data_4JC1
#
_entry.id 4JC1
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4JC1 pdb_00004jc1 10.2210/pdb4jc1/pdb
RCSB RCSB077856 ? ?
WWPDB D_1000077856 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4JCK
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4JC1
_pdbx_database_status.recvd_initial_deposition_date 2013-02-21
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Collins, P.M.' 1
'Blanchard, H.' 2
#
_citation.id primary
_citation.title
'Investigation into the feasibility of thioditaloside as a novel scaffold for galectin-3-specific inhibitors.'
_citation.journal_abbrev Chembiochem
_citation.journal_volume 14
_citation.page_first 1331
_citation.page_last 1342
_citation.year 2013
_citation.journal_id_ASTM ?
_citation.country GE
_citation.journal_id_ISSN 1439-4227
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 23864426
_citation.pdbx_database_id_DOI 10.1002/cbic.201300245
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Bum-Erdene, K.' 1 ?
primary 'Gagarinov, I.A.' 2 ?
primary 'Collins, P.M.' 3 ?
primary 'Winger, M.' 4 ?
primary 'Pearson, A.G.' 5 ?
primary 'Wilson, J.C.' 6 ?
primary 'Leffler, H.' 7 ?
primary 'Nilsson, U.J.' 8 ?
primary 'Grice, I.D.' 9 ?
primary 'Blanchard, H.' 10 ?
#
_cell.entry_id 4JC1
_cell.length_a 36.788
_cell.length_b 58.003
_cell.length_c 63.378
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4JC1
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man Galectin-3 16054.424 1 ? ?
'galectin-3: unp residues 108-250' ?
2 branched man 'beta-D-galactopyranose-(1-1)-1-thio-beta-D-galactopyranose' 358.362 1 ? ? ? ?
3 non-polymer syn 'CHLORIDE ION' 35.453 5 ? ? ? ?
4 water nat water 18.015 135 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
;Gal-3, 35 kDa lectin, Carbohydrate-binding protein 35, CBP 35, Galactose-specific lectin 3, Galactoside-binding protein, GALBP, IgE-binding protein, L-31, Laminin-binding protein, Lectin L-29, Mac-2 antigen
;
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQ
SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
;
_entity_poly.pdbx_seq_one_letter_code_can
;GAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQ
SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 ALA n
1 3 PRO n
1 4 ALA n
1 5 GLY n
1 6 PRO n
1 7 LEU n
1 8 ILE n
1 9 VAL n
1 10 PRO n
1 11 TYR n
1 12 ASN n
1 13 LEU n
1 14 PRO n
1 15 LEU n
1 16 PRO n
1 17 GLY n
1 18 GLY n
1 19 VAL n
1 20 VAL n
1 21 PRO n
1 22 ARG n
1 23 MET n
1 24 LEU n
1 25 ILE n
1 26 THR n
1 27 ILE n
1 28 LEU n
1 29 GLY n
1 30 THR n
1 31 VAL n
1 32 LYS n
1 33 PRO n
1 34 ASN n
1 35 ALA n
1 36 ASN n
1 37 ARG n
1 38 ILE n
1 39 ALA n
1 40 LEU n
1 41 ASP n
1 42 PHE n
1 43 GLN n
1 44 ARG n
1 45 GLY n
1 46 ASN n
1 47 ASP n
1 48 VAL n
1 49 ALA n
1 50 PHE n
1 51 HIS n
1 52 PHE n
1 53 ASN n
1 54 PRO n
1 55 ARG n
1 56 PHE n
1 57 ASN n
1 58 GLU n
1 59 ASN n
1 60 ASN n
1 61 ARG n
1 62 ARG n
1 63 VAL n
1 64 ILE n
1 65 VAL n
1 66 CYS n
1 67 ASN n
1 68 THR n
1 69 LYS n
1 70 LEU n
1 71 ASP n
1 72 ASN n
1 73 ASN n
1 74 TRP n
1 75 GLY n
1 76 ARG n
1 77 GLU n
1 78 GLU n
1 79 ARG n
1 80 GLN n
1 81 SER n
1 82 VAL n
1 83 PHE n
1 84 PRO n
1 85 PHE n
1 86 GLU n
1 87 SER n
1 88 GLY n
1 89 LYS n
1 90 PRO n
1 91 PHE n
1 92 LYS n
1 93 ILE n
1 94 GLN n
1 95 VAL n
1 96 LEU n
1 97 VAL n
1 98 GLU n
1 99 PRO n
1 100 ASP n
1 101 HIS n
1 102 PHE n
1 103 LYS n
1 104 VAL n
1 105 ALA n
1 106 VAL n
1 107 ASN n
1 108 ASP n
1 109 ALA n
1 110 HIS n
1 111 LEU n
1 112 LEU n
1 113 GLN n
1 114 TYR n
1 115 ASN n
1 116 HIS n
1 117 ARG n
1 118 VAL n
1 119 LYS n
1 120 LYS n
1 121 LEU n
1 122 ASN n
1 123 GLU n
1 124 ILE n
1 125 SER n
1 126 LYS n
1 127 LEU n
1 128 GLY n
1 129 ILE n
1 130 SER n
1 131 GLY n
1 132 ASP n
1 133 ILE n
1 134 ASP n
1 135 LEU n
1 136 THR n
1 137 SER n
1 138 ALA n
1 139 SER n
1 140 TYR n
1 141 THR n
1 142 MET n
1 143 ILE n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'LGALS3, MAC2'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code LEG3_HUMAN
_struct_ref.pdbx_db_accession P17931
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;GAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQ
SVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
;
_struct_ref.pdbx_align_begin 108
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4JC1
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 143
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P17931
_struct_ref_seq.db_align_beg 108
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 250
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 108
_struct_ref_seq.pdbx_auth_seq_align_end 250
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6'
180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
YIO 'D-saccharide, beta linking' . 1-thio-beta-D-galactopyranose
'(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL; 1-thio-beta-D-galactose; 1-thio-D-galactose; 1-thio-galactose'
'C6 H12 O5 S' 196.221
#
_exptl.entry_id 4JC1
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.11
_exptl_crystal.density_percent_sol 41.59
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;Hanging drops consisting of
equal volumes of protein solution (100 mM lactose in PBS pH 7.5
supplemented with 2 mM CaCl2 and a protein concentration of
10 mg ml
1) and reservoir solution [100 mM Tris HCl,
31%(w/v) PEG 6000, 100 mM MgCl2 and 8 mM -mercaptoethanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 295
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'BRUKER SMART 6000'
_diffrn_detector.pdbx_collection_date 2011-06-23
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type MACSCIENCE
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 4JC1
_reflns.observed_criterion_sigma_I 1.0
_reflns.observed_criterion_sigma_F 1.0
_reflns.d_resolution_low 58.0
