data_4JBA # _entry.id 4JBA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JBA RCSB RCSB077829 WWPDB D_1000077829 # _pdbx_database_status.entry_id 4JBA _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-19 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lou, H.' 1 'Zhu, R.' 2 'Hao, Z.' 3 # _citation.id primary _citation.title 'The multiple antibiotic resistance regulator MarR is a copper sensor in Escherichia coli.' _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_volume 10 _citation.page_first 21 _citation.page_last 28 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1552-4450 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24185215 _citation.pdbx_database_id_DOI 10.1038/nchembio.1380 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hao, Z.' 1 primary 'Lou, H.' 2 primary 'Zhu, R.' 3 primary 'Zhu, J.' 4 primary 'Zhang, D.' 5 primary 'Zhao, B.S.' 6 primary 'Zeng, S.' 7 primary 'Chen, X.' 8 primary 'Chan, J.' 9 primary 'He, C.' 10 primary 'Chen, P.R.' 11 # _cell.length_a 62.270 _cell.length_b 62.270 _cell.length_c 161.880 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4JBA _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 4JBA _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Multiple antibiotic resistance protein MarR' 16006.695 2 ? ? ? ? 2 water nat water 18.015 3 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLSSIRSAASITPVELKKVLSVDLGALTRMLDRLVC KGWVERLPNPNDKRGVLVKLTTGGAAISEQSHQLVGQDLHQELTKNLTADEVATLEYLLKKVLP ; _entity_poly.pdbx_seq_one_letter_code_can ;MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLSSIRSAASITPVELKKVLSVDLGALTRMLDRLVC KGWVERLPNPNDKRGVLVKLTTGGAAISEQSHQLVGQDLHQELTKNLTADEVATLEYLLKKVLP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 SER n 1 4 THR n 1 5 SER n 1 6 ASP n 1 7 LEU n 1 8 PHE n 1 9 ASN n 1 10 GLU n 1 11 ILE n 1 12 ILE n 1 13 PRO n 1 14 LEU n 1 15 GLY n 1 16 ARG n 1 17 LEU n 1 18 ILE n 1 19 HIS n 1 20 MET n 1 21 VAL n 1 22 ASN n 1 23 GLN n 1 24 LYS n 1 25 LYS n 1 26 ASP n 1 27 ARG n 1 28 LEU n 1 29 LEU n 1 30 ASN n 1 31 GLU n 1 32 TYR n 1 33 LEU n 1 34 SER n 1 35 PRO n 1 36 LEU n 1 37 ASP n 1 38 ILE n 1 39 THR n 1 40 ALA n 1 41 ALA n 1 42 GLN n 1 43 PHE n 1 44 LYS n 1 45 VAL n 1 46 LEU n 1 47 SER n 1 48 SER n 1 49 ILE n 1 50 ARG n 1 51 SER n 1 52 ALA n 1 53 ALA n 1 54 SER n 1 55 ILE n 1 56 THR n 1 57 PRO n 1 58 VAL n 1 59 GLU n 1 60 LEU n 1 61 LYS n 1 62 LYS n 1 63 VAL n 1 64 LEU n 1 65 SER n 1 66 VAL n 1 67 ASP n 1 68 LEU n 1 69 GLY n 1 70 ALA n 1 71 LEU n 1 72 THR n 1 73 ARG n 1 74 MET n 1 75 LEU n 1 76 ASP n 1 77 ARG n 1 78 LEU n 1 79 VAL n 1 80 CYS n 1 81 LYS n 1 82 GLY n 1 83 TRP n 1 84 VAL n 1 85 GLU n 1 86 ARG n 1 87 LEU n 1 88 PRO n 1 89 ASN n 1 90 PRO n 1 91 ASN n 1 92 ASP n 1 93 LYS n 1 94 ARG n 1 95 GLY n 1 96 VAL n 1 97 LEU n 1 98 VAL n 1 99 LYS n 1 100 LEU n 1 101 THR n 1 102 THR n 1 103 GLY n 1 104 GLY n 1 105 ALA n 1 106 ALA n 1 107 ILE n 1 108 SER n 1 109 GLU n 1 110 GLN n 1 111 SER n 1 112 HIS n 1 113 GLN n 1 114 LEU n 1 115 VAL n 1 116 GLY n 1 117 GLN n 1 118 ASP n 1 119 LEU n 1 120 HIS n 1 121 GLN n 1 122 GLU n 1 123 LEU n 1 124 THR n 1 125 LYS n 1 126 ASN n 1 127 LEU n 1 128 THR n 1 129 ALA n 1 130 ASP n 1 131 GLU n 1 132 VAL n 1 133 ALA n 1 134 THR n 1 135 LEU n 1 136 GLU n 1 137 TYR n 1 138 LEU n 1 139 LEU n 1 140 LYS n 1 141 LYS n 1 142 VAL n 1 143 LEU n 1 144 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b1530, cfxB, inaR, JW5248, marR, soxQ' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MARR_ECOLI _struct_ref.pdbx_db_accession P27245 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVC KGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKVLP ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JBA A 1 ? 