HEADER METAL TRANSPORT 15-FEB-13 4J91 TITLE DIAMOND-SHAPED OCTAMERIC STRUCTURE OF KTRA WITH ADP BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: KTR SYSTEM POTASSIUM UPTAKE PROTEIN A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: K(+)-UPTAKE PROTEIN KTRA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: KTRA, YUAA, BSU31090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL 21 (DE3) KEYWDS DIAMOND-SHAPED OCTAMERIC RING, RCK DOMAIN, POTASSIUM TRANSPORT KEYWDS 2 REGULATION, KTRB MEMBRANE PROTEIN, CYTOSOL, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.S.VIEIRA-PIRES,J.H.MORAIS-CABRAL REVDAT 3 08-NOV-23 4J91 1 REMARK REVDAT 2 07-AUG-13 4J91 1 JRNL REVDAT 1 17-APR-13 4J91 0 JRNL AUTH R.S.VIEIRA-PIRES,A.SZOLLOSI,J.H.MORAIS-CABRAL JRNL TITL THE STRUCTURE OF THE KTRAB POTASSIUM TRANSPORTER JRNL REF NATURE V. 496 323 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 23598340 JRNL DOI 10.1038/NATURE12055 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1607 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.85000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : 4.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.450 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.384 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.290 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6735 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9123 ; 1.352 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 835 ; 5.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;34.271 ;25.254 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1196 ;17.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;22.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1066 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4906 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 A (A**2): 1038 ; 5.810 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 1038 ;10.030 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 1038 ; 9.090 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 1038 ; 8.300 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 A (A**2): 396 ;13.310 ; 0.500 REMARK 3 TIGHT THERMAL 2 B (A**2): 396 ;16.700 ; 0.500 REMARK 3 TIGHT THERMAL 2 C (A**2): 396 ;16.200 ; 0.500 REMARK 3 TIGHT THERMAL 2 D (A**2): 396 ; 7.510 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3653 43.5005 -14.8893 REMARK 3 T TENSOR REMARK 3 T11: 0.3364 T22: 0.0316 REMARK 3 T33: 0.3209 T12: 0.0714 REMARK 3 T13: -0.1010 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 5.5381 L22: 4.4890 REMARK 3 L33: 3.8412 L12: 0.5120 REMARK 3 L13: -0.4034 L23: 2.5252 REMARK 3 S TENSOR REMARK 3 S11: -0.3787 S12: 0.0398 S13: 0.4018 REMARK 3 S21: -0.0519 S22: 0.0752 S23: 0.5479 REMARK 3 S31: -0.8107 S32: -0.1811 S33: 0.3035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4545 33.4765 -21.6918 REMARK 3 T TENSOR REMARK 3 T11: 0.3661 T22: 0.6756 REMARK 3 T33: 0.5639 T12: 0.2053 REMARK 3 T13: -0.2326 T23: -0.2357 REMARK 3 L TENSOR REMARK 3 L11: 12.2878 L22: 21.8591 REMARK 3 L33: 4.5019 L12: -3.2004 REMARK 3 L13: -2.2549 L23: -8.6273 REMARK 3 S TENSOR REMARK 3 S11: -1.0699 S12: 0.7191 S13: -0.0761 REMARK 3 S21: 0.3683 S22: 1.2614 S23: 0.5866 REMARK 3 S31: 0.0371 S32: -0.9525 S33: -0.1915 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2195 25.3760 -17.6741 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1695 REMARK 3 T33: 0.2517 T12: -0.1237 REMARK 3 T13: 