HEADER HYDROLASE 15-FEB-13 4J94 TITLE CRYSTAL STRUCTURE OF MYCP1 FROM THE ESX-1 TYPE VII SECRETION SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ANCHORED MYCOSIN MYCP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 24-407; COMPND 5 SYNONYM: PEPTIDASE S8 AND S53, SUBTILISIN, KEXIN, SEDOLISIN; COMPND 6 EC: 3.4.21.62; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_0083, MSMEI_0081; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUBTILISIN-LIKE, PROTEASE, SECRETION SYSTEM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SOLOMONSON,G.A.WASNEY,N.WATANABE,R.J.GRUNINGER,G.PREHNA, AUTHOR 2 N.C.J.STRYNADKA REVDAT 3 03-JUL-13 4J94 1 JRNL REVDAT 2 19-JUN-13 4J94 1 JRNL REVDAT 1 01-MAY-13 4J94 0 JRNL AUTH M.SOLOMONSON,P.F.HUESGEN,G.A.WASNEY,N.WATANABE, JRNL AUTH 2 R.J.GRUNINGER,G.PREHNA,C.M.OVERALL,N.C.STRYNADKA JRNL TITL STRUCTURE OF THE MYCOSIN-1 PROTEASE FROM THE MYCOBACTERIAL JRNL TITL 2 ESX-1 PROTEIN TYPE VII SECRETION SYSTEM. JRNL REF J.BIOL.CHEM. V. 288 17782 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23620593 JRNL DOI 10.1074/JBC.M113.462036 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1284) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 27657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2250 - 3.9993 1.00 3225 171 0.1534 0.1797 REMARK 3 2 3.9993 - 3.1749 0.78 2429 126 0.1451 0.1890 REMARK 3 3 3.1749 - 2.7737 1.00 3059 161 0.1556 0.1659 REMARK 3 4 2.7737 - 2.5202 0.84 2556 136 0.1524 0.1860 REMARK 3 5 2.5202 - 2.3396 1.00 3021 158 0.1522 0.1829 REMARK 3 6 2.3396 - 2.2016 0.77 2325 125 0.1484 0.2059 REMARK 3 7 2.2016 - 2.0914 1.00 2979 156 0.1475 0.1854 REMARK 3 8 2.0914 - 2.0004 0.78 2373 126 0.1516 0.2231 REMARK 3 9 2.0004 - 1.9234 0.73 2126 113 0.1653 0.2134 REMARK 3 10 1.9234 - 1.8570 0.82 2175 117 0.2264 0.2722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2812 REMARK 3 ANGLE : 1.106 3872 REMARK 3 CHIRALITY : 0.073 440 REMARK 3 PLANARITY : 0.005 533 REMARK 3 DIHEDRAL : 10.377 1010 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 24 through 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7547 1.4375 -5.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1546 REMARK 3 T33: 0.1366 T12: -0.0223 REMARK 3 T13: 0.0222 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.0011 L22: 1.0929 REMARK 3 L33: 1.4171 L12: -0.6641 REMARK 3 L13: -0.4981 L23: 0.8253 REMARK 3 S TENSOR REMARK 3 S11: 0.0700 S12: 0.0009 S13: 0.0013 REMARK 3 S21: -0.1019 S22: 0.0623 S23: -0.1136 REMARK 3 S31: -0.0190 S32: 0.1651 S33: -0.1647 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 53 through 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4172 3.8131 -15.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.1139 REMARK 3 T33: 0.1246 T12: 0.0088 REMARK 3 T13: -0.0094 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.3679 L22: 1.1172 REMARK 3 L33: 0.9176 L12: -0.2008 REMARK 3 L13: 0.1296 L23: 0.2978 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.1068 S13: 0.1483 REMARK 3 S21: -0.1250 S22: -0.1311 S23: 0.1992 REMARK 3 S31: -0.0841 S32: -0.1588 S33: 0.0706 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 87 through 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4280 0.7999 -3.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.0728 REMARK 3 T33: 0.0698 T12: -0.0096 REMARK 3 T13: 0.0130 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.8903 L22: 0.4177 REMARK 3 L33: 0.9266 L12: 0.3524 REMARK 3 L13: 0.5428 L23: 0.1135 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.1004 S13: 0.0377 REMARK 3 S21: 0.0286 S22: -0.0316 S23: 0.0350 REMARK 3 S31: -0.0228 S32: -0.0450 S33: 0.0051 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 163 through 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5317 3.5057 -6.