144 ? P27245 1 ? 144 ? 1 144 2 1 4JBA B 1 ? 144 ? P27245 1 ? 144 ? 1 144 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JBA SER A 47 ? UNP P27245 CYS 47 CONFLICT 47 1 1 4JBA SER A 51 ? UNP P27245 CYS 51 CONFLICT 51 2 1 4JBA SER A 54 ? UNP P27245 CYS 54 CONFLICT 54 3 1 4JBA SER A 108 ? UNP P27245 CYS 108 CONFLICT 108 4 1 4JBA SER A 111 ? UNP P27245 CYS 111 CONFLICT 111 5 2 4JBA SER B 47 ? UNP P27245 CYS 47 CONFLICT 47 6 2 4JBA SER B 51 ? UNP P27245 CYS 51 CONFLICT 51 7 2 4JBA SER B 54 ? UNP P27245 CYS 54 CONFLICT 54 8 2 4JBA SER B 108 ? UNP P27245 CYS 108 CONFLICT 108 9 2 4JBA SER B 111 ? UNP P27245 CYS 111 CONFLICT 111 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4JBA _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '5% Tacsimate,0.1M HEPES, 10% PEG 5000MME, 0.3M NaCl, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-01-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Monochromator crystal' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U # _reflns.entry_id 4JBA _reflns.d_resolution_high 2.500 _reflns.d_resolution_low 53.960 _reflns.number_all 13187 _reflns.number_obs 13130 _reflns.pdbx_netI_over_sigmaI 11.600 _reflns.pdbx_Rsym_value 0.094 _reflns.pdbx_redundancy 7.500 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.500 2.640 ? 14489 ? 0.781 1.000 0.781 ? 7.800 ? 1868 99.900 1 1 2.640 2.800 ? 13918 ? 0.475 1.600 0.475 ? 7.700 ? 1802 100.000 2 1 2.800 2.990 ? 13015 ? 0.279 2.700 0.279 ? 7.700 ? 1690 100.000 3 1 2.990 3.230 ? 11894 ? 0.152 4.600 0.152 ? 7.600 ? 1563 100.000 4 1 3.230 3.540 ? 11099 ? 0.100 6.200 0.100 ? 7.600 ? 1470 100.000 5 1 3.540 3.950 ? 9990 ? 0.072 7.300 0.072 ? 7.500 ? 1333 100.000 6 1 3.950 4.560 ? 8747 ? 0.081 6.500 0.081 ? 7.300 ? 1191 100.000 7 1 4.560 5.590 ? 7211 ? 0.086 6.500 0.086 ? 7.100 ? 1018 100.000 8 1 5.590 7.910 ? 5407 ? 0.073 7.000 0.073 ? 6.600 ? 818 99.900 9 1 7.910 44.879 ? 2478 ? 0.071 8.000 0.071 ? 5.700 ? 434 90.400 10 1 # _refine.entry_id 4JBA _refine.ls_d_res_high 2.5000 _refine.ls_d_res_low 50.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3600 _refine.ls_number_reflns_obs 13130 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2419 _refine.ls_R_factor_R_work 0.2408 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2636 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 642 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 86.6287 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.2600 _refine.aniso_B[2][2] 2.2600 _refine.aniso_B[3][3] -3.3900 _refine.aniso_B[1][2] 1.1300 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9440 _refine.correlation_coeff_Fo_to_Fc_free 0.9370 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.4420 _refine.pdbx_overall_ESU_R_Free 0.2760 _refine.overall_SU_ML 0.2940 _refine.overall_SU_B 30.3590 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 193.620 _refine.B_iso_min 37.230 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2104 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 2107 _refine_hist.d_res_high 2.5000 _refine_hist.d_res_low 50.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2131 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2886 0.595 2.007 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 266 7.284 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 81 42.485 25.062 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 411 17.316 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 20.606 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 361 0.047 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1508 0.008 0.021 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'TIGHT THERMAL' A 672 7.330 0.500 1 ? ? ? 