HEADER TRANSFERASE/DNA 16-FEB-13 4J9O TITLE HUMAN DNA POLYMERASE ETA-DNA TERNARY COMPLEX: PRIMER EXTENSION AFTER A TITLE 2 T:G MISPAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN, UNP RESIDUES 1-432; COMPND 5 SYNONYM: RAD30 HOMOLOG A, XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*T*AP*CP*TP*TP*AP*TP*GP*AP*CP*GP*T)-3'); COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*T*AP*CP*GP*TP*CP*AP*TP*G)-3'); COMPND 14 CHAIN: P; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLH, RAD30, RAD30A, XPV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS IMMUNOGLOBULIN, A TO G TRANSITION, MISINCORPORATION, WOBBLE BASE KEYWDS 2 PAIR, DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,M.GREGORY,C.BIERTUMPFEL,Y.HUA,F.HANAOKA,W.YANG REVDAT 3 20-SEP-23 4J9O 1 REMARK SEQADV LINK REVDAT 2 28-AUG-13 4J9O 1 JRNL REVDAT 1 01-MAY-13 4J9O 0 JRNL AUTH Y.ZHAO,M.T.GREGORY,C.BIERTUMPFEL,Y.J.HUA,F.HANAOKA,W.YANG JRNL TITL MECHANISM OF SOMATIC HYPERMUTATION AT THE WA MOTIF BY HUMAN JRNL TITL 2 DNA POLYMERASE ETA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 8146 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23630267 JRNL DOI 10.1073/PNAS.1303126110 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 13641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.510 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.0920 - 4.9596 0.90 1719 149 0.2127 0.2172 REMARK 3 2 4.9596 - 3.9405 0.96 1819 131 0.1768 0.1897 REMARK 3 3 3.9405 - 3.4435 0.97 1806 170 0.1832 0.2184 REMARK 3 4 3.4435 - 3.1292 0.98 1829 139 0.2098 0.2267 REMARK 3 5 3.1292 - 2.9052 0.98 1852 145 0.2391 0.3189 REMARK 3 6 2.9052 - 2.7341 0.97 1821 134 0.2599 0.2966 REMARK 3 7 2.7341 - 2.5972 0.95 1770 157 0.2541 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3808 REMARK 3 ANGLE : 1.102 5222 REMARK 3 CHIRALITY : 0.065 586 REMARK 3 PLANARITY : 0.007 603 REMARK 3 DIHEDRAL : 22.062 1490 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.597 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.74 REMARK 200 R MERGE FOR SHELL (I) : 0.77200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3MR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2K-MME, KCL, MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.19333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.38667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.79000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.98333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.59667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 155 REMARK 465 THR A 156 REMARK 465 ALA A 157 REMARK 465 GLU A 158 REMARK 465 GLU A 159 REMARK 465 GLN A 179 REMARK 465 ILE A 180 REMARK 465 ASP A 181 REMARK 465 GLY A 410 REMARK 465 ILE A 411 REMARK 465 GLN A 412 REMARK 465 THR A 413 REMARK 465 DT T 1 REMARK 465 DT P 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA T 2 P OP1 OP2 REMARK 470 DA P 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 16 53.47 32.16 REMARK 500 TYR A 39 70.00 63.15 REMARK 500 SER A 257 -0.62 81.25 REMARK 500 PHE A 325 72.13 -119.