_reflns.d_resolution_high 1.5
_reflns.number_obs 21329
_reflns.number_all 115029
_reflns.percent_possible_obs 95.5
_reflns.pdbx_Rmerge_I_obs 0.040
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 20.9
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 5.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.50
_reflns_shell.d_res_low 1.58
_reflns_shell.percent_possible_all 84.1
_reflns_shell.Rmerge_I_obs 0.142
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 3.5
_reflns_shell.pdbx_redundancy 1.5
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4JC1
_refine.ls_number_reflns_obs 20202
_refine.ls_number_reflns_all 21329
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 42.79
_refine.ls_d_res_high 1.50
_refine.ls_percent_reflns_obs 95.14
_refine.ls_R_factor_obs 0.13609
_refine.ls_R_factor_all 0.18
_refine.ls_R_factor_R_work 0.13537
_refine.ls_R_factor_R_free 0.14938
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.1
_refine.ls_number_reflns_R_free 1085
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.967
_refine.correlation_coeff_Fo_to_Fc_free 0.972
_refine.B_iso_mean 11.799
_refine.aniso_B[1][1] 0.77
_refine.aniso_B[2][2] -0.60
_refine.aniso_B[3][3] -0.17
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'BABINET MODEL PARAMETERS FOR MASK CACLULATION'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT'
_refine.pdbx_starting_model 'pdb entry 1A3K'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.091
_refine.pdbx_overall_ESU_R_Free 0.061
_refine.overall_SU_ML 0.034
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 1.971
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1108
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 28
_refine_hist.number_atoms_solvent 135
_refine_hist.number_atoms_total 1271
_refine_hist.d_res_high 1.50
_refine_hist.d_res_low 42.79
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.008 0.019 ? 1311 ? 'X-RAY DIFFRACTION'
r_bond_other_d 0.001 0.020 ? 912 ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 1.309 1.944 ? 1791 ? 'X-RAY DIFFRACTION'
r_angle_other_deg 0.782 3.000 ? 2232 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg 6.752 5.000 ? 167 ? 'X-RAY DIFFRACTION'
r_chiral_restr 0.087 0.200 ? 198 ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.005 0.020 ? 1471 ? 'X-RAY DIFFRACTION'
r_gen_planes_other 0.002 0.020 ? 268 ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr 3.465 3.000 ? 7128 ? 'X-RAY DIFFRACTION'
r_sphericity_free 9.118 5.000 ? 140 ? 'X-RAY DIFFRACTION'
r_sphericity_bonded 5.214 5.000 ? 2181 ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.500
_refine_ls_shell.d_res_low 1.539
_refine_ls_shell.number_reflns_R_work 1230
_refine_ls_shell.R_factor_R_work 0.142
_refine_ls_shell.percent_reflns_obs 80.46
_refine_ls_shell.R_factor_R_free 0.176
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 75
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 4JC1
_struct.title 'Galectin-3 carbohydrate recognition domain in complex with thiodigalactoside'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4JC1
_struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN'
_struct_keywords.text 'beta sandwich, carbohydrate binding protein, SUGAR BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 3 ?
F N N 3 ?
G N N 3 ?
H N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
_struct_conf.conf_type_id HELX_P
_struct_conf.id HELX_P1
_struct_conf.pdbx_PDB_helix_id 1
_struct_conf.beg_label_comp_id LYS
_struct_conf.beg_label_asym_id A
_struct_conf.beg_label_seq_id 120
_struct_conf.pdbx_beg_PDB_ins_code ?
_struct_conf.end_label_comp_id ILE
_struct_conf.end_label_asym_id A
_struct_conf.end_label_seq_id 124
_struct_conf.pdbx_end_PDB_ins_code ?
_struct_conf.beg_auth_comp_id LYS
_struct_conf.beg_auth_asym_id A
_struct_conf.beg_auth_seq_id 227
_struct_conf.end_auth_comp_id ILE
_struct_conf.end_auth_asym_id A
_struct_conf.end_auth_seq_id 231
_struct_conf.pdbx_PDB_helix_class 5
_struct_conf.details ?
_struct_conf.pdbx_PDB_helix_length 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
_struct_conn.id covale1
_struct_conn.conn_type_id covale
_struct_conn.pdbx_leaving_atom_flag one
_struct_conn.pdbx_PDB_id ?
_struct_conn.ptnr1_label_asym_id B
_struct_conn.ptnr1_label_comp_id YIO
_struct_conn.ptnr1_label_seq_id .
_struct_conn.ptnr1_label_atom_id S1
_struct_conn.pdbx_ptnr1_label_alt_id ?
_struct_conn.pdbx_ptnr1_PDB_ins_code ?
_struct_conn.pdbx_ptnr1_standard_comp_id ?
_struct_conn.ptnr1_symmetry 1_555
_struct_conn.ptnr2_label_asym_id B
_struct_conn.ptnr2_label_comp_id GAL
_struct_conn.ptnr2_label_seq_id .
_struct_conn.ptnr2_label_atom_id C1
_struct_conn.pdbx_ptnr2_label_alt_id ?
_struct_conn.pdbx_ptnr2_PDB_ins_code ?
_struct_conn.ptnr1_auth_asym_id C
_struct_conn.ptnr1_auth_comp_id YIO
_struct_conn.ptnr1_auth_seq_id 1
_struct_conn.ptnr2_auth_asym_id C
_struct_conn.ptnr2_auth_comp_id GAL
_struct_conn.ptnr2_auth_seq_id 2
_struct_conn.ptnr2_symmetry 1_555
_struct_conn.pdbx_ptnr3_label_atom_id ?
_struct_conn.pdbx_ptnr3_label_seq_id ?
_struct_conn.pdbx_ptnr3_label_comp_id ?
_struct_conn.pdbx_ptnr3_label_asym_id ?
_struct_conn.pdbx_ptnr3_label_alt_id ?
_struct_conn.pdbx_ptnr3_PDB_ins_code ?
_struct_conn.details ?
_struct_conn.pdbx_dist_value 1.764
_struct_conn.pdbx_value_order sing
_struct_conn.pdbx_role ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id VAL
_struct_mon_prot_cis.label_seq_id 9
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id VAL
_struct_mon_prot_cis.auth_seq_id 116
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 10
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 117
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle 0.37
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 6 ?
B ? 6 ?