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.0709 T22: 0.0928 REMARK 3 T33: 0.0973 T12: 0.0010 REMARK 3 T13: 0.0110 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.4599 L22: 0.9325 REMARK 3 L33: 1.0672 L12: -0.0418 REMARK 3 L13: 0.0715 L23: 0.2411 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.0256 S13: 0.2583 REMARK 3 S21: -0.0129 S22: 0.0849 S23: -0.1549 REMARK 3 S31: -0.0831 S32: 0.1555 S33: -0.0345 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 194 through 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9976 2.2916 -14.2082 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0522 REMARK 3 T33: 0.0283 T12: -0.0023 REMARK 3 T13: -0.0018 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 2.9958 L22: 2.9789 REMARK 3 L33: 1.3741 L12: 1.8587 REMARK 3 L13: -0.6851 L23: -1.1318 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.1008 S13: 0.1157 REMARK 3 S21: 0.0343 S22: 0.0667 S23: -0.0422 REMARK 3 S31: -0.1160 S32: 0.0259 S33: -0.0779 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 216 through 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7854 -1.8343 -15.8031 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0667 REMARK 3 T33: 0.0461 T12: -0.0045 REMARK 3 T13: -0.0154 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.2933 L22: 1.4760 REMARK 3 L33: 1.4237 L12: -0.3545 REMARK 3 L13: -0.0260 L23: -0.9854 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0554 S13: 0.0545 REMARK 3 S21: 0.0512 S22: 0.0050 S23: -0.0315 REMARK 3 S31: 0.0425 S32: 0.0786 S33: 0.0136 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 247 through 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0536 6.6035 -27.0808 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1684 REMARK 3 T33: 0.0911 T12: -0.0542 REMARK 3 T13: 0.0050 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.9017 L22: 1.2338 REMARK 3 L33: 0.8314 L12: 0.4787 REMARK 3 L13: 0.2516 L23: 0.1615 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: 0.5074 S13: -0.0037 REMARK 3 S21: -0.2525 S22: 0.1500 S23: -0.0289 REMARK 3 S31: -0.2014 S32: 0.1703 S33: -0.0116 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resid 294 through 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0998 1.7063 -16.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0423 REMARK 3 T33: 0.0438 T12: 0.0006 REMARK 3 T13: -0.0030 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.1557 L22: 0.4958 REMARK 3 L33: 0.8753 L12: -0.1306 REMARK 3 L13: -0.2570 L23: 0.2172 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.0022 S13: 0.0661 REMARK 3 S21: 0.0104 S22: -0.0112 S23: 0.0017 REMARK 3 S31: -0.0204 S32: -0.0087 S33: 0.0055 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resid 366 through 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2583 -5.1753 -29.9299 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.1042 REMARK 3 T33: 0.0411 T12: -0.0061 REMARK 3 T13: -0.0121 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.6172 L22: 2.0378 REMARK 3 L33: 1.2595 L12: 0.2836 REMARK 3 L13: -0.0757 L23: 0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.1119 S13: -0.0672 REMARK 3 S21: -0.1196 S22: 0.0067 S23: -0.0615 REMARK 3 S31: 0.0924 S32: 0.1228 S33: -0.0101 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.77 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.581 REMARK 200 RESOLUTION RANGE LOW (A) : 47.