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 MET A 14 O 84.1 REMARK 620 3 ASP A 115 OD2 102.5 95.1 REMARK 620 4 DZ4 A 503 O1B 160.3 88.0 96.1 REMARK 620 5 DZ4 A 503 O1A 102.7 172.7 86.2 84.7 REMARK 620 6 DZ4 A 503 O1G 77.5 100.1 164.8 86.2 79.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD2 REMARK 620 2 ASP A 115 OD1 98.9 REMARK 620 3 GLU A 116 OE1 77.2 87.2 REMARK 620 4 DZ4 A 503 O1A 101.7 100.1 172.7 REMARK 620 5 DG P 9 O3' 154.2 83.4 77.3 103.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DZ4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MR2 RELATED DB: PDB REMARK 900 RELATED ID: 4DL2 RELATED DB: PDB REMARK 900 RELATED ID: 4DL3 RELATED DB: PDB REMARK 900 RELATED ID: 4J9K RELATED DB: PDB REMARK 900 RELATED ID: 4J9L RELATED DB: PDB REMARK 900 RELATED ID: 4J9M RELATED DB: PDB REMARK 900 RELATED ID: 4J9N RELATED DB: PDB REMARK 900 RELATED ID: 4J9P RELATED DB: PDB REMARK 900 RELATED ID: 4J9Q RELATED DB: PDB REMARK 900 RELATED ID: 4J9R RELATED DB: PDB REMARK 900 RELATED ID: 4J9S RELATED DB: PDB DBREF 4J9O A 1 432 UNP Q9Y253 POLH_HUMAN 1 432 DBREF 4J9O T 1 12 PDB 4J9O 4J9O 1 12 DBREF 4J9O P 1 9 PDB 4J9O 4J9O 1 9 SEQADV 4J9O GLY A -2 UNP Q9Y253 EXPRESSION TAG SEQADV 4J9O PRO A -1 UNP Q9Y253 EXPRESSION TAG SEQADV 4J9O HIS A 0 UNP Q9Y253 EXPRESSION TAG SEQRES 1 A 435 GLY PRO HIS MET ALA THR GLY GLN ASP ARG VAL VAL ALA SEQRES 2 A 435 LEU VAL ASP MET ASP CYS PHE PHE VAL GLN VAL GLU GLN SEQRES 3 A 435 ARG GLN ASN PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL SEQRES 4 A 435 VAL GLN TYR LYS SER TRP LYS GLY GLY GLY ILE ILE ALA SEQRES 5 A 435 VAL SER TYR GLU ALA ARG ALA PHE GLY VAL THR ARG SER SEQRES 6 A 435 MET TRP ALA ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU SEQRES 7 A 435 LEU LEU ALA GLN VAL ARG GLU SER ARG GLY LYS ALA ASN SEQRES 8 A 435 LEU THR LYS TYR ARG GLU ALA SER VAL GLU VAL MET GLU SEQRES 9 A 435 ILE MET SER ARG PHE ALA VAL ILE GLU ARG ALA SER ILE SEQRES 10 A 435 ASP GLU ALA TYR VAL ASP LEU THR SER ALA VAL GLN GLU SEQRES 11 A 435 ARG LEU GLN LYS LEU GLN GLY GLN PRO ILE SER ALA ASP SEQRES 12 A 435 LEU LEU PRO SER THR TYR ILE GLU GLY LEU PRO GLN GLY SEQRES 13 A 435 PRO THR THR ALA GLU GLU THR VAL GLN LYS GLU GLY MET SEQRES 14 A 435 ARG LYS GLN GLY LEU PHE GLN TRP LEU ASP SER LEU GLN SEQRES 15 A 435 ILE ASP ASN LEU THR SER PRO ASP LEU GLN LEU THR VAL SEQRES 16 A 435 GLY ALA VAL ILE VAL GLU GLU MET ARG ALA ALA ILE GLU SEQRES 17 A 435 ARG GLU THR GLY PHE GLN CYS SER ALA GLY ILE SER HIS SEQRES 18 A 435 ASN LYS VAL LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS SEQRES 19 A 435 PRO ASN ARG GLN THR LEU VAL SER HIS GLY SER VAL PRO SEQRES 20 A 435 GLN LEU PHE SER GLN MET PRO ILE ARG LYS ILE ARG SER SEQRES 21 A 435 LEU GLY GLY LYS LEU GLY ALA SER VAL ILE GLU ILE LEU SEQRES 22 A 435 GLY ILE GLU TYR MET GLY GLU LEU THR GLN PHE THR GLU SEQRES 23 A 435 SER GLN LEU GLN SER HIS PHE GLY GLU LYS ASN GLY SER SEQRES 24 A 435 TRP LEU TYR ALA MET CYS ARG GLY ILE GLU HIS ASP PRO SEQRES 25 A 435 VAL LYS PRO ARG GLN LEU PRO LYS THR ILE GLY CYS SER SEQRES 26 A 435 LYS ASN PHE PRO GLY LYS THR ALA LEU ALA THR ARG GLU SEQRES 27 A 435 GLN VAL GLN TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU SEQRES 28 A 435 GLU GLU ARG LEU THR LYS ASP ARG ASN ASP ASN ASP ARG SEQRES 29 A 435 VAL ALA THR GLN LEU VAL VAL SER ILE ARG VAL GLN GLY SEQRES 30 A 435 ASP LYS ARG LEU SER SER LEU ARG ARG CYS CYS ALA LEU SEQRES 31 A 435 THR ARG TYR ASP ALA HIS LYS MET SER HIS ASP ALA PHE SEQRES 32 A 435 THR VAL ILE LYS ASN CYS ASN THR SER GLY ILE GLN THR SEQRES 33 A 435 GLU TRP SER PRO PRO LEU THR MET LEU PHE LEU CYS ALA SEQRES 34 A 435 THR LYS PHE SER ALA SER SEQRES 1 T 12 DT DA DC DT DT DA DT DG DA DC DG DT SEQRES 1 P 9 DT DA DC DG DT DC DA DT DG HET MG A 501 1 HET MG A 502 1 HET DZ4 A 503 30 HET GOL A 504 6 HET EDO A 505 4 HETNAM MG MAGNESIUM ION HETNAM DZ4 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 DZ4 PHOSPHORYL]AMINO}PHOSPHORYL]ADENOSINE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 MG 2(MG 2+) FORMUL 6 DZ4 C10 H17 N6 O11 P3 FORMUL 7 GOL C3 H8 O3 FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *98(H2 O) HELIX 1 1 CYS A 16 ASN A 26 1 11 HELIX 2 2 PRO A 27 ARG A 30 5 4 HELIX 3 3 SER A 51 ALA A 56 1 6 HELIX 4 4 TRP A 64 CYS A 72 1 9 HELIX 5 5 LEU A 89 ALA A 107 1 19 HELIX 6 6 LEU A 121 LEU A 132 1 12 HELIX 7 7 SER A 138 LEU A 142 5 5 HELIX 8 8 GLN A 162 LEU A 178 1 17 HELIX 9 9 THR A 184 GLY A 209 1 26 HELIX 10 10 ASN A 219 ASN A 230 1 12 HELIX 11 11 SER A 242 GLN A 249 1 8 HELIX 12 12 PRO A 251 ILE A 255 5 5 HELIX 13 13 GLY A 260 GLY A 271 1 12 HELIX 14 14 TYR A 274 PHE A 281 5 8 HELIX 15 15 THR A 282 GLY A 291 1 10 HELIX 16 16 GLY A 291 CYS A 302 1 12 HELIX 17 17 PRO A 326 ALA A 330 5 5 HELIX 18 18 THR A 333 ASP A 360 1 28 HELIX 19 19 ASP A 391 LYS A 404 1 14 HELIX 20 20 ASN A 405 ASN A 407 5 3 SHEET 1 A 6 VAL A 108 SER A 113 0 SHEET 2 A 6 GLU A 116 ASP A 120 -1 O TYR A 118 N GLU A 110 SHEET 3 A 6 VAL A 9 MET A 14 -1 N ALA A 10 O VAL A 119 SHEET 4 A 6 CYS A 212 SER A 217 -1 O SER A 217 N VAL A 9 SHEET 5 A 6 GLN A 235 LEU A 237 1 O THR A 236 N ILE A 216 SHEET 6 A 6 THR A 145 ILE A 147 1 N TYR A 146 O LEU A 237 SHEET 1 B 3 GLY A 46 VAL A 50 0 SHEET 2 B 3 CYS A 34 GLN A 38 -1 N VAL A 36 O ALA A 49 SHEET 3 B 3 LEU A 76 GLN A 79 1 O ALA A 78 N