C ? 5 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
B 5 6 ? anti-parallel
C 1 2 ? anti-parallel
C 2 3 ? anti-parallel
C 3 4 ? anti-parallel
C 4 5 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 TYR A 11 ? PRO A 14 ? TYR A 118 PRO A 121
A 2 LYS A 126 ? GLY A 131 ? LYS A 233 GLY A 238
A 3 ILE A 38 ? ARG A 44 ? ILE A 145 ARG A 151
A 4 ASP A 47 ? GLU A 58 ? ASP A 154 GLU A 165
A 5 ARG A 61 ? LEU A 70 ? ARG A 168 LEU A 177
A 6 ASN A 73 ? TRP A 74 ? ASN A 180 TRP A 181
B 1 TYR A 11 ? PRO A 14 ? TYR A 118 PRO A 121
B 2 LYS A 126 ? GLY A 131 ? LYS A 233 GLY A 238
B 3 ILE A 38 ? ARG A 44 ? ILE A 145 ARG A 151
B 4 ASP A 47 ? GLU A 58 ? ASP A 154 GLU A 165
B 5 ARG A 61 ? LEU A 70 ? ARG A 168 LEU A 177
B 6 GLU A 78 ? GLN A 80 ? GLU A 185 GLN A 187
C 1 ALA A 109 ? ASN A 115 ? ALA A 216 ASN A 222
C 2 HIS A 101 ? VAL A 106 ? HIS A 208 VAL A 213
C 3 PRO A 90 ? VAL A 97 ? PRO A 197 VAL A 204
C 4 MET A 23 ? VAL A 31 ? MET A 130 VAL A 138
C 5 ILE A 133 ? MET A 142 ? ILE A 240 MET A 249
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N LEU A 13 ? N LEU A 120 O LEU A 127 ? O LEU A 234
A 2 3 O LYS A 126 ? O LYS A 233 N GLN A 43 ? N GLN A 150
A 3 4 N PHE A 42 ? N PHE A 149 O PHE A 50 ? O PHE A 157
A 4 5 N ARG A 55 ? N ARG A 162 O VAL A 63 ? O VAL A 170
A 5 6 N LEU A 70 ? N LEU A 177 O ASN A 73 ? O ASN A 180
B 1 2 N LEU A 13 ? N LEU A 120 O LEU A 127 ? O LEU A 234
B 2 3 O LYS A 126 ? O LYS A 233 N GLN A 43 ? N GLN A 150
B 3 4 N PHE A 42 ? N PHE A 149 O PHE A 50 ? O PHE A 157
B 4 5 N ARG A 55 ? N ARG A 162 O VAL A 63 ? O VAL A 170
B 5 6 N ILE A 64 ? N ILE A 171 O GLN A 80 ? O GLN A 187
C 1 2 O LEU A 111 ? O LEU A 218 N VAL A 104 ? N VAL A 211
C 2 3 O ALA A 105 ? O ALA A 212 N GLN A 94 ? N GLN A 201
C 3 4 O VAL A 95 ? O VAL A 202 N ILE A 25 ? N ILE A 132
C 4 5 N LEU A 24 ? N LEU A 131 O THR A 141 ? O THR A 248
#
_database_PDB_matrix.entry_id 4JC1
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 4JC1
_atom_sites.fract_transf_matrix[1][1] 0.027183
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017241
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015778
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CL
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 108 ? ? ? A . n
A 1 2 ALA 2 109 ? ? ? A . n
A 1 3 PRO 3 110 ? ? ? A . n
A 1 4 ALA 4 111 ? ? ? A . n
A 1 5 GLY 5 112 ? ? ? A . n
A 1 6 PRO 6 113 113 PRO PRO A . n
A 1 7 LEU 7 114 114 LEU LEU A . n
A 1 8 ILE 8 115 115 ILE ILE A . n
A 1 9 VAL 9 116 116 VAL VAL A . n
A 1 10 PRO 10 117 117 PRO PRO A . n
A 1 11 TYR 11 118 118 TYR TYR A . n
A 1 12 ASN 12 119 119 ASN ASN A . n
A 1 13 LEU 13 120 120 LEU LEU A . n
A 1 14 PRO 14 121 121 PRO PRO A . n
A 1 15 LEU 15 122 122 LEU LEU A . n
A 1 16 PRO 16 123 123 PRO PRO A . n
A 1 17 GLY 17 124 124 GLY GLY A . n
A 1 18 GLY 18 125 125 GLY GLY A . n
A 1 19 VAL 19 126 126 VAL VAL A . n
A 1 20 VAL 20 127 127 VAL VAL A . n
A 1 21 PRO 21 128 128 PRO PRO A . n
A 1 22 ARG 22 129 129 ARG ARG A . n
A 1 23 MET 23 130 130 MET MET A . n
A 1 24 LEU 24 131 131 LEU LEU A . n
A 1 25 ILE 25 132 132 ILE ILE A . n
A 1 26 THR 26 133 133 THR THR A . n
A 1 27 ILE 27 134 134 ILE ILE A . n
A 1 28 LEU 28 135 135 LEU LEU A . n
A 1 29 GLY 29 136 136 GLY GLY A . n
A 1 30 THR 30 137 137 THR THR A . n
A 1 31 VAL 31 138 138 VAL VAL A . n
A 1 32 LYS 32 139 139 LYS LYS A . n
A 1 33 PRO 33 140 140 PRO PRO A . n
A 1 34 ASN 34 141 141 ASN ASN A . n
A 1 35 ALA 35 142 142 ALA ALA A . n
A 1 36 ASN 36 143 143 ASN ASN A . n
A 1 37 ARG 37 144 144 ARG ARG A . n
A 1 38 ILE 38 145 145 ILE ILE A . n
A 1 39 ALA 39 146 146 ALA ALA A . n
A 1 40 LEU 40 147 147 LEU LEU A . n
A 1 41 ASP 41 148 148 ASP ASP A . n
A 1 42 PHE 42 149 149 PHE PHE A . n
A 1 43 GLN 43 150 150 GLN GLN A . n
A 1 44 ARG 44 151 151 ARG ARG A . n
A 1 45 GLY 45 152 152 GLY GLY A . n
A 1 46 ASN 46 153 153 ASN ASN A . n
A 1 47 ASP 47 154 154 ASP ASP A . n
A 1 48 VAL 48 155 155 VAL VAL A . n
A 1 49 ALA 49 156 156 ALA ALA A . n
A 1 50 PHE 50 157 157 PHE PHE A . n
A 1 51 HIS 51 158 158 HIS HIS A . n
A 1 52 PHE 52 159 159 PHE PHE A . n
A 1 53 ASN 53 160 160 ASN ASN A . n
A 1 54 PRO 54 161 161 PRO PRO A . n
A 1 55 ARG 55 162 162 ARG ARG A . n
A 1 56 PHE 56 163 163 PHE PHE A . n
A 1 57 ASN 57 164 164 ASN ASN A . n
A 1 58 GLU 58 165 165 GLU GLU A . n
A 1 59 ASN 59 166 166 ASN ASN A . n