0.0484 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 1.0921 L22: 3.6406 REMARK 3 L33: 4.3093 L12: -1.1133 REMARK 3 L13: 1.3715 L23: -2.1270 REMARK 3 S TENSOR REMARK 3 S11: -0.1299 S12: 0.3111 S13: -0.1704 REMARK 3 S21: -0.4389 S22: 0.0630 S23: -0.0731 REMARK 3 S31: 0.0560 S32: 0.1931 S33: 0.0669 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3667 26.2895 -17.4284 REMARK 3 T TENSOR REMARK 3 T11: 1.1651 T22: 0.3676 REMARK 3 T33: 1.2887 T12: 0.0234 REMARK 3 T13: -0.0364 T23: 0.2237 REMARK 3 L TENSOR REMARK 3 L11: 21.1065 L22: 21.5267 REMARK 3 L33: 45.7970 L12: -5.7380 REMARK 3 L13: 21.1392 L23: 16.4071 REMARK 3 S TENSOR REMARK 3 S11: 2.2120 S12: -0.4607 S13: -2.0096 REMARK 3 S21: -4.8187 S22: -0.4390 S23: 0.4951 REMARK 3 S31: -2.5556 S32: -1.1135 S33: -1.7731 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 65.0164 25.7510 -10.9057 REMARK 3 T TENSOR REMARK 3 T11: 0.9877 T22: 0.5478 REMARK 3 T33: 0.8231 T12: 0.4847 REMARK 3 T13: 0.0879 T23: 0.3001 REMARK 3 L TENSOR REMARK 3 L11: 17.1028 L22: 11.4070 REMARK 3 L33: 25.4430 L12: -3.2589 REMARK 3 L13: -9.5710 L23: -10.9908 REMARK 3 S TENSOR REMARK 3 S11: -2.1977 S12: -0.8229 S13: -0.6148 REMARK 3 S21: 1.5918 S22: -0.4690 S23: -1.1592 REMARK 3 S31: 1.5170 S32: 2.7053 S33: 2.6667 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 59.6452 28.0178 -12.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.1348 T22: 0.4923 REMARK 3 T33: 0.8033 T12: 0.1627 REMARK 3 T13: 0.1496 T23: 0.2401 REMARK 3 L TENSOR REMARK 3 L11: 8.0756 L22: 14.0976 REMARK 3 L33: 8.6104 L12: 2.0139 REMARK 3 L13: -1.1353 L23: -9.6467 REMARK 3 S TENSOR REMARK 3 S11: -0.6194 S12: -0.8997 S13: -0.5335 REMARK 3 S21: 0.4353 S22: 0.1139 S23: -0.9002 REMARK 3 S31: -0.1056 S32: 0.4866 S33: 0.5055 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8099 9.6985 -3.7703 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.0395 REMARK 3 T33: 0.2594 T12: 0.0066 REMARK 3 T13: -0.0695 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 3.7436 L22: 2.9276 REMARK 3 L33: 4.1314 L12: -1.4807 REMARK 3 L13: -0.6324 L23: -0.6977 REMARK 3 S TENSOR REMARK 3 S11: 0.2250 S12: 0.1545 S13: -0.4759 REMARK 3 S21: -0.3699 S22: 0.0892 S23: 0.1592 REMARK 3 S31: 0.5461 S32: 0.1127 S33: -0.3142 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1529 12.5368 3.5111 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.0760 REMARK 3 T33: 0.2179 T12: 0.0496 REMARK 3 T13: -0.0774 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 12.3891 L22: 9.6628 REMARK 3 L33: 8.5754 L12: -2.6124 REMARK 3 L13: -2.6458 L23: -3.6329 REMARK 3 S TENSOR REMARK 3 S11: -0.2407 S12: -0.5152 S13: -0.4191 REMARK 3 S21: 0.0462 S22: 0.0536 S23: 0.0568 REMARK 3 S31: -0.0037 S32: 0.4918 S33: 0.1871 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8832 19.1077 7.4439 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1197 REMARK 3 T33: 0.2311 T12: 0.0559 REMARK 3 T13: -0.0199 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 6.2720 L22: 1.6409 REMARK 3 L33: 6.3820 L12: 0.7900 REMARK 3 L13: 2.1384 L23: -1.0489 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.3613 S13: -0.2709 REMARK 3 S21: 0.2495 S22: 0.3060 S23: -0.0526 REMARK 3 S31: 0.2307 S32: -0.1777 S33: -0.3861 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2081 31.1028 -2.6245 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.1441 REMARK 3 T33: 0.2688 T12: -0.0237 REMARK 3 T13: -0.0567 T23: -0.0916 REMARK 3 L TENSOR