VAL A 37 SHEET 1 C 2 ARG A 81 SER A 83 0 SHEET 2 C 2 LYS A 86 ASN A 88 -1 O LYS A 86 N SER A 83 SHEET 1 D 4 ILE A 319 ASN A 324 0 SHEET 2 D 4 LEU A 419 ALA A 431 -1 O ALA A 426 N ILE A 319 SHEET 3 D 4 ARG A 361 VAL A 372 -1 N VAL A 367 O CYS A 425 SHEET 4 D 4 LEU A 381 ALA A 386 -1 O ARG A 383 N VAL A 368 LINK OD1 ASP A 13 MG MG A 501 1555 1555 2.13 LINK OD2 ASP A 13 MG MG A 502 1555 1555 2.12 LINK O MET A 14 MG MG A 501 1555 1555 2.09 LINK OD2 ASP A 115 MG MG A 501 1555 1555 2.06 LINK OD1 ASP A 115 MG MG A 502 1555 1555 2.38 LINK OE1 GLU A 116 MG MG A 502 1555 1555 2.30 LINK MG MG A 501 O1B DZ4 A 503 1555 1555 2.09 LINK MG MG A 501 O1A DZ4 A 503 1555 1555 2.34 LINK MG MG A 501 O1G DZ4 A 503 1555 1555 2.39 LINK MG MG A 502 O1A DZ4 A 503 1555 1555 2.10 LINK MG MG A 502 O3' DG P 9 1555 1555 2.61 CISPEP 1 LEU A 150 PRO A 151 0 4.04 CISPEP 2 LYS A 231 PRO A 232 0 -5.77 CISPEP 3 SER A 416 PRO A 417 0 -5.81 SITE 1 AC1 5 ASP A 13 MET A 14 ASP A 115 MG A 502 SITE 2 AC1 5 DZ4 A 503 SITE 1 AC2 6 ASP A 13 ASP A 115 GLU A 116 MG A 501 SITE 2 AC2 6 DZ4 A 503 DG P 9 SITE 1 AC3 19 ASP A 13 MET A 14 ASP A 15 CYS A 16 SITE 2 AC3 19 PHE A 17 PHE A 18 ILE A 48 ALA A 49 SITE 3 AC3 19 TYR A 52 ARG A 55 ARG A 61 ASP A 115 SITE 4 AC3 19 LYS A 231 MG A 501 MG A 502 HOH A 618 SITE 5 AC3 19 HOH A 669 DG P 9 DT T 4 SITE 1 AC4 1 ARG A 303 SITE 1 AC5 6 ARG A 24 GLN A 25 PRO A 244 PHE A 247 SITE 2 AC5 6 SER A 248 GLY A 276 CRYST1 99.490 99.490 81.580 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010051 0.005803 0.000000 0.00000 SCALE2 0.000000 0.011606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012258 0.00000 TER 3285 SER A 432 TER 3508 DT T 12 TER 3670 DG P 9 HETATM 3671 MG MG A 501 -19.492 39.499 4.948 1.00 28.43 MG HETATM 3672 MG MG A 502 -22.491 40.171 3.566 1.00 29.51 MG HETATM 3673 N1 DZ4 A 503 -24.301 50.173 6.514 1.00 41.01 N HETATM 3674 C2 DZ4 A 503 -23.168 50.450 5.863 1.00 42.50 C HETATM 3675 N3 DZ4 A 503 -22.238 49.600 5.416 1.00 39.58 N HETATM 3676 C4 DZ4 A 503 -22.554 48.323 5.699 1.00 37.94 C HETATM 3677 C5 DZ4 A 503 -23.689 47.894 6.360 1.00 40.77 C HETATM 3678 C6 DZ4 A 503 -24.598 48.886 6.784 1.00 42.86 C HETATM 3679 N6 DZ4 A 503 -25.730 48.607 7.439 1.00 46.76 N HETATM 3680 N7 DZ4 A 503 -23.690 46.512 6.475 1.00 41.15 N HETATM 3681 C8 DZ4 A 503 -22.579 46.131 5.888 1.00 37.59 C HETATM 3682 N9 DZ4 A 503 -21.840 47.174 5.395 1.00 37.65 N HETATM 3683 PA DZ4 A 503 -21.735 42.023 5.909 1.00 31.29 P HETATM 3684 PB DZ4 A 503 -19.062 41.644 7.169 1.00 34.66 P HETATM 3685 PG DZ4 A 503 -19.306 39.151 8.358 1.00 28.94 P HETATM 3686 C1' DZ4 A 503 -20.557 47.059 4.690 1.00 34.71 C HETATM 3687 O1A DZ4 A 503 -21.457 40.705 5.319 1.00 30.22 O HETATM 3688 O1B DZ4 A 503 -18.552 41.115 5.879 1.00 30.86 O HETATM 3689 O1G DZ4 A 503 -20.065 