A 1 60 ASN 60 167 167 ASN ASN A . n
A 1 61 ARG 61 168 168 ARG ARG A . n
A 1 62 ARG 62 169 169 ARG ARG A . n
A 1 63 VAL 63 170 170 VAL VAL A . n
A 1 64 ILE 64 171 171 ILE ILE A . n
A 1 65 VAL 65 172 172 VAL VAL A . n
A 1 66 CYS 66 173 173 CYS CYS A . n
A 1 67 ASN 67 174 174 ASN ASN A . n
A 1 68 THR 68 175 175 THR THR A . n
A 1 69 LYS 69 176 176 LYS LYS A . n
A 1 70 LEU 70 177 177 LEU LEU A . n
A 1 71 ASP 71 178 178 ASP ASP A . n
A 1 72 ASN 72 179 179 ASN ASN A . n
A 1 73 ASN 73 180 180 ASN ASN A . n
A 1 74 TRP 74 181 181 TRP TRP A . n
A 1 75 GLY 75 182 182 GLY GLY A . n
A 1 76 ARG 76 183 183 ARG ARG A . n
A 1 77 GLU 77 184 184 GLU GLU A . n
A 1 78 GLU 78 185 185 GLU GLU A . n
A 1 79 ARG 79 186 186 ARG ARG A . n
A 1 80 GLN 80 187 187 GLN GLN A . n
A 1 81 SER 81 188 188 SER SER A . n
A 1 82 VAL 82 189 189 VAL VAL A . n
A 1 83 PHE 83 190 190 PHE PHE A . n
A 1 84 PRO 84 191 191 PRO PRO A . n
A 1 85 PHE 85 192 192 PHE PHE A . n
A 1 86 GLU 86 193 193 GLU GLU A . n
A 1 87 SER 87 194 194 SER SER A . n
A 1 88 GLY 88 195 195 GLY GLY A . n
A 1 89 LYS 89 196 196 LYS LYS A . n
A 1 90 PRO 90 197 197 PRO PRO A . n
A 1 91 PHE 91 198 198 PHE PHE A . n
A 1 92 LYS 92 199 199 LYS LYS A . n
A 1 93 ILE 93 200 200 ILE ILE A . n
A 1 94 GLN 94 201 201 GLN GLN A . n
A 1 95 VAL 95 202 202 VAL VAL A . n
A 1 96 LEU 96 203 203 LEU LEU A . n
A 1 97 VAL 97 204 204 VAL VAL A . n
A 1 98 GLU 98 205 205 GLU GLU A . n
A 1 99 PRO 99 206 206 PRO PRO A . n
A 1 100 ASP 100 207 207 ASP ASP A . n
A 1 101 HIS 101 208 208 HIS HIS A . n
A 1 102 PHE 102 209 209 PHE PHE A . n
A 1 103 LYS 103 210 210 LYS LYS A . n
A 1 104 VAL 104 211 211 VAL VAL A . n
A 1 105 ALA 105 212 212 ALA ALA A . n
A 1 106 VAL 106 213 213 VAL VAL A . n
A 1 107 ASN 107 214 214 ASN ASN A . n
A 1 108 ASP 108 215 215 ASP ASP A . n
A 1 109 ALA 109 216 216 ALA ALA A . n
A 1 110 HIS 110 217 217 HIS HIS A . n
A 1 111 LEU 111 218 218 LEU LEU A . n
A 1 112 LEU 112 219 219 LEU LEU A . n
A 1 113 GLN 113 220 220 GLN GLN A . n
A 1 114 TYR 114 221 221 TYR TYR A . n
A 1 115 ASN 115 222 222 ASN ASN A . n
A 1 116 HIS 116 223 223 HIS HIS A . n
A 1 117 ARG 117 224 224 ARG ARG A . n
A 1 118 VAL 118 225 225 VAL VAL A . n
A 1 119 LYS 119 226 226 LYS LYS A . n
A 1 120 LYS 120 227 227 LYS LYS A . n
A 1 121 LEU 121 228 228 LEU LEU A . n
A 1 122 ASN 122 229 229 ASN ASN A . n
A 1 123 GLU 123 230 230 GLU GLU A . n
A 1 124 ILE 124 231 231 ILE ILE A . n
A 1 125 SER 125 232 232 SER SER A . n
A 1 126 LYS 126 233 233 LYS LYS A . n
A 1 127 LEU 127 234 234 LEU LEU A . n
A 1 128 GLY 128 235 235 GLY GLY A . n
A 1 129 ILE 129 236 236 ILE ILE A . n
A 1 130 SER 130 237 237 SER SER A . n
A 1 131 GLY 131 238 238 GLY GLY A . n
A 1 132 ASP 132 239 239 ASP ASP A . n
A 1 133 ILE 133 240 240 ILE ILE A . n
A 1 134 ASP 134 241 241 ASP ASP A . n
A 1 135 LEU 135 242 242 LEU LEU A . n
A 1 136 THR 136 243 243 THR THR A . n
A 1 137 SER 137 244 244 SER SER A . n
A 1 138 ALA 138 245 245 ALA ALA A . n
A 1 139 SER 139 246 246 SER SER A . n
A 1 140 TYR 140 247 247 TYR TYR A . n
A 1 141 THR 141 248 248 THR THR A . n
A 1 142 MET 142 249 249 MET MET A . n
A 1 143 ILE 143 250 250 ILE ILE A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL 1 301 1 CL CL A .
D 3 CL 1 302 1 CL CL A .
E 3 CL 1 304 1 CL CL A .
F 3 CL 1 305 1 CL CL A .
G 3 CL 1 306 1 CL CL A .
H 4 HOH 1 401 1 HOH HOH A .
H 4 HOH 2 402 2 HOH HOH A .
H 4 HOH 3 403 3 HOH HOH A .
H 4 HOH 4 404 4 HOH HOH A .
H 4 HOH 5 405 5 HOH HOH A .
H 4 HOH 6 406 6 HOH HOH A .
H 4 HOH 7 407 7 HOH HOH A .
H 4 HOH 8 408 8 HOH HOH A .
H 4 HOH 9 409 9 HOH HOH A .
H 4 HOH 10 410 10 HOH HOH A .
H 4 HOH 11 411 11 HOH HOH A .
H 4 HOH 12 412 12 HOH HOH A .
H 4 HOH 13 413 13 HOH HOH A .
H 4 HOH 14 414 14 HOH HOH A .
H 4 HOH 15 415 15 HOH HOH A .
H 4 HOH 16 416 16 HOH HOH A .
H 4 HOH 17 417 17 HOH HOH A .
H 4 HOH 18 418 18 HOH HOH A .
H 4 HOH 19 419 19 HOH HOH A .
H 4 HOH 20 420 20 HOH HOH A .
H 4 HOH 21 421 21 HOH HOH A .
H 4 HOH 22 422 22 HOH HOH A .
H 4 HOH 23 423 23 HOH HOH A .
H 4 HOH 24 424 24 HOH HOH A .
H 4 HOH 25 425 25 HOH HOH A .
H 4 HOH 26 426 26 HOH HOH A .
H 4 HOH 27 427 27 HOH HOH A .
H 4 HOH 28 428 28 HOH HOH A .
H 4 HOH 29 429 29 HOH HOH A .
H 4 HOH 30 430 30 HOH HOH A .
H 4 HOH 31 431 31 HOH HOH A .
H 4 HOH 32 432 32 HOH HOH A .
H 4 HOH 33 433 33 HOH HOH A .
H 4 HOH 34 434 34 HOH HOH A .