REMARK 3 L11: 0.8718 L22: 0.5352 REMARK 3 L33: 6.3119 L12: -0.4333 REMARK 3 L13: 2.0614 L23: -0.9613 REMARK 3 S TENSOR REMARK 3 S11: -0.2721 S12: 0.0785 S13: -0.0682 REMARK 3 S21: 0.2619 S22: 0.1373 S23: -0.1896 REMARK 3 S31: -0.7246 S32: 0.3231 S33: 0.1348 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4568 36.2482 -28.6581 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.1627 REMARK 3 T33: 0.3554 T12: -0.1535 REMARK 3 T13: 0.1524 T23: -0.1552 REMARK 3 L TENSOR REMARK 3 L11: 8.8031 L22: 3.9483 REMARK 3 L33: 8.2855 L12: 0.3460 REMARK 3 L13: -2.1506 L23: 0.4184 REMARK 3 S TENSOR REMARK 3 S11: -0.3601 S12: 0.5279 S13: -1.1846 REMARK 3 S21: -0.2289 S22: 0.1106 S23: 0.2768 REMARK 3 S31: -0.1623 S32: -0.4989 S33: 0.2496 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 222 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5617 34.1359 -31.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2895 REMARK 3 T33: 0.3739 T12: -0.1759 REMARK 3 T13: 0.1208 T23: -0.2243 REMARK 3 L TENSOR REMARK 3 L11: 3.6449 L22: 8.3310 REMARK 3 L33: 7.2812 L12: -3.1820 REMARK 3 L13: 2.1892 L23: -0.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: 0.4374 S13: -0.5722 REMARK 3 S21: 0.3644 S22: -0.1714 S23: 0.3760 REMARK 3 S31: 0.5869 S32: 0.1154 S33: 0.0637 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 45 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8339 8.7685 26.7531 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.2018 REMARK 3 T33: 0.2387 T12: 0.1686 REMARK 3 T13: 0.0723 T23: 0.0908 REMARK 3 L TENSOR REMARK 3 L11: 2.7370 L22: 6.5185 REMARK 3 L33: 3.8790 L12: -0.2733 REMARK 3 L13: -0.0373 L23: 1.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.1550 S12: -0.0294 S13: -0.3832 REMARK 3 S21: -0.1680 S22: -0.1869 S23: -0.2464 REMARK 3 S31: 0.2190 S32: 0.0823 S33: 0.3419 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 46 C 99 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2241 10.2015 26.0221 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.2329 REMARK 3 T33: 0.2745 T12: 0.0576 REMARK 3 T13: 0.0279 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 4.0727 L22: 4.1113 REMARK 3 L33: 4.8753 L12: -1.3189 REMARK 3 L13: 0.7394 L23: 0.5976 REMARK 3 S TENSOR REMARK 3 S11: -0.2940 S12: -0.1571 S13: -0.8239 REMARK 3 S21: -0.2959 S22: 0.0622 S23: 0.6698 REMARK 3 S31: 0.0493 S32: -0.4572 S33: 0.2318 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 100 C 127 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7537 25.0905 30.6278 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.3886 REMARK 3 T33: 0.1783 T12: 0.2162 REMARK 3 T13: -0.0665 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 5.1255 L22: 4.5693 REMARK 3 L33: 0.5397 L12: 1.6137 REMARK 3 L13: -1.3847 L23: 0.2042 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: -0.4210 S13: 0.2422 REMARK 3 S21: 0.0873 S22: 0.0108 S23: 0.3055 REMARK 3 S31: -0.0916 S32: -0.0072 S33: -0.0151 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 128 C 157 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9044 30.0385 44.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.4733 T22: 0.5343 REMARK 3 T33: 0.0971 T12: 0.0599 REMARK 3 T13: -0.1808 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.5151 L22: 7.7635 REMARK 3 L33: 10.2125 L12: -0.1346 REMARK 3 L13: 2.2327 L23: -2.5072 REMARK 3 S TENSOR REMARK 3 S11: 0.1014 S12: -0.0483 S13: -0.0345 REMARK 3 S21: 0.4875 S22: -0.1841 S23: -0.6095 REMARK 3 S31: 0.0365 S32: -0.1598 S33: 0.0826 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 161 C 182 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3494 30.0291 59.