HEADER HYDROLASE 19-FEB-13 4JB3 TITLE CRYSTAL STRUCTURE OF BT_0970, A HAD FAMILY PHOSPHATASE FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482, TARGET EFI-501083, WITH BOUND TITLE 3 SODIUM AND GLYCEROL, CLOSED LID, ORDERED LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOACID DEHALOGENASE-LIKE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_0970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HAD, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL GENOMICS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,P.R.KUMAR,A.GHOSH,N.F.AL OBAIDI,M.STEAD, AUTHOR 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,D.DUNAWAY-MARIANO,K.N.ALLEN, AUTHOR 4 J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4JB3 1 REMARK SEQADV LINK REVDAT 1 13-MAR-13 4JB3 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,P.R.KUMAR,A.GHOSH,N.F.AL OBAIDI, JRNL AUTH 2 M.STEAD,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS, JRNL AUTH 3 J.HAMMONDS,B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER, JRNL AUTH 4 D.DUNAWAY-MARIANO,K.N.ALLEN,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF BT_0970, A HAD FAMILY PHOSPHATASE FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482, TARGET EFI-501083, JRNL TITL 3 WITH BOUND SODIUM AND GLYCEROL, CLOSED LID, ORDERED LOOP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 30033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5343 - 3.3355 0.99 2778 138 0.1414 0.1594 REMARK 3 2 3.3355 - 2.6476 1.00 2760 144 0.1513 0.1689 REMARK 3 3 2.6476 - 2.3130 0.99 2737 145 0.1500 0.1810 REMARK 3 4 2.3130 - 2.1015 1.00 2728 145 0.1363 0.1683 REMARK 3 5 2.1015 - 1.9509 1.00 2758 146 0.1412 0.1700 REMARK 3 6 1.9509 - 1.8359 1.00 2735 148 0.1444 0.1765 REMARK 3 7 1.8359 - 1.7439 1.00 2752 141 0.1455 0.1652 REMARK 3 8 1.7439 - 1.6680 1.00 2722 151 0.1465 0.1672 REMARK 3 9 1.6680 - 1.6038 0.95 2580 142 0.1569 0.1820 REMARK 3 10 1.6038 - 1.5484 0.79 2172 115 0.1581 0.2032 REMARK 3 11 1.5484 - 1.5000 0.65 1792 104 0.1743 0.2361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1840 REMARK 3 ANGLE : 1.065 2495 REMARK 3 CHIRALITY : 0.076 267 REMARK 3 PLANARITY : 0.005 325 REMARK 3 DIHEDRAL : 12.984 676 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0871 98.6666 8.3002 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0574 REMARK 3 T33: 0.0379 T12: -0.0035 REMARK 3 T13: -0.0146 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.2319 L22: 5.1025 REMARK 3 L33: 2.9551 L12: -0.2696 REMARK 3 L13: -0.5207 L23: 1.2321 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.0765 S13: -0.0742 REMARK 3 S21: -0.0853 S22: -0.1078 S23: 0.0851 REMARK 3 S31: -0.0035 S32: -0.0960 S33: 0.0506 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9133 75.4609 2.5587 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.0922 REMARK 3 T33: 0.1070 T12: 0.0144 REMARK 3 T13: -0.0315 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.2312 L22: 7.6046 REMARK 3 L33: 5.3682 L12: 0.3989 REMARK 3 L13: -0.7959 L23: -1.2686 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.1780 S13: 0.0414 REMARK 3 S21: -0.6406 S22: -0.0239 S23: -0.0497 REMARK 3 S31: 0.2378 S32: 0.1878 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0763 77.4775 5.4890 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.1940 REMARK 3 T33: 0.1991 T12: -0.0274 REMARK 3 T13: -0.0369 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.8161 L22: 5.4470 REMARK 3 L33: 1.4476 L12: -2.1650 REMARK 3 L13: -0.7099 L23: 1.