38.766 7.154 1.00 27.26 O HETATM 3690 C2' DZ4 A 503 -19.323 46.885 5.583 1.00 27.03 C HETATM 3691 O2A DZ4 A 503 -23.151 42.286 6.272 1.00 33.00 O HETATM 3692 O2B DZ4 A 503 -18.358 42.861 7.632 1.00 31.74 O HETATM 3693 O2G DZ4 A 503 -18.317 38.044 8.388 1.00 30.38 O HETATM 3694 C3' DZ4 A 503 -19.138 45.373 5.661 1.00 29.37 C HETATM 3695 O3' DZ4 A 503 -17.831 44.869 5.916 1.00 26.47 O HETATM 3696 N3A DZ4 A 503 -20.666 42.097 7.177 1.00 34.04 N HETATM 3697 O3B DZ4 A 503 -18.736 40.456 7.980 1.00 30.34 O HETATM 3698 O3G DZ4 A 503 -20.087 39.203 9.614 1.00 34.98 O HETATM 3699 C4' DZ4 A 503 -19.717 44.869 4.347 1.00 28.95 C HETATM 3700 O4' DZ4 A 503 -20.607 45.909 3.856 1.00 33.08 O HETATM 3701 C5' DZ4 A 503 -20.110 43.413 4.253 1.00 29.46 C HETATM 3702 O5' DZ4 A 503 -21.405 42.988 4.668 1.00 32.21 O HETATM 3703 C1 GOL A 504 -43.076 17.589 3.872 1.00 46.23 C HETATM 3704 O1 GOL A 504 -42.570 17.894 2.569 1.00 46.09 O HETATM 3705 C2 GOL A 504 -42.507 18.556 4.906 1.00 46.27 C HETATM 3706 O2 GOL A 504 -42.978 18.179 6.199 1.00 51.26 O HETATM 3707 C3 GOL A 504 -40.986 18.495 4.913 1.00 43.96 C HETATM 3708 O3 GOL A 504 -40.482 19.282 5.998 1.00 46.65 O HETATM 3709 C1 EDO A 505 -40.505 21.420 13.619 1.00 33.36 C HETATM 3710 O1 EDO A 505 -41.897 21.740 13.620 1.00 37.42 O HETATM 3711 C2 EDO A 505 -40.089 21.020 12.212 1.00 35.12 C HETATM 3712 O2 EDO A 505 -38.924 21.636 11.650 1.00 25.94 O HETATM 3713 O HOH A 601 -33.527 29.959 -4.526 1.00 26.94 O HETATM 3714 O HOH A 602 -27.314 64.575 -17.940 1.00 32.42 O HETATM 3715 O HOH A 603 -18.941 56.501 -2.356 1.00 30.39 O HETATM 3716 O HOH A 604 -27.172 23.438 14.994 1.00 30.57 O HETATM 3717 O HOH A 605 -30.368 19.047 11.084 1.00 23.03 O HETATM 3718 O HOH A 606 -16.995 54.195 -5.931 1.00 28.95 O HETATM 3719 O HOH A 607 -40.489 28.539 -1.306 1.00 31.02 O HETATM 3720 O HOH A 608 -19.085 46.654 -7.269 1.00 35.85 O HETATM 3721 O HOH A 609 -40.855 24.062 15.454 1.00 27.77 O HETATM 3722 O HOH A 610 -10.889 17.200 6.051 1.00 27.28 O HETATM 3723 O HOH A 611 -11.575 54.370 2.750 1.00 26.93 O HETATM 3724 O HOH A 612 -19.310 6.131 -4.399 1.00 52.08 O HETATM 3725 O HOH A 613 -24.391 46.690 -0.953 1.00 31.94 O HETATM 3726 O HOH A 614 -33.721 16.710 10.084 1.00 22.90 O HETATM 3727 O HOH A 615 -26.359 18.855 5.988 1.00 22.95 O HETATM 3728 O HOH A 616 -11.595 10.020 3.660 1.00 31.72 O HETATM 3729 O HOH A 617 -52.747 29.458 15.096 1.00 28.07 O HETATM 3730 O HOH A 618 -22.080 40.978 10.094 1.00 32.94 O HETATM 3731 O HOH A 619 -24.374 72.347 -22.109 1.00 46.47 O HETATM 3732 O HOH A 620 -10.192 36.161 -12.747 1.00 33.32 O HETATM 3733 O HOH A 621 -31.859 25.041 15.406 1.00 39.09 O HETATM 3734 O HOH A 622 -30.679 49.561 -15.138 1.00 39.75 O HETATM 3735 O HOH A 623 -30.353 33.912 6.709 1.00 29.11 O HETATM 3736 O HOH