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.7034 T22: 0.5567 REMARK 3 T33: 0.4989 T12: -0.0731 REMARK 3 T13: -0.2150 T23: 0.1913 REMARK 3 L TENSOR REMARK 3 L11: 0.1701 L22: 5.5551 REMARK 3 L33: 10.2512 L12: 0.3871 REMARK 3 L13: -0.9405 L23: 2.6129 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.0002 S13: 0.0095 REMARK 3 S21: -1.1785 S22: -0.2870 S23: -0.1062 REMARK 3 S31: -1.2677 S32: -0.1621 S33: 0.1982 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 183 C 222 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3999 26.7255 53.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.7052 T22: 0.6778 REMARK 3 T33: 0.7519 T12: -0.1799 REMARK 3 T13: -0.0560 T23: 0.1744 REMARK 3 L TENSOR REMARK 3 L11: 0.9181 L22: 7.7045 REMARK 3 L33: 2.4734 L12: 2.2798 REMARK 3 L13: -0.1916 L23: 0.1325 REMARK 3 S TENSOR REMARK 3 S11: 0.2527 S12: -0.3087 S13: -0.2713 REMARK 3 S21: -0.3727 S22: -0.5041 S23: -1.4661 REMARK 3 S31: -0.2929 S32: 0.2614 S33: 0.2513 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 8 D 96 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1277 40.5228 24.4913 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.0707 REMARK 3 T33: 0.1256 T12: 0.0917 REMARK 3 T13: -0.0310 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 2.8066 L22: 3.2702 REMARK 3 L33: 4.6680 L12: -0.4607 REMARK 3 L13: -0.1811 L23: -0.3294 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: -0.1098 S13: 0.4194 REMARK 3 S21: 0.1940 S22: 0.1082 S23: -0.0624 REMARK 3 S31: -0.6135 S32: 0.0433 S33: 0.0141 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 97 D 143 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7196 22.7505 28.7714 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.3023 REMARK 3 T33: 0.2338 T12: 0.1509 REMARK 3 T13: -0.0176 T23: 0.0738 REMARK 3 L TENSOR REMARK 3 L11: 3.4136 L22: 1.7376 REMARK 3 L33: 1.9789 L12: 1.3779 REMARK 3 L13: -2.4546 L23: -0.5289 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.3677 S13: -0.3475 REMARK 3 S21: 0.0151 S22: -0.0433 S23: -0.5295 REMARK 3 S31: -0.0740 S32: 0.2259 S33: 0.0509 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 144 D 157 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8166 16.3336 49.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.7139 T22: 0.9066 REMARK 3 T33: 0.6593 T12: 0.4628 REMARK 3 T13: -0.3824 T23: -0.2812 REMARK 3 L TENSOR REMARK 3 L11: 34.0784 L22: 2.9937 REMARK 3 L33: 9.5643 L12: -6.2892 REMARK 3 L13: -9.2675 L23: -1.3747 REMARK 3 S TENSOR REMARK 3 S11: -1.2487 S12: -0.1787 S13: -1.3426 REMARK 3 S21: 1.2533 S22: 0.5673 S23: -0.2637 REMARK 3 S31: -0.9097 S32: 0.3998 S33: 0.6814 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 158 D 166 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1741 18.0416 58.9803 REMARK 3 T TENSOR REMARK 3 T11: 1.1611 T22: 1.2866 REMARK 3 T33: 1.3299 T12: 0.0696 REMARK 3 T13: 0.0464 T23: 0.2250 REMARK 3 L TENSOR REMARK 3 L11: 4.4810 L22: 5.9984 REMARK 3 L33: 26.5171 L12: 2.7059 REMARK 3 L13: -5.0766 L23: -12.5625 REMARK 3 S TENSOR REMARK 3 S11: -1.5010 S12: -0.0171 S13: 0.5355 REMARK 3 S21: 0.0249 S22: -0.5424 S23: -0.6607 REMARK 3 S31: -0.2340 S32: 1.5315 S33: 2.0434 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 167 D 185 