H 4 HOH 35 435 35 HOH HOH A .
H 4 HOH 36 436 36 HOH HOH A .
H 4 HOH 37 437 37 HOH HOH A .
H 4 HOH 38 438 38 HOH HOH A .
H 4 HOH 39 439 39 HOH HOH A .
H 4 HOH 40 440 40 HOH HOH A .
H 4 HOH 41 441 41 HOH HOH A .
H 4 HOH 42 442 42 HOH HOH A .
H 4 HOH 43 443 43 HOH HOH A .
H 4 HOH 44 444 44 HOH HOH A .
H 4 HOH 45 445 45 HOH HOH A .
H 4 HOH 46 446 46 HOH HOH A .
H 4 HOH 47 447 47 HOH HOH A .
H 4 HOH 48 448 48 HOH HOH A .
H 4 HOH 49 449 49 HOH HOH A .
H 4 HOH 50 450 50 HOH HOH A .
H 4 HOH 51 451 51 HOH HOH A .
H 4 HOH 52 452 52 HOH HOH A .
H 4 HOH 53 453 53 HOH HOH A .
H 4 HOH 54 454 54 HOH HOH A .
H 4 HOH 55 455 55 HOH HOH A .
H 4 HOH 56 456 56 HOH HOH A .
H 4 HOH 57 457 57 HOH HOH A .
H 4 HOH 58 458 58 HOH HOH A .
H 4 HOH 59 459 59 HOH HOH A .
H 4 HOH 60 460 60 HOH HOH A .
H 4 HOH 61 461 61 HOH HOH A .
H 4 HOH 62 462 62 HOH HOH A .
H 4 HOH 63 463 63 HOH HOH A .
H 4 HOH 64 464 64 HOH HOH A .
H 4 HOH 65 465 65 HOH HOH A .
H 4 HOH 66 466 66 HOH HOH A .
H 4 HOH 67 467 67 HOH HOH A .
H 4 HOH 68 468 68 HOH HOH A .
H 4 HOH 69 469 69 HOH HOH A .
H 4 HOH 70 470 70 HOH HOH A .
H 4 HOH 71 471 71 HOH HOH A .
H 4 HOH 72 472 72 HOH HOH A .
H 4 HOH 73 473 73 HOH HOH A .
H 4 HOH 74 474 74 HOH HOH A .
H 4 HOH 75 475 75 HOH HOH A .
H 4 HOH 76 476 76 HOH HOH A .
H 4 HOH 77 477 77 HOH HOH A .
H 4 HOH 78 478 78 HOH HOH A .
H 4 HOH 79 479 79 HOH HOH A .
H 4 HOH 80 480 80 HOH HOH A .
H 4 HOH 81 481 81 HOH HOH A .
H 4 HOH 82 482 82 HOH HOH A .
H 4 HOH 83 483 83 HOH HOH A .
H 4 HOH 84 484 84 HOH HOH A .
H 4 HOH 85 485 85 HOH HOH A .
H 4 HOH 86 486 86 HOH HOH A .
H 4 HOH 87 487 87 HOH HOH A .
H 4 HOH 88 488 88 HOH HOH A .
H 4 HOH 89 489 89 HOH HOH A .
H 4 HOH 90 490 90 HOH HOH A .
H 4 HOH 91 491 91 HOH HOH A .
H 4 HOH 92 492 92 HOH HOH A .
H 4 HOH 93 493 93 HOH HOH A .
H 4 HOH 94 494 94 HOH HOH A .
H 4 HOH 95 495 95 HOH HOH A .
H 4 HOH 96 496 96 HOH HOH A .
H 4 HOH 97 497 97 HOH HOH A .
H 4 HOH 98 498 98 HOH HOH A .
H 4 HOH 99 499 99 HOH HOH A .
H 4 HOH 100 500 100 HOH HOH A .
H 4 HOH 101 501 102 HOH HOH A .
H 4 HOH 102 502 103 HOH HOH A .
H 4 HOH 103 503 104 HOH HOH A .
H 4 HOH 104 504 105 HOH HOH A .
H 4 HOH 105 505 106 HOH HOH A .
H 4 HOH 106 506 107 HOH HOH A .
H 4 HOH 107 507 108 HOH HOH A .
H 4 HOH 108 508 109 HOH HOH A .
H 4 HOH 109 509 110 HOH HOH A .
H 4 HOH 110 510 111 HOH HOH A .
H 4 HOH 111 511 112 HOH HOH A .
H 4 HOH 112 512 113 HOH HOH A .
H 4 HOH 113 513 114 HOH HOH A .
H 4 HOH 114 514 115 HOH HOH A .
H 4 HOH 115 515 116 HOH HOH A .
H 4 HOH 116 516 117 HOH HOH A .
H 4 HOH 117 517 118 HOH HOH A .
H 4 HOH 118 518 119 HOH HOH A .
H 4 HOH 119 519 120 HOH HOH A .
H 4 HOH 120 520 121 HOH HOH A .
H 4 HOH 121 521 122 HOH HOH A .
H 4 HOH 122 522 123 HOH HOH A .
H 4 HOH 123 523 124 HOH HOH A .
H 4 HOH 124 524 125 HOH HOH A .
H 4 HOH 125 525 126 HOH HOH A .
H 4 HOH 126 526 127 HOH HOH A .
H 4 HOH 127 527 128 HOH HOH A .
H 4 HOH 128 528 129 HOH HOH A .
H 4 HOH 129 529 130 HOH HOH A .
H 4 HOH 130 530 131 HOH HOH A .
H 4 HOH 131 531 132 HOH HOH A .
H 4 HOH 132 532 133 HOH HOH A .
H 4 HOH 133 533 134 HOH HOH A .
H 4 HOH 134 534 135 HOH HOH A .
H 4 HOH 135 535 136 HOH HOH A .