A 624 -27.311 40.719 -16.270 1.00 39.05 O HETATM 3737 O HOH A 625 -29.768 17.026 -0.022 1.00 29.92 O HETATM 3738 O HOH A 626 -35.506 27.099 -9.971 1.00 39.21 O HETATM 3739 O HOH A 627 -10.657 25.789 1.177 1.00 28.53 O HETATM 3740 O HOH A 628 -31.930 32.326 4.500 1.00 31.62 O HETATM 3741 O HOH A 629 -31.621 37.567 -3.689 1.00 34.84 O HETATM 3742 O HOH A 630 -33.513 49.655 -14.446 1.00 43.13 O HETATM 3743 O HOH A 631 -30.598 28.839 -10.331 1.00 27.12 O HETATM 3744 O HOH A 632 -19.431 18.563 10.239 1.00 26.14 O HETATM 3745 O HOH A 633 -33.804 24.031 -5.761 1.00 37.87 O HETATM 3746 O HOH A 634 -17.721 72.376 -5.231 1.00 41.37 O HETATM 3747 O HOH A 635 -36.883 76.113 -15.183 1.00 39.13 O HETATM 3748 O HOH A 636 -11.247 31.593 2.546 1.00 27.48 O HETATM 3749 O HOH A 637 -38.692 19.783 -6.681 1.00 42.17 O HETATM 3750 O HOH A 638 -12.438 23.937 12.661 1.00 35.03 O HETATM 3751 O HOH A 639 -42.052 28.758 -4.343 1.00 39.04 O HETATM 3752 O HOH A 640 -33.546 48.897 -16.957 1.00 31.95 O HETATM 3753 O HOH A 641 -22.539 36.457 -13.908 1.00 34.30 O HETATM 3754 O HOH A 642 -24.283 53.192 20.385 1.00 40.41 O HETATM 3755 O HOH A 643 -11.453 50.903 -19.539 1.00 44.67 O HETATM 3756 O HOH A 644 -20.501 28.524 7.546 1.00 23.69 O HETATM 3757 O HOH A 645 -12.367 25.835 14.741 1.00 42.83 O HETATM 3758 O HOH A 646 -10.025 19.413 -5.599 1.00 33.27 O HETATM 3759 O HOH A 647 -21.471 55.951 27.598 1.00 35.73 O HETATM 3760 O HOH A 648 -39.635 31.507 -4.469 1.00 30.91 O HETATM 3761 O HOH A 649 -30.416 4.174 0.637 1.00 43.33 O HETATM 3762 O HOH A 650 -56.152 30.811 -5.061 1.00 31.99 O HETATM 3763 O HOH A 651 -33.546 38.072 -6.466 1.00 39.48 O HETATM 3764 O HOH A 652 -11.698 58.198 -4.538 1.00 37.83 O HETATM 3765 O HOH A 653 -50.912 20.513 6.722 1.00 37.35 O HETATM 3766 O HOH A 654 -27.309 31.728 9.193 1.00 25.62 O HETATM 3767 O HOH A 655 -28.204 35.134 8.529 1.00 32.69 O HETATM 3768 O HOH A 656 -12.984 57.636 19.420 1.00 42.12 O HETATM 3769 O HOH A 657 -35.685 40.309 17.805 1.00 43.99 O HETATM 3770 O HOH A 658 -30.846 14.633 1.952 1.00 26.71 O HETATM 3771 O HOH A 659 -44.440 32.433 -4.642 1.00 35.35 O HETATM 3772 O HOH A 660 -52.723 22.356 1.193 1.00 32.77 O HETATM 3773 O HOH A 661 -14.255 57.695 -13.828 1.00 37.54 O HETATM 3774 O HOH A 662 -49.743 30.077 -6.059 1.00 37.27 O HETATM 3775 O HOH A 663 -12.632 44.774 28.867 1.00 33.35 O HETATM 3776 O HOH A 664 -23.816 20.753 14.339 1.00 45.50 O HETATM 3777 O HOH A 665 -28.511 38.889 0.316 1.00 40.84 O HETATM 3778 O HOH A 666 -47.056 17.654 2.773 1.00 39.12 O HETATM 3779 O HOH A 667 -42.311 39.887 17.029 1.00 42.33 O HETATM 3780 O HOH A 668 -21.853 6.525 8.479 1.00 36.10 O HETATM 3781 O HOH A 669 -18.701 43.772 10.165 1.00 27.04 O HETATM 3782 O HOH A 670 -23.020 53.895 11.027 1.00 44.89 O HETATM 3783 O HOH A 671 -31.278 8.194 -5.271 1.00 41.12 O HETATM 3784 O HOH A 672 -11.619 35.418 8.284 1.00 27.12 O HETATM 3785 O HOH A 673 -30.213 25.336 -12.575 1.00 30.55 O HETATM 3786 O HOH A 674 -11.119 57.592 22.417 1.00 36.11 O HETATM 3787 O HOH A 675 -49.499 26.174 17.573 1.00 48.57 O HETATM 3788 O HOH A 676 -24.384 37.717 9.616 1.00 42.79 O HETATM 3789 O HOH A 677 -36.332 63.944 10.325 1.00 55.89 O HETATM 3790 O HOH A 678 -28.710 75.318 -10.237 1.00 54.65 O HETATM 3791 O HOH A 679 -38.200 35.138 15.440 1.00 35.66 O HETATM 3792 O HOH A 680 -29.965 46.693 -16.127 1.00 44.97 O HETATM 3793 O HOH A 681 -23.424 25.773 14.704 1.00 45.37 O HETATM 3794 O HOH A 682 -23.230 58.903 -22.167 1.00 34.07 O HETATM 3795 O HOH A 683 -40.964 36.681 -0.041 1.00 27.17 O HETATM 3796 O HOH T 101 -31.187 57.051 8.402 1.00 62.69 O HETATM 3797 O HOH T 102 -26.536 44.126 -7.750 1.00 44.27 O HETATM 3798 O HOH T 103 -46.725 39.513 -2.450 1.00 46.52 O HETATM 3799 O HOH T 104 -50.286 53.915 -6.912 1.00 42.58 O HETATM 3800 O HOH T 105 -48.735 38.341 -1.249 1.00 40.70 O HETATM 3801 O HOH T 106 -34.687 53.161 -3.440 1.00 46.68 O HETATM 3802 O HOH T 107 -23.694 55.283 14.765 1.00 45.16 O HETATM 3803 O HOH T 108 -32.893 48.853 -8.524 1.00 43.46 O HETATM 3804 O HOH T 109 -48.421 42.201 -8.721 1.00 42.68 O HETATM 3805 O HOH P 101 -40.182 40.777 6.739 1.00 29.59 O HETATM 3806 O HOH P 102 -28.918 43.784 -0.235 1.00 40.97 O HETATM 3807 O HOH P 103 -39.263 52.518 4.941 1.00 40.96 O HETATM 3808 O HOH P 104 -42.586 41.980 3.149 1.00 37.83 O HETATM 3809 O HOH P 105 -45.277 41.686 2.994 1.00 36.59 O HETATM 3810 O HOH P 106 -31.292 50.354 6.909 1.00 37.92 O CONECT 80 3671 CONECT 81 3672 CONECT 85 3671 CONECT 897 3672 CONECT 898 3671 CONECT 906 3672 CONECT 3656 3672 CONECT 3671 80 85 898 3687 CONECT 3671 3688 3689 CONECT 3672 81 897 906 3656 CONECT 3672 3687 CONECT 3673 3674 3678 CONECT 3674 3673 3675 CONECT 3675 3674 3676 CONECT 3676 3675 3677 3682 CONECT 3677 3676 3678 3680 CONECT 3678 3673 3677 3679 CONECT 3679 3678 CONECT 3680 3677 3681 CONECT 3681 3680 3682 CONECT 3682 3676 3681 3686 CONECT 3683 3687 3691 3696 3702 CONECT 3684 3688 3692 3696 3697 CONECT 3685 3689 3693 3697 3698 CONECT 3686 3682 3690 3700 CONECT 3687 3671 3672 3683 CONECT 3688 3671 3684 CONECT 3689 3671 3685 CONECT 3690 3686 3694 CONECT 3691 3683 CONECT 3692 3684 CONECT 3693 3685 CONECT 3694 3690 3695 3699 CONECT 3695 3694 CONECT 3696 3683 3684 CONECT 3697 3684 3685 CONECT 3698 3685 CONECT 3699 3694 3700 3701 CONECT 3700 3686 3699 CONECT 3701 3699 3702 CONECT 3702 3683 3701 CONECT 3703 3704 3705 CONECT 3704 3703 CONECT 3705 3703 3706 3707 CONECT 3706 3705 CONECT 3707 3705 3708 CONECT 3708 3707 CONECT 3709 3710 3711 CONECT 3710 3709 CONECT 3711 3709 3712 CONECT 3712 3711 MASTER 320 0 5 20 15 0 12 6 3802 3 51 36 END