOH 168 468 382 HOH HOH A . N 7 HOH 169 469 383 HOH HOH A . N 7 HOH 170 470 384 HOH HOH A . N 7 HOH 171 471 385 HOH HOH A . N 7 HOH 172 472 386 HOH HOH A . N 7 HOH 173 473 387 HOH HOH A . N 7 HOH 174 474 388 HOH HOH A . N 7 HOH 175 475 389 HOH HOH A . N 7 HOH 176 476 390 HOH HOH A . N 7 HOH 177 477 391 HOH HOH A . N 7 HOH 178 478 392 HOH HOH A . N 7 HOH 179 479 393 HOH HOH A . N 7 HOH 180 480 394 HOH HOH A . N 7 HOH 181 481 395 HOH HOH A . N 7 HOH 182 482 396 HOH HOH A . N 7 HOH 183 483 397 HOH HOH A . N 7 HOH 184 484 398 HOH HOH A . N 7 HOH 185 485 399 HOH HOH A . N 7 HOH 186 486 400 HOH HOH A . N 7 HOH 187 487 401 HOH HOH A . N 7 HOH 188 488 402 HOH HOH A . N 7 HOH 189 489 403 HOH HOH A . N 7 HOH 190 490 404 HOH HOH A . N 7 HOH 191 491 405 HOH HOH A . N 7 HOH 192 492 406 HOH HOH A . N 7 HOH 193 493 407 HOH HOH A . N 7 HOH 194 494 408 HOH HOH A . N 7 HOH 195 495 409 HOH HOH A . N 7 HOH 196 496 410 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 61 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 80 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-03-13 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' citation_author 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 36.3288 _pdbx_refine_tls.origin_y 5.0571 _pdbx_refine_tls.origin_z 9.4730 _pdbx_refine_tls.T[1][1] -0.0100 _pdbx_refine_tls.T[2][2] -0.0571 _pdbx_refine_tls.T[3][3] -0.0454 _pdbx_refine_tls.T[1][2] -0.0112 _pdbx_refine_tls.T[1][3] 0.0147 _pdbx_refine_tls.T[2][3] -0.0069 _pdbx_refine_tls.L[1][1] 0.9877 _pdbx_refine_tls.L[2][2] 1.5104 _pdbx_refine_tls.L[3][3] 1.1738 _pdbx_refine_tls.L[1][2] 0.0598 _pdbx_refine_tls.L[1][3] -0.1279 _pdbx_refine_tls.L[2][3] -0.0408 _pdbx_refine_tls.S[1][1] -0.0253 _pdbx_refine_tls.S[2][2] -0.0274 _pdbx_refine_tls.S[3][3] 0.0527 _pdbx_refine_tls.S[1][2] 0.0890 _pdbx_refine_tls.S[1][3] 0.0489 _pdbx_refine_tls.S[2][3] -0.0823 _pdbx_refine_tls.S[2][1] -0.0620 _pdbx_refine_tls.S[3][1] 0.0475 _pdbx_refine_tls.S[3][2] -0.0736 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 23 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 201 _pdbx_refine_tls_group.selection_details '{A|23 - 178}' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT . ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4J8P _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE THE CONSTRUCT (21-178) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 139 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -164.41 _pdbx_validate_torsion.psi -23.63 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 23 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 23 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 23 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 23 ? NZ ? A LYS 4 NZ 5 1 Y 1 A LYS 61 ? CD ? A LYS 42 CD 6 1 Y 1 A LYS 61 ? CE ? A LYS 42 CE 7 1 Y 1 A LYS 61 ? NZ ? A LYS 42 NZ 8 1 Y 1 A ARG 169 ? CG ? A ARG 150 CG 9 1 Y 1 A ARG 169 ? CD ? A ARG 150 CD 10 1 Y 1 A ARG 169 ? NE ? A ARG 150 NE 11 1 Y 1 A ARG 169 ? CZ ? A ARG 150 CZ 12 1 Y 1 A ARG 169 ? NH1 ? A ARG 150 NH1 13 1 Y 1 A ARG 169 ? NH2 ? A ARG 150 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 21 ? A GLN 2 3 1 Y 1 A LYS 22 ? A LYS 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'UNKNOWN LIGAND' UNL 4 GLYCEROL GOL 5 'SULFATE ION' SO4 6 'CHLORIDE ION' CL 7 water HOH #