'X-RAY DIFFRACTION' 2 1 'TIGHT THERMAL' A 374 4.040 0.500 2 ? ? ? # _refine_ls_shell.d_res_high 2.5000 _refine_ls_shell.d_res_low 2.5650 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 790 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3920 _refine_ls_shell.R_factor_R_free 0.4700 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 832 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 1 A 7 A 91 ? . . . . . . . . 1 2 1 1 B 7 B 91 ? . . . . . . . . 2 1 1 1 A 96 A 144 ? . . . . . . . . 2 2 1 1 B 96 B 144 ? . . . . . . . . # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 4JBA _struct.title 'Crystal Structure of the Oxidized Form of MarR from E.coli' _struct.pdbx_descriptor 'Multiple antibiotic resistance protein MarR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JBA _struct_keywords.text 'disulfide bonds, transcription regulator, DNA, TRANSCRIPTION REGULATION' _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 13 ? SER A 34 ? PRO A 13 SER A 34 1 ? 22 HELX_P HELX_P2 2 PRO A 35 ? ASP A 37 ? PRO A 35 ASP A 37 5 ? 3 HELX_P HELX_P3 3 THR A 39 ? ALA A 53 ? THR A 39 ALA A 53 1 ? 15 HELX_P HELX_P4 4 THR A 56 ? SER A 65 ? THR A 56 SER A 65 1 ? 10 HELX_P HELX_P5 5 ASP A 67 ? LYS A 81 ? ASP A 67 LYS A 81 1 ? 15 HELX_P HELX_P6 6 THR A 101 ? THR A 124 ? THR A 101 THR A 124 1 ? 24 HELX_P HELX_P7 7 THR A 128 ? LEU A 143 ? THR A 128 LEU A 143 1 ? 16 HELX_P HELX_P8 8 PRO B 13 ? SER B 34 ? PRO B 13 SER B 34 1 ? 22 HELX_P HELX_P9 9 PRO B 35 ? ASP B 37 ? PRO B 35 ASP B 37 5 ? 3 HELX_P HELX_P10 10 THR B 39 ? ALA B 53 ? THR B 39 ALA B 53 1 ? 15 HELX_P HELX_P11 11 THR B 56 ? SER B 65 ? THR B 56 SER B 65 1 ? 10 HELX_P HELX_P12 12 ASP B 67 ? LYS B 81 ? ASP B 67 LYS B 81 1 ? 15 HELX_P HELX_P13 13 THR B 101 ? THR B 124 ? THR B 101 THR B 124 1 ? 24 HELX_P HELX_P14 14 THR B 128 ? LEU B 143 ? THR B 128 LEU B 143 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 80 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 80 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 80 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 80 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.044 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 84 ? LEU A 87 ? VAL A 84 LEU A 87 A 2 LEU A 97 ? LEU A 100 ? LEU A 97 LEU A 100 B 1 VAL B 84 ? PRO B 88 ? VAL B 84 PRO B 88 B 2 VAL B 96 ? LEU B 100 ? VAL B 96 LEU B 100 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 87 ? N LEU A 87 O LEU A 97 ? O LEU A 97 B 1 2 N LEU B 87 ? N LEU B 87 O LEU B 97 ? O LEU B 97 # _atom_sites.entry_id 4JBA _atom_sites.fract_transf_matrix[1][1] 0.016059 _atom_sites.fract_transf_matrix[1][2] 0.009272 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018543 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006177 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 ASP 6 6 ? ? ? A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 TRP 83 83 83 TRP TRP A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 ASP 92 92 ? ? ? A . n A 1 93 LYS 93 93 ? ? ? A . n A 1 94 ARG 94 94 ? ? ? A . n A 1 95 GLY 95 95 ? ? ? A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 HIS 112 112 112 HIS HIS A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 GLN 117 117 117 GLN GLN A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 THR 128 128 128 THR THR A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 PRO 144 144 144 PRO PRO A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 LYS 2 2 ? ? ? B . n B 1 3 SER 3 3 ? ? ? B . n B 1 4 THR 4 4 ? ? ? B . n B 1 5 SER 5 5 ? ? ? B . n B 1 6 ASP 6 6 6 ASP ASP