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20600 REMARK 200 R SYM FOR SHELL (I) : 0.20600 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE 0.18 M SODIUM REMARK 280 THIOCYANATE 26% PEG 3350, PH 6.77, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.24500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.24500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 PRO A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 VAL A 404 REMARK 465 LYS A 405 REMARK 465 GLU A 406 REMARK 465 VAL A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 24 CG1 CG2 CD1 REMARK 470 GLN A 167 CG CD OE1 NE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 PHE A 402 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 403 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 392 O HOH A 647 1.94 REMARK 500 O HOH A 821 O HOH A 856 1.95 REMARK 500 O HOH A 744 O HOH A 745 1.95 REMARK 500 O HOH A 902 O HOH A 917 2.00 REMARK 500 O HOH A 780 O HOH A 808 2.01 REMARK 500 OG1 THR A 266 O HOH A 671 2.03 REMARK 500 O HOH A 717 O HOH A 721 2.04 REMARK 500 O HOH A 756 O HOH A 757 2.04 REMARK 500 O HOH A 887 O HOH A 914 2.06 REMARK 500 O HOH A 621 O HOH A 899 2.09 REMARK 500 O HOH A 852 O HOH A 873 2.09 REMARK 500 O HOH A 869 O HOH A 876 2.11 REMARK 500 O HOH A 603 O HOH A 910 2.13 REMARK 500 O HOH A 765 O HOH A 809 2.13 REMARK 500 O HOH A 719 O HOH A 731 2.14 REMARK 500 NE2 GLN A 176 O HOH A 665 2.15 REMARK 500 O HOH A 708 O HOH A 718 2.16 REMARK 500 ND2 ASN A 291 O HOH A 794 2.18 REMARK 500 O HOH A 728 O HOH A 762 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 55 -159.61 -145.52 REMARK 500 ASP A 92 -144.14 -160.63 REMARK 500 HIS A 123 -61.27 -149.73 REMARK 500 ASP A 243 -18.15 75.75 REMARK 500 SER A 310 -156.43 -150.40 REMARK 500 ASN A 319 25.09 -149.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 830 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 5.18 ANGSTROMS DBREF 4J94 A 24 407 UNP A0QNL1 A0QNL1_MYCS2 24 407 SEQADV 4J94 MSE A 0 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 GLY A 1 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 SER A 2 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 SER A 3 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 4 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 5 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 6 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 7 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 8 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 9 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 10 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 11 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 12 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 13 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 SER A 14 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 SER A 15 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 GLY A 16 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 LEU A 17 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 VAL A 18 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 PRO A 19 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 ARG A 20 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 GLY A 21 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 SER A 22 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 HIS A 23 UNP A0QNL1 EXPRESSION TAG SEQADV 4J94 ALA A 251 UNP A0QNL1 ASP 251 CONFLICT SEQADV 4J94 ALA A 274 UNP A0QNL1 ASP 274 CONFLICT SEQRES 1 A 408 MSE GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 A 408 HIS SER SER GLY LEU VAL PRO ARG GLY SER HIS ILE ASP SEQRES 3 A 408 PRO PRO VAL ILE ASP ALA GLY ALA VAL PRO PRO ASP GLU SEQRES 4 A 408 THR GLY PRO ASP GLN PRO THR GLU GLN ARG LYS ILE CYS SEQRES 5 A 408 ALA THR PRO THR VAL MSE PRO ASN SER ASN PHE ALA ASP SEQRES 6 A 408 ARG PRO TRP ALA ASN ASP TYR LEU ARG ILE GLN GLU ALA SEQRES 7 A 408 GLN LYS PHE ALA THR GLY ALA GLY VAL THR VAL ALA VAL SEQRES 8 A 408 ILE ASP THR GLY VAL ASN GLY SER PRO ARG VAL PRO ALA SEQRES 9 A 408 GLU PRO GLY GLY ASP PHE VAL ASP ALA ALA GLY ASN GLY SEQRES 10 A 408 MSE SER ASP CYS ASP ALA HIS GLY THR MSE THR ALA ALA SEQRES 11 