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0811 18.1801 62.2555 REMARK 3 T TENSOR REMARK 3 T11: 0.8945 T22: 1.5323 REMARK 3 T33: 0.2609 T12: 0.2555 REMARK 3 T13: 0.0303 T23: 0.5071 REMARK 3 L TENSOR REMARK 3 L11: 2.5350 L22: 14.0104 REMARK 3 L33: 14.6377 L12: 4.0262 REMARK 3 L13: 3.0825 L23: -3.2919 REMARK 3 S TENSOR REMARK 3 S11: 0.2239 S12: -0.8947 S13: -0.5396 REMARK 3 S21: 1.3790 S22: 0.4367 S23: -0.4228 REMARK 3 S31: -0.8100 S32: -1.7390 S33: -0.6606 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 186 D 222 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3156 18.0940 56.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.7387 T22: 0.7871 REMARK 3 T33: 0.2228 T12: 0.1068 REMARK 3 T13: -0.0227 T23: 0.2805 REMARK 3 L TENSOR REMARK 3 L11: 10.0943 L22: 5.1831 REMARK 3 L33: 2.9465 L12: 6.0251 REMARK 3 L13: 4.6317 L23: 2.7172 REMARK 3 S TENSOR REMARK 3 S11: 0.4553 S12: -1.3577 S13: -0.5958 REMARK 3 S21: 0.9488 S22: -0.4257 S23: 0.0051 REMARK 3 S31: 0.0242 S32: -0.3256 S33: -0.0297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4J91 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.781 REMARK 200 RESOLUTION RANGE LOW (A) : 89.123 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82700 REMARK 200 R SYM FOR SHELL (I) : 0.82700 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: 2HMT, 2HMU, 2HMV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE PH5.6, 14.5% POLYETHYLENE REMARK 280 GLYCOL 2000, 0.2M AMMONIUM SULPHATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.96600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.96600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 LYS A 7 REMARK 465 SER A 148 REMARK 465 ASP A 149 REMARK 465 GLU A 150 REMARK 465 TYR A 151 REMARK 465 ALA A 158 REMARK 465 THR A 159 REMARK 465 ARG A 160 REMARK 465 LYS A 161 REMARK 465 LYS A 175 REMARK 465 TYR A 176 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 ILE B 4 REMARK 465 LYS B 5 REMARK 465 ASN B 6 REMARK 465 LYS B 7 REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 ILE C 4 REMARK 465 LYS C 5 REMARK 465 ASN C 6 REMARK 465 LYS C 7 REMARK 465 ALA C 158 REMARK 465 THR C 159 REMARK 465 ARG C 160 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ARG D 3 REMARK 465 ILE D 4 REMARK 465 LYS D 5 REMARK 465 ASN D 6 REMARK 465 LYS D 7 REMARK 465 PRO D 193 REMARK 465 ALA D 194 REMARK 465 PRO D 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 184 OD1 ASP A 203 1.70 REMARK 500 O LEU C 181 O LEU C 191 2.11 REMARK 500 O LEU A 181 O LEU A 191 2.11 REMARK 500 O LEU B 181 O LEU B 191 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN C 202 OE1 GLN C 202 2656 1.03 REMARK 500 CD2 LEU C 157 OE1 GLU C 201 2656 1.60 REMARK 500 NH2 ARG A 173 CD1 ILE D 198 1554 1.94 REMARK 500 OG SER D 47 NZ LYS D 161 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER C 135 CB SER C 135 OG 0.092 REMARK 500 GLU D 196 CD GLU D 196 OE1 -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 201 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU C 136 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ILE D 78 N - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 1.33 -68.10 REMARK 500 ASN B 70 1.03 -67.84 REMARK 500 ASN C 70 0.45 -67.85 REMARK 500 PRO C 195 -19.92 -49.63 REMARK 500 ASN D 70 0.52 -66.