B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 PHE 8 8 8 PHE PHE B . n B 1 9 ASN 9 9 9 ASN ASN B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 PRO 13 13 13 PRO PRO B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 HIS 19 19 19 HIS HIS B . n B 1 20 MET 20 20 20 MET MET B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 ASN 22 22 22 ASN ASN B . n B 1 23 GLN 23 23 23 GLN GLN B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 ASP 26 26 26 ASP ASP B . n B 1 27 ARG 27 27 27 ARG ARG B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 ASN 30 30 30 ASN ASN B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 PRO 35 35 35 PRO PRO B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 ASP 37 37 37 ASP ASP B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 THR 39 39 39 THR THR B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 GLN 42 42 42 GLN GLN B . n B 1 43 PHE 43 43 43 PHE PHE B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 ARG 50 50 50 ARG ARG B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 SER 54 54 54 SER SER B . n B 1 55 ILE 55 55 55 ILE ILE B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 PRO 57 57 57 PRO PRO B . n B 1 58 VAL 58 58 58 VAL VAL B . n B 1 59 GLU 59 59 59 GLU GLU B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 GLY 69 69 69 GLY GLY B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 THR 72 72 72 THR THR B . n B 1 73 ARG 73 73 73 ARG ARG B . n B 1 74 MET 74 74 74 MET MET B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 ASP 76 76 76 ASP ASP B . n B 1 77 ARG 77 77 77 ARG ARG B . n B 1 78 LEU 78 78 78 LEU LEU B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 CYS 80 80 80 CYS CYS B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 GLY 82 82 82 GLY GLY B . n B 1 83 TRP 83 83 83 TRP TRP B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 ARG 86 86 86 ARG ARG B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 PRO 88 88 88 PRO PRO B . n B 1 89 ASN 89 89 89 ASN ASN B . n B 1 90 PRO 90 90 90 PRO PRO B . n B 1 91 ASN 91 91 91 ASN ASN B . n B 1 92 ASP 92 92 ? ? ? B . n B 1 93 LYS 93 93 ? ? ? B . n B 1 94 ARG 94 94 ? ? ? B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 VAL 98 98 98 VAL VAL B . n B 1 99 LYS 99 99 99 LYS LYS B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 THR 101 101 101 THR THR B . n B 1 102 THR 102 102 102 THR THR B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 GLY 104 104 104 GLY GLY B . n B 1 105 ALA 105 105 105 ALA ALA B . n B 1 106 ALA 106 106 106 ALA ALA B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 GLU 109 109 109 GLU GLU B . n B 1 110 GLN 110 110 110 GLN GLN B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 HIS 112 112 112 HIS HIS B . n B 1 113 GLN 113 113 113 GLN GLN B . n B 1 114 LEU 114 114 114 LEU LEU B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 GLY 116 116 116 GLY GLY B . n B 1 117 GLN 117 117 117 GLN GLN B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 HIS 120 120 120 HIS HIS B . n B 1 121 GLN 121 121 121 GLN GLN B . n B 1 122 GLU 122 122 122 GLU GLU B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 THR 124 124 124 THR THR B . n B 1 125 LYS 125 125 125 LYS LYS B . n B 1 126 ASN 126 126 126 ASN ASN B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 THR 128 128 128 THR THR B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 ASP 130 130 130 ASP ASP B . n B 1 131 GLU 131 131 131 GLU GLU B . n B 1 132 VAL 132 132 132 VAL VAL B . n B 1 133 ALA 133 133 133 ALA ALA B . n B 1 134 THR 134 134 134 THR THR B . n B 1 135 LEU 135 135 135 LEU LEU B . n B 1 136 GLU 136 136 136 GLU GLU B . n B 1 137 TYR 137 137 137 TYR TYR B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 LEU 139 139 139 LEU LEU B . n B 1 140 LYS 140 140 140 LYS LYS B . n B 1 141 LYS 141 141 141 LYS LYS B . n B 1 142 VAL 142 142 142 VAL VAL B . n B 1 143 LEU 143 143 143 LEU LEU B . n B 1 144 PRO 144 144 144 PRO PRO B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4780 ? 