#
_pdbx_molecule_features.prd_id PRD_900027
_pdbx_molecule_features.name thiodigalactoside
_pdbx_molecule_features.type Oligosaccharide
_pdbx_molecule_features.class 'Substrate analog'
_pdbx_molecule_features.details
'oligosaccharide with S-glycosidic bond between monosaccharides, and with reducing-end-to-reducing-end glycosidic bond'
#
_pdbx_molecule.instance_id 1
_pdbx_molecule.prd_id PRD_900027
_pdbx_molecule.asym_id B
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2013-07-31
2 'Structure model' 2 0 2020-07-29
3 'Structure model' 3 0 2020-08-12
4 'Structure model' 3 1 2023-09-20
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Atomic model'
2 2 'Structure model' 'Data collection'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Non-polymer description'
5 2 'Structure model' 'Structure summary'
6 3 'Structure model' 'Atomic model'
7 3 'Structure model' 'Data collection'
8 3 'Structure model' 'Derived calculations'
9 3 'Structure model' 'Structure summary'
10 4 'Structure model' 'Data collection'
11 4 'Structure model' 'Database references'
12 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' atom_site
2 2 'Structure model' atom_site_anisotrop
3 2 'Structure model' chem_comp
4 2 'Structure model' entity
5 2 'Structure model' pdbx_branch_scheme
6 2 'Structure model' pdbx_chem_comp_identifier
7 2 'Structure model' pdbx_entity_branch
8 2 'Structure model' pdbx_entity_branch_descriptor
9 2 'Structure model' pdbx_entity_branch_link
10 2 'Structure model' pdbx_entity_branch_list
11 2 'Structure model' pdbx_entity_nonpoly
12 2 'Structure model' pdbx_nonpoly_scheme
13 2 'Structure model' struct_asym
14 2 'Structure model' struct_conn
15 2 'Structure model' struct_site
16 2 'Structure model' struct_site_gen
17 3 'Structure model' atom_site
18 3 'Structure model' atom_site_anisotrop
19 3 'Structure model' chem_comp
20 3 'Structure model' pdbx_branch_scheme
21 3 'Structure model' pdbx_molecule_features
22 3 'Structure model' struct_conn
23 4 'Structure model' chem_comp_atom
24 4 'Structure model' chem_comp_bond
25 4 'Structure model' database_2
26 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_atom_site.B_iso_or_equiv'
2 2 'Structure model' '_atom_site.Cartn_x'
3 2 'Structure model' '_atom_site.Cartn_y'
4 2 'Structure model' '_atom_site.Cartn_z'
5 2 'Structure model' '_atom_site.auth_asym_id'
6 2 'Structure model' '_atom_site.auth_atom_id'
7 2 'Structure model' '_atom_site.auth_comp_id'
8 2 'Structure model' '_atom_site.auth_seq_id'
9 2 'Structure model' '_atom_site.label_asym_id'
10 2 'Structure model' '_atom_site.label_atom_id'
11 2 'Structure model' '_atom_site.label_comp_id'
12 2 'Structure model' '_atom_site.label_entity_id'
13 2 'Structure model' '_atom_site.occupancy'
14 2 'Structure model' '_atom_site.type_symbol'
15 2 'Structure model' '_atom_site_anisotrop.U[1][1]'
16 2 'Structure model' '_atom_site_anisotrop.U[1][2]'
17 2 'Structure model' '_atom_site_anisotrop.U[1][3]'
18 2 'Structure model' '_atom_site_anisotrop.U[2][2]'
19 2 'Structure model' '_atom_site_anisotrop.U[2][3]'
20 2 'Structure model' '_atom_site_anisotrop.U[3][3]'
21 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
22 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
23 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id'
24 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id'
25 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id'
26 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
27 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id'
28 2 'Structure model' '_atom_site_anisotrop.type_symbol'
29 2 'Structure model' '_chem_comp.formula'
30 2 'Structure model' '_chem_comp.formula_weight'
31 2 'Structure model' '_chem_comp.id'
32 2 'Structure model' '_chem_comp.mon_nstd_flag'
33 2 'Structure model' '_chem_comp.name'
34 2 'Structure model' '_chem_comp.type'
35 2 'Structure model' '_entity.formula_weight'
36 2 'Structure model' '_entity.pdbx_description'
37 2 'Structure model' '_entity.pdbx_number_of_molecules'
38 2 'Structure model' '_entity.src_method'
39 2 'Structure model' '_entity.type'
40 2 'Structure model' '_struct_asym.entity_id'
41 3 'Structure model' '_atom_site.B_iso_or_equiv'
42 3 'Structure model' '_atom_site.Cartn_x'
43 3 'Structure model' '_atom_site.Cartn_y'
44 3 'Structure model' '_atom_site.Cartn_z'
45 3 'Structure model' '_atom_site.auth_asym_id'
46 3 'Structure model' '_atom_site_anisotrop.U[1][1]'
47 3 'Structure model' '_atom_site_anisotrop.U[1][2]'
48 3 'Structure model' '_atom_site_anisotrop.U[1][3]'
49 3 'Structure model' '_atom_site_anisotrop.U[2][2]'
50 3 'Structure model' '_atom_site_anisotrop.U[2][3]'
51 3 'Structure model' '_atom_site_anisotrop.U[3][3]'
52 3 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
53 3 'Structure model' '_chem_comp.pdbx_synonyms'
54 3 'Structure model' '_pdbx_branch_scheme.pdb_asym_id'
55 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
56 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
57 4 'Structure model' '_database_2.pdbx_DOI'