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP D 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HMS RELATED DB: PDB REMARK 900 RECTANGULAR-SHAPED OCTAMERIC RING STRUCTURE OF AN RCK DOMAIN WITH REMARK 900 NADH BOUND REMARK 900 RELATED ID: 2HMT RELATED DB: PDB REMARK 900 DIAMOND-SHAPED OCTAMERIC RING STRUCTURE OF AN RCK DOMAIN WITH NADH REMARK 900 BOUND REMARK 900 RELATED ID: 2HMU RELATED DB: PDB REMARK 900 DIAMOND-SHAPED OCTAMERIC RING STRUCTURE OF AN RCK DOMAIN WITH ATP REMARK 900 BOUND REMARK 900 RELATED ID: 2HMV RELATED DB: PDB REMARK 900 DIAMOND-SHAPED OCTAMERIC RING STRUCTURE OF AN RCK DOMAIN WITH ADP REMARK 900 BOUND REMARK 900 RELATED ID: 2HMW RELATED DB: PDB REMARK 900 SQUARE-SHAPED OCTAMERIC RING STRUCTURE OF AN RCK DOMAIN WITH ATP REMARK 900 BOUND REMARK 900 RELATED ID: 4J90 RELATED DB: PDB DBREF 4J91 A 1 222 UNP O32080 KTRA_BACSU 1 222 DBREF 4J91 B 1 222 UNP O32080 KTRA_BACSU 1 222 DBREF 4J91 C 1 222 UNP O32080 KTRA_BACSU 1 222 DBREF 4J91 D 1 222 UNP O32080 KTRA_BACSU 1 222 SEQRES 1 A 222 MET GLY ARG ILE LYS ASN LYS GLN PHE ALA VAL ILE GLY SEQRES 2 A 222 LEU GLY ARG PHE GLY GLY SER ILE CYS LYS GLU LEU HIS SEQRES 3 A 222 ARG MET GLY HIS GLU VAL LEU ALA VAL ASP ILE ASN GLU SEQRES 4 A 222 GLU LYS VAL ASN ALA TYR ALA SER TYR ALA THR HIS ALA SEQRES 5 A 222 VAL ILE ALA ASN ALA THR GLU GLU ASN GLU LEU LEU SER SEQRES 6 A 222 LEU GLY ILE ARG ASN PHE GLU TYR VAL ILE VAL ALA ILE SEQRES 7 A 222 GLY ALA ASN ILE GLN ALA SER THR LEU THR THR LEU LEU SEQRES 8 A 222 LEU LYS GLU LEU ASP ILE PRO ASN ILE TRP VAL LYS ALA SEQRES 9 A 222 GLN ASN TYR TYR HIS HIS LYS VAL LEU GLU LYS ILE GLY SEQRES 10 A 222 ALA ASP ARG ILE ILE HIS PRO GLU LYS ASP MET GLY VAL SEQRES 11 A 222 LYS ILE ALA GLN SER LEU SER ASP GLU ASN VAL LEU ASN SEQRES 12 A 222 TYR ILE ASP LEU SER ASP GLU TYR SER ILE VAL GLU LEU SEQRES 13 A 222 LEU ALA THR ARG LYS LEU ASP SER LYS SER ILE ILE ASP SEQRES 14 A 222 LEU ASN VAL ARG ALA LYS TYR GLY CYS THR ILE LEU ALA SEQRES 15 A 222 ILE LYS HIS HIS GLY ASP ILE CYS LEU SER PRO ALA PRO SEQRES 16 A 222 GLU ASP ILE ILE ARG GLU GLN ASP CYS LEU VAL ILE MET SEQRES 17 A 222 GLY HIS LYS LYS ASP ILE LYS ARG PHE GLU ASN GLU GLY SEQRES 18 A 222 MET SEQRES 1 B 222 MET GLY ARG ILE LYS ASN LYS GLN PHE ALA VAL ILE GLY SEQRES 2 B 222 LEU GLY ARG PHE GLY GLY SER ILE CYS LYS GLU LEU HIS SEQRES 3 B 222 ARG MET GLY HIS GLU VAL LEU ALA VAL ASP ILE ASN GLU SEQRES 4 B 222 GLU LYS VAL ASN ALA TYR ALA SER TYR ALA THR HIS ALA SEQRES 5 B 222 VAL ILE ALA ASN ALA THR GLU GLU ASN GLU LEU LEU SER SEQRES 6 B 222 LEU GLY ILE ARG ASN PHE GLU TYR VAL ILE VAL ALA ILE SEQRES 7 B 222 GLY ALA ASN ILE GLN ALA SER THR LEU THR THR LEU LEU SEQRES 8 B 222 LEU LYS GLU LEU ASP ILE PRO ASN ILE TRP VAL LYS ALA SEQRES 9 B 222 GLN ASN TYR TYR HIS HIS LYS VAL LEU GLU LYS ILE GLY SEQRES 10 B 222 ALA ASP ARG ILE ILE HIS PRO GLU LYS ASP MET GLY VAL SEQRES 11 B 222 LYS ILE ALA GLN SER LEU SER ASP GLU ASN VAL LEU ASN SEQRES 12 B 222 TYR ILE ASP LEU SER ASP GLU TYR SER ILE VAL GLU LEU SEQRES 13 B 222 LEU ALA THR ARG LYS LEU ASP SER LYS SER ILE ILE ASP SEQRES 14 B 222 LEU ASN VAL ARG ALA LYS TYR GLY CYS THR ILE LEU ALA SEQRES 15 B 222 ILE LYS HIS HIS GLY ASP ILE CYS LEU SER PRO ALA PRO SEQRES 16 B 222 GLU ASP ILE ILE ARG GLU GLN ASP CYS LEU VAL ILE MET SEQRES 17 B 222 GLY HIS LYS LYS ASP ILE LYS ARG PHE GLU ASN GLU GLY SEQRES 18 B 222 MET SEQRES 1 C 222 MET GLY ARG ILE LYS ASN LYS GLN PHE ALA VAL ILE GLY SEQRES 2 C 222 LEU GLY ARG PHE GLY GLY SER ILE CYS LYS GLU LEU HIS SEQRES 3 C 222 ARG MET GLY HIS GLU VAL LEU ALA VAL ASP ILE ASN GLU SEQRES 4 C 222 GLU LYS VAL ASN ALA TYR ALA SER TYR ALA