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: 0.3767 S13: 0.0679 REMARK 3 S21: -0.2391 S22: -0.1061 S23: 0.5348 REMARK 3 S31: -0.0128 S32: -0.2614 S33: 0.0019 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4043 74.7856 17.7166 REMARK 3 T TENSOR REMARK 3 T11: 0.0947 T22: 0.0757 REMARK 3 T33: 0.0897 T12: -0.0140 REMARK 3 T13: -0.0006 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.8374 L22: 4.2846 REMARK 3 L33: 2.2135 L12: -0.3890 REMARK 3 L13: 0.6881 L23: -0.1515 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.0767 S13: -0.0963 REMARK 3 S21: -0.0899 S22: 0.0487 S23: 0.3141 REMARK 3 S31: 0.2206 S32: -0.1848 S33: -0.0637 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 68 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0954 74.5966 12.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.0789 REMARK 3 T33: 0.0857 T12: 0.0073 REMARK 3 T13: 0.0076 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.8024 L22: 4.0550 REMARK 3 L33: 2.8530 L12: 0.4324 REMARK 3 L13: 0.6568 L23: -0.6112 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0839 S13: -0.0346 REMARK 3 S21: -0.0951 S22: -0.1346 S23: -0.3820 REMARK 3 S31: 0.3034 S32: 0.1208 S33: 0.0961 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2339 100.0861 6.3723 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.1083 REMARK 3 T33: 0.0918 T12: -0.0046 REMARK 3 T13: -0.0141 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.0269 L22: 1.2548 REMARK 3 L33: 1.9748 L12: 0.7059 REMARK 3 L13: -0.7082 L23: -0.6864 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0995 S13: -0.1069 REMARK 3 S21: 0.0468 S22: -0.0494 S23: -0.1942 REMARK 3 S31: 0.0980 S32: 0.1067 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9646 93.9538 15.0587 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.0687 REMARK 3 T33: 0.0905 T12: 0.0035 REMARK 3 T13: 0.0008 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.6403 L22: 1.5944 REMARK 3 L33: 0.8210 L12: -0.5085 REMARK 3 L13: 0.0817 L23: -0.6051 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.0478 S13: 0.0553 REMARK 3 S21: 0.0387 S22: -0.0601 S23: -0.1042 REMARK 3 S31: -0.0704 S32: 0.0049 S33: 0.0396 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2402 93.2927 12.8797 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.1683 REMARK 3 T33: 0.1121 T12: 0.0176 REMARK 3 T13: -0.0045 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 5.1734 L22: 1.0536 REMARK 3 L33: 5.8855 L12: -0.0423 REMARK 3 L13: -1.5270 L23: 1.3786 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.0914 S13: 0.0958 REMARK 3 S21: 0.0018 S22: -0.0898 S23: -0.1956 REMARK 3 S31: 0.0321 S32: 0.6550 S33: 0.1013 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0645 95.6247 18.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.0917 REMARK 3 T33: 0.0949 T12: 0.0013 REMARK 3 T13: -0.0205 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.3447 L22: 0.7779 REMARK 3 L33: 0.3704 L12: 0.4973 REMARK 3 L13: 0.0240 L23: -0.2253 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0932 S13: 0.0436 REMARK 3 S21: 0.0829 S22: -0.0769 S23: -0.0609 REMARK 3 S31: -0.0703 S32: 0.0626 S33: 0.0695 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3550 95.6317 19.7459 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1673 REMARK 3 T33: 0.0600 T12: 0.0721 REMARK 3 T13: 0.0437 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5565 L22: 3.5578 REMARK 3 L33: 1.3081 L12: 0.8353 REMARK 3 L13: 0.8359 L23: 1.7052 REMARK 3 S TENSOR REMARK 3 S11: -0.1866 S12: -0.1649 S13: 0.0262 REMARK 3 S21: 0.2537 S22: 0.1441 S23: 0.4501 REMARK 3 S31: -0.1387 S32: -0.3016 S33: 0.0645 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9019 101.1996 10.9239 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.0615 REMARK 3 T33: 0.0360 T12: 0.0061 REMARK 3 T13: -0.0019 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.1865 L22: 3.0542 REMARK 3 L33: 2.9040 L12: 0.0915 REMARK 3 L13: 0.1027 L23: 1.8210 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0270 S13: -0.0102 REMARK 3 S21: 0.2591 S22: -0.0211 S23: 0.0855 REMARK 3 S31: 0.0967 S32: -0.1386 S33: -0.0187 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0704 104.1722 2.4564 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0888 REMARK 3 T33: 0.0690 T12: 0.0203 REMARK 3 T13: -0.0079 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.6267 L22: 0.8709 REMARK 3 L33: 1.5172 L12: 0.6186 REMARK 3 L13: -0.7857 L23: -0.7088 REMARK 3 S TENSOR REMARK 3 S11: 0.0620 S12: 0.0285 S13: 0.0962 REMARK 3 S21: 0.0090 S22: -0.0466 S23: 0.0501 REMARK 3 S31: -0.1470 S32: -0.0984 S33: -0.0203 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -11 THROUGH 0 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8673 114.1588 2.8354 REMARK 3 T TENSOR REMARK 3 T11: 0.8129 T22: 0.4783 REMARK 3 T33: 0.8361 T12: -0.0011 REMARK 3 T13: 0.0402 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.3461 L22: 3.1382 REMARK 3 L33: 3.2360 L12: -0.7855 REMARK 3 L13: -2.0088 L23: 0.9920 REMARK 3 S TENSOR REMARK 3 S11: 0.5810 S12: -0.1434 S13: 0.6788 REMARK 3 S21: 0.7227 S22: 0.1182 S23: -0.4334 REMARK 3 S31: -0.4382 S32: 0.5027 S33: -0.6567 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX 225 HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.517 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2I6X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 150 MM REMARK 280 NACL, 5% GLYCEROL, 1 MM DTT); RESERVOIR (2.4 M SODIUM MALONATE REMARK 280 PH 7.0); CRYOPROTECTION (RESERVOIR, 20% GLYCEROL), SITTING DROP REMARK 280 VAPOR DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.79000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.79000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 486 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 206 O HOH A 560 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 0 -169.10 -165.57 REMARK 500 PHE A 9 -81.13 -91.44 REMARK 500 VAL A 12 -66.18 -126.10 REMARK 500 CYS A 119 49.32 -91.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 GLY A 10 O 91.6 REMARK 620 3 ASP A 172 OD1 109.7 93.8 REMARK 620 4 HOH A 417 O 83.0 174.6 87.5 REMARK 620 5 HOH A 466 O 161.3 99.5 84.6 85.8 REMARK 620 6 HOH A 481 O 80.7 75.0 165.2 104.6 87.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501083 RELATED DB: TARGETTRACK DBREF 4JB3 A 1 206 UNP Q8A947 Q8A947_BACTN 1 206 SEQADV 4JB3 MET A -21 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 HIS A -20 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 HIS A -19 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 HIS A -18 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 HIS A -17 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 HIS A -16 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 HIS A -15 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 SER A -14 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 SER A -13 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 GLY A -12 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 VAL A -11 