58 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x 13.1631
_pdbx_refine_tls.origin_y 0.6809
_pdbx_refine_tls.origin_z 6.5799
_pdbx_refine_tls.T[1][1] 0.0050
_pdbx_refine_tls.T[2][2] 0.0061
_pdbx_refine_tls.T[3][3] 0.0063
_pdbx_refine_tls.T[1][2] 0.0023
_pdbx_refine_tls.T[1][3] -0.0023
_pdbx_refine_tls.T[2][3] 0.0024
_pdbx_refine_tls.L[1][1] 0.8614
_pdbx_refine_tls.L[2][2] 1.1480
_pdbx_refine_tls.L[3][3] 1.4138
_pdbx_refine_tls.L[1][2] 0.2081
_pdbx_refine_tls.L[1][3] -0.2627
_pdbx_refine_tls.L[2][3] -0.5672
_pdbx_refine_tls.S[1][1] 0.0273
_pdbx_refine_tls.S[1][2] -0.0111
_pdbx_refine_tls.S[1][3] -0.0424
_pdbx_refine_tls.S[2][1] 0.0207
_pdbx_refine_tls.S[2][2] -0.0016
_pdbx_refine_tls.S[2][3] 0.0301
_pdbx_refine_tls.S[3][1] 0.0510
_pdbx_refine_tls.S[3][2] 0.0521
_pdbx_refine_tls.S[3][3] -0.0256
#
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id A
_pdbx_refine_tls_group.beg_auth_seq_id 114
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.end_auth_asym_id A
_pdbx_refine_tls_group.end_auth_seq_id 250
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.selection_details ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
'PROTEUM PLUS' 'data collection' PLUS ? 1
AMoRE phasing . ? 2
REFMAC refinement 5.6.0081 ? 3
SAINT 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ARG A 129 ? ? 80.29 7.92
2 1 ASN A 164 ? ? -150.24 80.99
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY 108 ? A GLY 1
2 1 Y 1 A ALA 109 ? A ALA 2
3 1 Y 1 A PRO 110 ? A PRO 3
4 1 Y 1 A ALA 111 ? A ALA 4
5 1 Y 1 A GLY 112 ? A GLY 5
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CL CL CL N N 74
CYS N N N N 75
CYS CA C N R 76
CYS C C N N 77
CYS O O N N 78
CYS CB C N N 79
CYS SG S N N 80
CYS OXT O N N 81
CYS H H N N 82
CYS H2 H N N 83
CYS HA H N N 84
CYS HB2 H N N 85
CYS HB3 H N N 86
CYS HG H N N 87
CYS HXT H N N 88
GAL C1 C N R 89
GAL C2 C N R 90
GAL C3 C N S 91
GAL C4 C N R 92
GAL C5 C N R 93
GAL C6 C N N 94
GAL O1 O N N 95
GAL O2 O N N 96
GAL O3 O N N 97
GAL O4 O N N 98
GAL O5 O N N 99
GAL O6 O N N 100
GAL H1 H N N 101
GAL H2 H N N 102
GAL H3 H N N 103
GAL H4 H N N 104
GAL H5 H N N 105
GAL H61 H N N 106
GAL H62 H N N 107
GAL HO1 H N N 108
GAL HO2 H N N 109
GAL HO3 H N N 110
GAL HO4 H N N 111
GAL HO6 H N N 112
GLN N N N N 113
GLN CA C N S 114
GLN C C N N 115
GLN O O N N 116
GLN CB C N N 117
GLN CG C N N 118
GLN CD C N N 119
GLN OE1 O N N 120
GLN NE2 N N N 121
GLN OXT O N N 122
GLN H H N N 123
GLN H2 H N N 124
GLN HA H N N 125
GLN HB2 H N N 126
GLN HB3 H N N 127
GLN HG2 H N N 128
GLN HG3 H N N 129
GLN HE21 H N N 130
GLN HE22 H N N 131
GLN HXT H N N 132
GLU N N N N 133
GLU CA C N S 134
GLU C C N N 135
GLU O O N N 136
GLU CB C N N 137
GLU CG C N N 138
GLU CD C N N 139
GLU OE1 O N N 140
GLU OE2 O N N 141
GLU OXT O N N 142
GLU H H N N 143
GLU H2 H N N 144
GLU HA H N N 145
GLU HB2 H N N 146
GLU HB3 H N N 147
GLU HG2 H N N 148
GLU HG3 H N N 149
GLU HE2 H N N 150
GLU HXT H N N 151
GLY N N N N 152
GLY CA C N N 153
GLY C C N N 154
GLY O O N N 155
GLY OXT O N N 156
GLY H H N N 157
GLY H2 H N N 158
GLY HA2 H N N 159
GLY HA3 H N N 160
GLY HXT H N N 161
HIS N N N N 162
HIS CA C N S 163
HIS C C N N 164
HIS O O N N 165
HIS CB C N N 166
HIS CG C Y N 167
HIS ND1 N Y N 168
HIS CD2 C Y N 169
HIS CE1 C Y N 170
HIS NE2 N Y N 171
HIS OXT O N N 172
HIS H H N N 173
HIS H2 H N N 174
HIS HA H N N 175
HIS HB2 H N N 176
HIS HB3 H N N 177
HIS HD1 H N N 178
HIS HD2 H N N 179
HIS HE1 H N N 180
HIS HE2 H N N 181
HIS HXT H N N 182
HOH O O N N 183
HOH H1 H N N 184
HOH H2 H N N 185
ILE N N N N 186
ILE CA C N S 187
ILE C C N N 188
ILE O O N N 189
ILE CB C N S 190
ILE CG1 C N N 191
ILE CG2 C N N 192
ILE CD1 C N N 193
ILE OXT O N N 194
ILE H H N N 195
ILE H2 H N N 196
ILE HA H N N 197
ILE HB H N N 198
ILE HG12 H N N 199
ILE HG13 H N N 200
ILE HG21 H N N 201
ILE HG22 H N N 202
ILE HG23 H N N 203
ILE HD11 H N N 204
ILE HD12 H N N 205
ILE HD13 H N N 206
ILE HXT H N N 207
LEU N N N N 208
LEU CA C N S 209
LEU C C N N 210
LEU O O N N 211
LEU CB C N N 212
LEU CG C N N 213
LEU CD1 C N N 214
LEU CD2 C N N 215
LEU OXT O N N 216
LEU H H N N 217
LEU H2 H N N 218
LEU HA H N N 219
LEU HB2 H N N 220
LEU HB3 H N N 221
LEU HG H N N 222
LEU HD11 H N N 223
LEU HD12 H N N 224
LEU HD13 H N N 225
LEU HD21 H N N 226
LEU HD22 H N N 227
LEU HD23 H N N 228
LEU HXT H N N 229
LYS N N N N 230
LYS CA C N S 231
LYS C C N N 232
LYS O O N N 233
LYS CB C N N 234
LYS CG C N N 235
LYS CD C N N 236
LYS CE C N N 237
LYS NZ N N N 238
LYS OXT O N N 239
LYS H H N N 240
LYS H2 H N N 241
LYS HA H N N 242
LYS HB2 H N N 243
LYS HB3 H N N 244
LYS HG2 H N N 245
LYS HG3 H N N 246
LYS HD2 H N N 247
LYS HD3 H N N 248
LYS HE2 H N N 249
LYS HE3 H N N 250
LYS HZ1 H N N 251
LYS HZ2 H N N 252
LYS HZ3 H N N 253
LYS HXT H N N 254
MET N N N N 255
MET CA C N S 256
MET C C N N 257
MET O O N N 258
MET CB C N N 259
MET CG C N N 260
MET SD S N N 261
MET CE C N N 262
MET OXT O N N 263
MET H H N N 264
MET H2 H N N 265
MET HA H N N 266
MET HB2 H N N 267
MET HB3 H N N 268
MET HG2 H N N 269
MET HG3 H N N 270
MET HE1 H N N 271
MET HE2 H N N 272
MET HE3 H N N 273
MET HXT H N N 274