THR HIS ALA SEQRES 5 C 222 VAL ILE ALA ASN ALA THR GLU GLU ASN GLU LEU LEU SER SEQRES 6 C 222 LEU GLY ILE ARG ASN PHE GLU TYR VAL ILE VAL ALA ILE SEQRES 7 C 222 GLY ALA ASN ILE GLN ALA SER THR LEU THR THR LEU LEU SEQRES 8 C 222 LEU LYS GLU LEU ASP ILE PRO ASN ILE TRP VAL LYS ALA SEQRES 9 C 222 GLN ASN TYR TYR HIS HIS LYS VAL LEU GLU LYS ILE GLY SEQRES 10 C 222 ALA ASP ARG ILE ILE HIS PRO GLU LYS ASP MET GLY VAL SEQRES 11 C 222 LYS ILE ALA GLN SER LEU SER ASP GLU ASN VAL LEU ASN SEQRES 12 C 222 TYR ILE ASP LEU SER ASP GLU TYR SER ILE VAL GLU LEU SEQRES 13 C 222 LEU ALA THR ARG LYS LEU ASP SER LYS SER ILE ILE ASP SEQRES 14 C 222 LEU ASN VAL ARG ALA LYS TYR GLY CYS THR ILE LEU ALA SEQRES 15 C 222 ILE LYS HIS HIS GLY ASP ILE CYS LEU SER PRO ALA PRO SEQRES 16 C 222 GLU ASP ILE ILE ARG GLU GLN ASP CYS LEU VAL ILE MET SEQRES 17 C 222 GLY HIS LYS LYS ASP ILE LYS ARG PHE GLU ASN GLU GLY SEQRES 18 C 222 MET SEQRES 1 D 222 MET GLY ARG ILE LYS ASN LYS GLN PHE ALA VAL ILE GLY SEQRES 2 D 222 LEU GLY ARG PHE GLY GLY SER ILE CYS LYS GLU LEU HIS SEQRES 3 D 222 ARG MET GLY HIS GLU VAL LEU ALA VAL ASP ILE ASN GLU SEQRES 4 D 222 GLU LYS VAL ASN ALA TYR ALA SER TYR ALA THR HIS ALA SEQRES 5 D 222 VAL ILE ALA ASN ALA THR GLU GLU ASN GLU LEU LEU SER SEQRES 6 D 222 LEU GLY ILE ARG ASN PHE GLU TYR VAL ILE VAL ALA ILE SEQRES 7 D 222 GLY ALA ASN ILE GLN ALA SER THR LEU THR THR LEU LEU SEQRES 8 D 222 LEU LYS GLU LEU ASP ILE PRO ASN ILE TRP VAL LYS ALA SEQRES 9 D 222 GLN ASN TYR TYR HIS HIS LYS VAL LEU GLU LYS ILE GLY SEQRES 10 D 222 ALA ASP ARG ILE ILE HIS PRO GLU LYS ASP MET GLY VAL SEQRES 11 D 222 LYS ILE ALA GLN SER LEU SER ASP GLU ASN VAL LEU ASN SEQRES 12 D 222 TYR ILE ASP LEU SER ASP GLU TYR SER ILE VAL GLU LEU SEQRES 13 D 222 LEU ALA THR ARG LYS LEU ASP SER LYS SER ILE ILE ASP SEQRES 14 D 222 LEU ASN VAL ARG ALA LYS TYR GLY CYS THR ILE LEU ALA SEQRES 15 D 222 ILE LYS HIS HIS GLY ASP ILE CYS LEU SER PRO ALA PRO SEQRES 16 D 222 GLU ASP ILE ILE ARG GLU GLN ASP CYS LEU VAL ILE MET SEQRES 17 D 222 GLY HIS LYS LYS ASP ILE LYS ARG PHE GLU ASN GLU GLY SEQRES 18 D 222 MET HET ADP A 601 27 HET ADP B 601 27 HET ADP C 601 27 HET ADP D 601 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 5 ADP 4(C10 H15 N5 O10 P2) HELIX 1 1 GLY A 15 GLY A 29 1 15 HELIX 2 2 ASN A 38 TYR A 45 1 8 HELIX 3 3 ALA A 46 ALA A 49 5 4 HELIX 4 4 GLU A 59 GLY A 67 1 9 HELIX 5 5 ILE A 68 PHE A 71 5 4 HELIX 6 6 ASN A 81 LEU A 95 1 15 HELIX 7 7 ASN A 106 ILE A 116 1 11 HELIX 8 8 HIS A 123 ASP A 138 1 16 HELIX 9 9 HIS A 210 MET A 222 1 13 HELIX 10 10 GLY B 15 GLY B 29 1 15 HELIX 11 11 ASN B 38 TYR B 45 1 8 HELIX 12 12 ALA B 46 ALA B 49 5 4 HELIX 13 13 GLU B 59 GLY B 67 1 9 HELIX 14 14 ILE B 68 PHE B 71 5 4 HELIX 15 15 ASN B 81 LEU B 95 1 15 HELIX 16 16 ASN B 106 ILE B 116 1 11 HELIX 17 17 HIS B 123 ASP B 138 1 16 HELIX 18 18 THR B 159 ASP B 163 5 5 HELIX 19 19 ASN B 171 TYR B 176 1 6 HELIX 20 20 LYS B 211 MET B 222 1 12 HELIX 21 21 GLY C 15 GLY C 29 1 15 HELIX 22 22 ASN C 38 TYR C 45 1 8 HELIX 23 23 ALA C 46 ALA C 49 5 4 HELIX 24 24 GLU C 59 GLY C 67 1 9 HELIX 25 25 ILE C 68 PHE C 71 5 4 HELIX 26 26 ASN C 81 LEU C 95 1 15 HELIX 27 27 ASN C 106 ILE C 116 1 11 HELIX 28 28 HIS C 123 ASP C 138 1 16 HELIX 29 29 LYS C 211 MET C 222 1 12 HELIX 30 30 GLY D 15 GLY D 29 1 15 HELIX 31 31 ASN D 38 TYR D 45 1 8 HELIX 32 32 ALA D 46 ALA D 49 5 4 HELIX 33 33 GLU D 59 GLY D 67 1 9 HELIX 34 34 ILE D 68 PHE D 71 5 4 HELIX 35 35 ASN D 81 LEU D 