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 ASP A -10 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 LEU A -9 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 GLY A -8 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 THR A -7 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 GLU A -6 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 ASN A -5 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 LEU A -4 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 TYR A -3 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 PHE A -2 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 GLN A -1 UNP Q8A947 EXPRESSION TAG SEQADV 4JB3 SER A 0 UNP Q8A947 EXPRESSION TAG SEQRES 1 A 228 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 228 GLY THR GLU ASN LEU TYR PHE GLN SER MET ILE LYS ASN SEQRES 3 A 228 ILE VAL PHE ASP PHE GLY GLY VAL ILE VAL ASP ILE ASP SEQRES 4 A 228 ARG ASP LYS ALA VAL GLN ALA PHE ILE LYS LEU GLY LEU SEQRES 5 A 228 ALA ASP ALA ASP THR ARG LEU ASP LYS TYR HIS GLN THR SEQRES 6 A 228 GLY ILE PHE GLN GLU LEU GLU GLU GLY LYS LEU SER ALA SEQRES 7 A 228 ASP GLU PHE ARG LYS GLN LEU GLY ASP LEU CYS GLY ARG SEQRES 8 A 228 GLU LEU THR MET GLU GLU THR LYS GLN ALA TRP LEU GLY SEQRES 9 A 228 PHE PHE ASN GLU VAL ASP LEU ARG LYS LEU ASP TYR ILE SEQRES 10 A 228 LEU GLY LEU ARG LYS SER TYR HIS VAL TYR LEU LEU SER SEQRES 11 A 228 ASN THR ASN PRO PHE VAL MET SER TRP ALA CYS SER PRO SEQRES 12 A 228 GLU PHE SER SER GLU GLY LYS PRO LEU ASN ASP TYR CYS SEQRES 13 A 228 ASP LYS LEU TYR LEU SER TYR GLN LEU GLY HIS THR LYS SEQRES 14 A 228 PRO ALA PRO GLU ILE PHE ASP PHE MET ILE LYS ASP SER SEQRES 15 A 228 HIS VAL ILE PRO SER GLU THR LEU PHE VAL ASP ASP GLY SEQRES 16 A 228 SER SER ASN ILE HIS ILE GLY LYS GLU LEU GLY PHE GLU SEQRES 17 A 228 THR PHE GLN PRO GLU ASN GLY ALA ASP TRP ARG GLN GLU SEQRES 18 A 228 LEU THR VAL ILE LEU ASN SER HET NA A 301 1 HET GOL A 302 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA NA 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *211(H2 O) HELIX 1 1 GLY A -8 LEU A -4 5 5 HELIX 2 2 ASP A 17 LEU A 28 1 12 HELIX 3 3 ASP A 32 LEU A 37 1 6 HELIX 4 4 THR A 43 GLU A 51 1 9 HELIX 5 5 SER A 55 GLY A 68 1 14 HELIX 6 6 THR A 72 GLY A 82 1 11 HELIX 7 7 ASP A 88 ARG A 99 1 12 HELIX 8 8 ASN A 111 CYS A 119 1 9 HELIX 9 9 SER A 120 SER A 124 5 5 HELIX 10 10 PRO A 129 CYS A 134 5 6 HELIX 11 11 SER A 140 GLY A 144 1 5 HELIX 12 12 ALA A 149 HIS A 161 1 13 HELIX 13 13 ILE A 163 SER A 165 5 3 HELIX 14 14 GLY A 173 LEU A 183 1 11 HELIX 15 15 TRP A 196 ASN A 205 1 10 SHEET 1 A 5 LYS A 136 LEU A 139 0 SHEET 2 A 5 HIS A 103 SER A 108 1 N LEU A 106 O TYR A 138 SHEET 3 A 5 ASN A 4 PHE A 7 1 N PHE A 7 O TYR A 105 SHEET 4 A 5 THR A 167 VAL A 170 1 O VAL A 170 N VAL A 6 SHEET 5 A 5 GLU A 186 PHE A 188 1 O GLU A 186 N PHE A 169 LINK OD2 ASP A 8 NA NA A 301 1555 1555 2.25 LINK O GLY A 10 NA NA A 301 1555 1555 2.24 LINK OD1 ASP A 172 NA NA A 301 1555 1555 2.34 LINK NA NA A 301 O HOH A 417 1555 1555 2.40 LINK NA NA A 301 O HOH A 466 1555 1555 2.36 LINK NA NA A 301 O HOH A 481 1555 1555 3.05 CISPEP 1 LYS A 147 PRO A 148 0 11.63 SITE 1 AC1 6 ASP A 8 GLY A 10 ASP A 172 HOH A 417 SITE 2 AC1 6 HOH A 466 HOH A 481 SITE 1 AC2 7 LYS A 39 GLN A 42 GLU A 50 TRP A 80 SITE 2 AC2 7 HOH A 409 HOH A 481 HOH A 582 CRYST1 49.580 91.190 46.270 90.00 104.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020169 0.000000 0.005111 0.00000 SCALE2 0.000000 0.010966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022295 0.00000