A 408 ILE ILE GLY GLY ARG PRO SER PRO THR ASP GLY PHE VAL SEQRES 12 A 408 GLY MSE ALA PRO ASP VAL ARG LEU LEU SER LEU ARG GLN SEQRES 13 A 408 THR SER VAL ALA PHE GLN PRO LYS GLY ALA ARG GLN ASP SEQRES 14 A 408 PRO ASN ASP PRO ASN THR THR GLN THR ALA GLY SER ILE SEQRES 15 A 408 ARG SER LEU ALA ARG SER VAL VAL HIS ALA ALA ASN LEU SEQRES 16 A 408 GLY ALA GLN VAL ILE ASN ILE SER GLU ALA ALA CYS TYR SEQRES 17 A 408 LYS VAL THR ARG ARG ILE ASP GLU THR SER LEU GLY ALA SEQRES 18 A 408 ALA ILE ASN TYR ALA VAL ASN VAL LYS GLY ALA VAL ILE SEQRES 19 A 408 VAL VAL ALA ALA GLY ASN THR GLY GLN ASP CYS SER GLN SEQRES 20 A 408 ASN PRO PRO PRO ALA PRO SER VAL PRO SER ASP PRO ARG SEQRES 21 A 408 GLY TRP ARG GLU VAL GLN THR ILE VAL SER PRO ALA TRP SEQRES 22 A 408 TYR ALA PRO LEU VAL LEU THR VAL GLY SER ILE GLY GLN SEQRES 23 A 408 ASN GLY GLN PRO SER ASN PHE SER MSE SER GLY PRO TRP SEQRES 24 A 408 VAL GLY ALA ALA ALA PRO GLY GLU ASN LEU THR SER LEU SEQRES 25 A 408 GLY TYR ASP GLY GLN PRO VAL ASN ALA THR PRO GLY GLU SEQRES 26 A 408 ASP GLY PRO VAL PRO LEU ASN GLY THR SER PHE SER ALA SEQRES 27 A 408 ALA TYR VAL SER GLY LEU ALA ALA LEU VAL LYS GLN ARG SEQRES 28 A 408 PHE PRO ASP LEU THR PRO ALA GLN ILE ILE ASN ARG ILE SEQRES 29 A 408 THR ALA THR ALA ARG HIS PRO GLY GLY GLY VAL ASP ASN SEQRES 30 A 408 TYR VAL GLY ALA GLY VAL ILE ASP PRO VAL ALA ALA LEU SEQRES 31 A 408 THR TRP GLU ILE PRO ASP GLY PRO GLU LYS ALA PRO PHE SEQRES 32 A 408 ARG VAL LYS GLU VAL MODRES 4J94 MSE A 57 MET SELENOMETHIONINE MODRES 4J94 MSE A 117 MET SELENOMETHIONINE MODRES 4J94 MSE A 126 MET SELENOMETHIONINE MODRES 4J94 MSE A 144 MET SELENOMETHIONINE MODRES 4J94 MSE A 294 MET SELENOMETHIONINE HET MSE A 57 8 HET MSE A 117 8 HET MSE A 126 8 HET MSE A 144 8 HET MSE A 294 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *421(H2 O) HELIX 1 1 PRO A 66 LEU A 72 1 7 HELIX 2 2 ARG A 73 GLN A 78 1 6 HELIX 3 3 HIS A 123 GLY A 133 1 11 HELIX 4 4 ASP A 171 THR A 174 5 4 HELIX 5 5 THR A 175 LEU A 194 1 20 HELIX 6 6 GLU A 215 VAL A 228 1 14 HELIX 7 7 GLY A 260 VAL A 264 5 5 HELIX 8 8 PRO A 270 ALA A 274 5 5 HELIX 9 9 GLY A 332 PHE A 351 1 20 HELIX 10 10 THR A 355 THR A 366 1 12 HELIX 11 11 ASP A 384 TRP A 391 1 8 SHEET 1 A 2 THR A 45 GLN A 47 0 SHEET 2 A 2 PHE A 160 PRO A 162 -1 O GLN A 161 N GLU A 46 SHEET 1 B 7 GLU A 104 ASP A 108 0 SHEET 2 B 7 ARG A 149 ARG A 154 1 O SER A 152 N GLU A 104 SHEET 3 B 7 THR A 87 ASP A 92 1 N VAL A 90 O LEU A 151 SHEET 4 B 7 VAL A 198 ILE A 201 1 O ASN A 200 N ALA A 89 SHEET 5 B 7 VAL A 232 ALA A 236 1 O VAL A 232 N ILE A 199 SHEET 6 B 7 LEU A 278 ILE A 283 1 O VAL A 280 N VAL A 235 SHEET 7 B 7 ALA A 301 PRO A 304 1 O ALA A 301 N GLY A 281 SHEET 1 C 2 ALA A 205 LYS A 208 0 SHEET 2 C 2 THR A 266 SER A 269 -1 O SER A 269 N ALA A 205 SHEET 1 D 2 SER A 310 LEU A 311 0 SHEET 2 D 2 PRO A 317 VAL A 318 -1 O VAL A 318 N SER A 310 SHEET 1 E 2 ALA A 320 THR A 321 0 SHEET 2 E 2 VAL A 328 PRO A 329 -1 O VAL A 328 N THR A 321 SSBOND 1 CYS A 51 CYS A 120 1555 1555 2.04 SSBOND 2 CYS A 206 CYS A 244 1555 1555 2.05 LINK C VAL A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N PRO A 58 1555 1555 1.34 LINK C GLY A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N SER A 118 1555 1555 1.33 LINK C THR A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N THR A 127 1555 1555 1.33 LINK C GLY A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ALA A 145 1555 1555 1.33 LINK C SER A 293 N MSE A 294 1555 1555 1.33 LINK C MSE A 294 N SER A 295 1555 1555 1.33 CISPEP 1 SER A 269 PRO A 270 0 8.44 CISPEP 2 ALA A 274 PRO A 275 0 3.88 CRYST1 56.490 77.290 84.930 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017702 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012938 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011774 0.00000