1 MORE -33 ? 1 'SSA (A^2)' 14070 ? 2 'ABSA (A^2)' 11600 ? 2 MORE -80 ? 2 'SSA (A^2)' 26110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-16 2 'Structure model' 1 1 2014-04-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -21.9260 -15.2655 17.3155 0.7005 0.6053 0.1937 0.0998 0.0540 -0.1082 0.3036 1.2207 1.3878 0.2414 -0.1710 -1.2128 -0.1831 0.0713 0.1118 -0.3368 0.0999 -0.2008 -0.4944 0.3948 -0.3104 'X-RAY DIFFRACTION' 2 ? refined -15.1891 0.0975 7.9232 0.6517 0.6066 0.5303 0.1030 0.1022 -0.4190 2.2858 8.1215 6.5152 3.9622 -1.4126 0.1521 -0.3969 0.7375 -0.3406 0.2404 -0.0419 -0.3723 -0.3476 0.7808 0.4588 'X-RAY DIFFRACTION' 3 ? refined -33.2448 -7.9118 13.2783 0.8635 0.5240 0.4052 -0.0329 -0.0645 0.1949 0.2417 32.2763 15.0436 -0.9488 0.0321 -20.6731 -0.4042 1.1839 -0.7798 0.1472 0.2486 -0.2541 0.7303 -0.1232 -1.4177 'X-RAY DIFFRACTION' 4 ? refined -28.5483 -17.7085 31.6243 0.5118 0.4775 0.2331 0.0386 0.0236 0.0180 2.7383 3.1730 0.7065 1.3892 -0.6136 -0.6170 0.1888 0.0675 -0.2563 -0.2144 0.0739 0.0583 0.0734 0.0952 -0.1137 'X-RAY DIFFRACTION' 5 ? refined -20.1821 -9.8591 27.9842 0.6814 0.4150 0.2904 0.0714 0.2727 0.0199 8.9445 0.9908 3.3790 -2.3347 -2.6002 -0.2822 0.6196 0.0782 -0.6977 -0.1361 0.4721 0.0074 -0.1514 -0.5210 -0.1630 'X-RAY DIFFRACTION' 6 ? refined -6.4198 -21.5443 15.5381 0.6202 0.5799 0.4830 -0.0319 0.3212 -0.0314 0.6327 4.1922 3.3126 0.7145 1.1620 0.4949 0.1870 0.2549 -0.4419 -0.2098 0.0423 -0.3876 -0.5536 0.2409 -0.3951 'X-RAY DIFFRACTION' 7 ? refined -1.7124 -23.5448 9.2208 0.6599 0.5938 0.1955 -0.0027 0.2043 -0.0492 3.0045 0.8245 3.0928 -1.3510 -1.0025 -0.2450 0.3135 0.0690 -0.3826 0.1905 0.1599 -0.0113 -0.0857 -0.1766 -0.0134 'X-RAY DIFFRACTION' 8 ? refined -15.9767 -21.2105 34.5884 0.5810 0.5104 0.2618 0.0162 0.0123 0.0006 1.2045 0.6614 2.8627 -0.6133 -1.5276 0.2392 0.1008 0.1956 -0.2964 -0.3516 -0.0078 0.1287 -0.1825 0.0145 0.2473 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 7 A 57 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 58 A 101 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 102 A 120 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 121 A 144 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 B 6 B 30 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 B 31 B 65 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 B 66 B 112 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 B 113 B 144 ? . . . . ? # _pdbx_phasing_MR.entry_id 4JBA _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 44.880 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 44.880 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER 2.3.0 'Sun Jun 26 20:05:17 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 53 ? ? 76.76 -51.27 2 1 ALA B 53 ? ? 80.59 -56.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A ASP 6 ? A ASP 6 7 1 Y 1 A ASP 92 ? A ASP 92 8 1 Y 1 A LYS 93 ? A LYS 93 9 1 Y 1 A ARG 94 ? A ARG 94 10 1 Y 1 A GLY 95 ? A GLY 95 11 1 Y 1 B MET 1 ? B MET 1 12 1 Y 1 B LYS 2 ? B LYS 2 13 1 Y 1 B SER 3 ? B SER 3 14 1 Y 1 B THR 4 ? B THR 4 15 1 Y 1 B SER 5 ? B SER 5 16 1 Y 1 B ASP 92 ? B ASP 92 17 1 Y 1 B LYS 93 ? B LYS 93 18 1 Y 1 B ARG 94 ? B ARG 94 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 2 HOH HOH A . D 2 HOH 1 201 1 HOH HOH B . D 2 HOH 2 202 3 HOH HOH B . #