95 1 15 HELIX 36 36 ASN D 106 ILE D 116 1 11 HELIX 37 37 HIS D 123 ASP D 138 1 16 HELIX 38 38 LYS D 211 MET D 222 1 12 SHEET 1 A 6 HIS A 51 ILE A 54 0 SHEET 2 A 6 VAL A 32 ASP A 36 1 N ALA A 34 O HIS A 51 SHEET 3 A 6 PHE A 9 VAL A 11 1 N VAL A 11 O VAL A 35 SHEET 4 A 6 TYR A 73 VAL A 76 1 O ILE A 75 N ALA A 10 SHEET 5 A 6 ASN A 99 LYS A 103 1 O TRP A 101 N VAL A 76 SHEET 6 A 6 ARG A 120 ILE A 122 1 O ILE A 122 N VAL A 102 SHEET 1 B 5 VAL A 141 ILE A 145 0 SHEET 2 B 5 ILE A 153 LEU A 156 -1 O GLU A 155 N ASN A 143 SHEET 3 B 5 LEU A 205 MET A 208 -1 O LEU A 205 N LEU A 156 SHEET 4 B 5 THR A 179 HIS A 185 -1 N LEU A 181 O VAL A 206 SHEET 5 B 5 ASP A 188 CYS A 190 -1 O CYS A 190 N ILE A 183 SHEET 1 C 6 HIS B 51 ILE B 54 0 SHEET 2 C 6 VAL B 32 ASP B 36 1 N ALA B 34 O HIS B 51 SHEET 3 C 6 PHE B 9 VAL B 11 1 N VAL B 11 O VAL B 35 SHEET 4 C 6 TYR B 73 VAL B 76 1 O ILE B 75 N ALA B 10 SHEET 5 C 6 ASN B 99 LYS B 103 1 O TRP B 101 N VAL B 76 SHEET 6 C 6 ARG B 120 ILE B 122 1 O ILE B 122 N VAL B 102 SHEET 1 D 5 VAL B 141 ASP B 146 0 SHEET 2 D 5 TYR B 151 LEU B 157 -1 O GLU B 155 N ASN B 143 SHEET 3 D 5 CYS B 204 HIS B 210 -1 O LEU B 205 N LEU B 156 SHEET 4 D 5 THR B 179 HIS B 185 -1 N LEU B 181 O VAL B 206 SHEET 5 D 5 ASP B 188 CYS B 190 -1 O CYS B 190 N ILE B 183 SHEET 1 E 6 HIS C 51 ILE C 54 0 SHEET 2 E 6 VAL C 32 ASP C 36 1 N ALA C 34 O HIS C 51 SHEET 3 E 6 PHE C 9 VAL C 11 1 N VAL C 11 O VAL C 35 SHEET 4 E 6 TYR C 73 VAL C 76 1 O ILE C 75 N ALA C 10 SHEET 5 E 6 ASN C 99 LYS C 103 1 O TRP C 101 N VAL C 76 SHEET 6 E 6 ARG C 120 ILE C 122 1 O ILE C 122 N VAL C 102 SHEET 1 F 5 VAL C 141 ASP C 146 0 SHEET 2 F 5 TYR C 151 LEU C 156 -1 O GLU C 155 N ASN C 143 SHEET 3 F 5 LEU C 205 HIS C 210 -1 O LEU C 205 N LEU C 156 SHEET 4 F 5 THR C 179 HIS C 185 -1 N THR C 179 O MET C 208 SHEET 5 F 5 ASP C 188 CYS C 190 -1 O CYS C 190 N ILE C 183 SHEET 1 G 6 HIS D 51 ILE D 54 0 SHEET 2 G 6 VAL D 32 ASP D 36 1 N ALA D 34 O HIS D 51 SHEET 3 G 6 PHE D 9 VAL D 11 1 N VAL D 11 O VAL D 35 SHEET 4 G 6 TYR D 73 VAL D 76 1 O ILE D 75 N ALA D 10 SHEET 5 G 6 ASN D 99 LYS D 103 1 O TRP D 101 N VAL D 76 SHEET 6 G 6 ARG D 120 ILE D 122 1 O ILE D 122 N VAL D 102 SHEET 1 H 5 VAL D 141 ASP D 146 0 SHEET 2 H 5 TYR D 151 LEU D 157 -1 O GLU D 155 N ASN D 143 SHEET 3 H 5 CYS D 204 HIS D 210 -1 O LEU D 205 N LEU D 156 SHEET 4 H 5 THR D 179 HIS D 185 -1 N LEU D 181 O VAL D 206 SHEET 5 H 5 ASP D 188 CYS D 190 -1 O CYS D 190 N ILE D 183 SITE 1 AC1 17 GLY A 13 LEU A 14 GLY A 15 ARG A 16 SITE 2 AC1 17 PHE A 17 ASP A 36 ILE A 37 ASN A 38 SITE 3 AC1 17 LYS A 41 ALA A 55 ASN A 56 ALA A 57 SITE 4 AC1 17 ALA A 77 ILE A 78 GLY A 79 LYS A 103 SITE 5 AC1 17 GLU B 125 SITE 1 AC2 16 GLU A 125 ILE B 12 LEU B 14 GLY B 15 SITE 2 AC2 16 ARG B 16 PHE B 17 ASP B 36 ILE B 37 SITE 3 AC2 16 LYS B 41 ALA B 55 ASN B 56 ALA B 57 SITE 4 AC2 16 THR B 58 ILE B 78 GLY B 79 LYS B 103 SITE 1 AC3 14 LEU C 14 GLY C 15 ARG C 16 PHE C 17 SITE 2 AC3 14 ASP C 36 ILE C 37 ASN C 38 LYS C 41 SITE 3 AC3 14 ALA C 55 ASN C 56 ALA C 57 THR C 58 SITE 4 AC3 14 ILE C 78 LYS C 103 SITE 1 AC4 13 LEU D 14 GLY D 15 ARG D 16 PHE D 17 SITE 2 AC4 13 ASP D 36 ILE D 37 LYS D 41 ALA D 55 SITE 3 AC4 13 ASN D 56 ALA D 57 THR D 58 ILE D 78 SITE 4 AC4 13 LYS D 103 CRYST1 147.932 84.630 113.675 90.00 128.37 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006760 0.000000 0.005352 0.00000 SCALE2 0.000000 0.011816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011220 0.00000