PHE N N N N 275
PHE CA C N S 276
PHE C C N N 277
PHE O O N N 278
PHE CB C N N 279
PHE CG C Y N 280
PHE CD1 C Y N 281
PHE CD2 C Y N 282
PHE CE1 C Y N 283
PHE CE2 C Y N 284
PHE CZ C Y N 285
PHE OXT O N N 286
PHE H H N N 287
PHE H2 H N N 288
PHE HA H N N 289
PHE HB2 H N N 290
PHE HB3 H N N 291
PHE HD1 H N N 292
PHE HD2 H N N 293
PHE HE1 H N N 294
PHE HE2 H N N 295
PHE HZ H N N 296
PHE HXT H N N 297
PRO N N N N 298
PRO CA C N S 299
PRO C C N N 300
PRO O O N N 301
PRO CB C N N 302
PRO CG C N N 303
PRO CD C N N 304
PRO OXT O N N 305
PRO H H N N 306
PRO HA H N N 307
PRO HB2 H N N 308
PRO HB3 H N N 309
PRO HG2 H N N 310
PRO HG3 H N N 311
PRO HD2 H N N 312
PRO HD3 H N N 313
PRO HXT H N N 314
SER N N N N 315
SER CA C N S 316
SER C C N N 317
SER O O N N 318
SER CB C N N 319
SER OG O N N 320
SER OXT O N N 321
SER H H N N 322
SER H2 H N N 323
SER HA H N N 324
SER HB2 H N N 325
SER HB3 H N N 326
SER HG H N N 327
SER HXT H N N 328
THR N N N N 329
THR CA C N S 330
THR C C N N 331
THR O O N N 332
THR CB C N R 333
THR OG1 O N N 334
THR CG2 C N N 335
THR OXT O N N 336
THR H H N N 337
THR H2 H N N 338
THR HA H N N 339
THR HB H N N 340
THR HG1 H N N 341
THR HG21 H N N 342
THR HG22 H N N 343
THR HG23 H N N 344
THR HXT H N N 345
TRP N N N N 346
TRP CA C N S 347
TRP C C N N 348
TRP O O N N 349
TRP CB C N N 350
TRP CG C Y N 351
TRP CD1 C Y N 352
TRP CD2 C Y N 353
TRP NE1 N Y N 354
TRP CE2 C Y N 355
TRP CE3 C Y N 356
TRP CZ2 C Y N 357
TRP CZ3 C Y N 358
TRP CH2 C Y N 359
TRP OXT O N N 360
TRP H H N N 361
TRP H2 H N N 362
TRP HA H N N 363
TRP HB2 H N N 364
TRP HB3 H N N 365
TRP HD1 H N N 366
TRP HE1 H N N 367
TRP HE3 H N N 368
TRP HZ2 H N N 369
TRP HZ3 H N N 370
TRP HH2 H N N 371
TRP HXT H N N 372
TYR N N N N 373
TYR CA C N S 374
TYR C C N N 375
TYR O O N N 376
TYR CB C N N 377
TYR CG C Y N 378
TYR CD1 C Y N 379
TYR CD2 C Y N 380
TYR CE1 C Y N 381
TYR CE2 C Y N 382
TYR CZ C Y N 383
TYR OH O N N 384
TYR OXT O N N 385
TYR H H N N 386
TYR H2 H N N 387
TYR HA H N N 388
TYR HB2 H N N 389
TYR HB3 H N N 390
TYR HD1 H N N 391
TYR HD2 H N N 392
TYR HE1 H N N 393
TYR HE2 H N N 394
TYR HH H N N 395
TYR HXT H N N 396
VAL N N N N 397
VAL CA C N S 398
VAL C C N N 399
VAL O O N N 400
VAL CB C N N 401
VAL CG1 C N N 402
VAL CG2 C N N 403
VAL OXT O N N 404
VAL H H N N 405
VAL H2 H N N 406
VAL HA H N N 407
VAL HB H N N 408
VAL HG11 H N N 409
VAL HG12 H N N 410
VAL HG13 H N N 411
VAL HG21 H N N 412
VAL HG22 H N N 413
VAL HG23 H N N 414
VAL HXT H N N 415
YIO C1 C N S 416
YIO C2 C N R 417
YIO C3 C N S 418
YIO C4 C N R 419
YIO C5 C N R 420
YIO C6 C N N 421
YIO O2 O N N 422
YIO O3 O N N 423
YIO O4 O N N 424
YIO O5 O N N 425
YIO O6 O N N 426
YIO S1 S N N 427
YIO H1 H N N 428
YIO H2 H N N 429
YIO H3 H N N 430
YIO HO2 H N N 431
YIO H4 H N N 432
YIO HO3 H N N 433
YIO H5 H N N 434
YIO HO4 H N N 435
YIO H61 H N N 436
YIO H62 H N N 437
YIO HO6 H N N 438
YIO HS1 H N N 439
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GAL C1 C2 sing N N 83
GAL C1 O1 sing N N 84
GAL C1 O5 sing N N 85
GAL C1 H1 sing N N 86
GAL C2 C3 sing N N 87
GAL C2 O2 sing N N 88
GAL C2 H2 sing N N 89
GAL C3 C4 sing N N 90
GAL C3 O3 sing N N 91
GAL C3 H3 sing N N 92
GAL C4 C5 sing N N 93
GAL C4 O4 sing N N 94
GAL C4 H4 sing N N 95
GAL C5 C6 sing N N 96
GAL C5 O5 sing N N 97
GAL C5 H5 sing N N 98
GAL C6 O6 sing N N 99
GAL C6 H61 sing N N 100
GAL C6 H62 sing N N 101
GAL O1 HO1 sing N N 102
GAL O2 HO2 sing N N 103
GAL O3 HO3 sing N N 104
GAL O4 HO4 sing N N 105
GAL O6 HO6 sing N N 106
GLN N CA sing N N 107
GLN N H sing N N 108
GLN N H2 sing N N 109
GLN CA C sing N N 110
GLN CA CB sing N N 111
GLN CA HA sing N N 112
GLN C O doub N N 113
GLN C OXT sing N N 114
GLN CB CG sing N N 115
GLN CB HB2 sing N N 116
GLN CB HB3 sing N N 117
GLN CG CD sing N N 118
GLN CG HG2 sing N N 119
GLN CG HG3 sing N N 120
GLN CD OE1 doub N N 121
GLN CD NE2 sing N N 122
GLN NE2 HE21 sing N N 123
GLN NE2 HE22 sing N N 124
GLN OXT HXT sing N N 125
GLU N CA sing N N 126
GLU N H sing N N 127
GLU N H2 sing N N 128
GLU CA C sing N N 129
GLU CA CB sing N N 130
GLU CA HA sing N N 131
GLU C O doub N N 132
GLU C OXT sing N N 133
GLU CB CG sing N N 134
GLU CB HB2 sing N N 135
GLU CB HB3 sing N N 136
GLU CG CD sing N N 137
GLU CG HG2 sing N N 138
GLU CG HG3 sing N N 139
GLU CD OE1 doub N N 140
GLU CD OE2 sing N N 141
GLU OE2 HE2 sing N N 142
GLU OXT HXT sing N N 143
GLY N CA sing N N 144
GLY N H sing N N 145
GLY N H2 sing N N 146
GLY CA C sing N N 147
GLY CA HA2 sing N N 148
GLY CA HA3 sing N N 149
GLY C O doub N N 150
GLY C OXT sing N N 151
GLY OXT HXT sing N N 152
HIS N CA sing N N 153
HIS N H sing N N 154
HIS N H2 sing N N 155
HIS CA C sing N N 156
HIS CA CB sing N N 157
HIS CA HA sing N N 158
HIS C O doub N N 159
HIS C OXT sing N N 160
HIS CB CG sing N N 161
HIS CB HB2 sing N N 162
HIS CB HB3 sing N N 163
HIS CG ND1 sing Y N 164
HIS CG CD2 doub Y N 165
HIS ND1 CE1 doub Y N 166
HIS ND1 HD1 sing N N 167
HIS CD2 NE2 sing Y N 168
HIS CD2 HD2 sing N N 169
HIS CE1 NE2 sing Y N 170
HIS CE1 HE1 sing N N 171
HIS NE2 HE2 sing N N 172
HIS OXT HXT sing N N 173
HOH O H1 sing N N 174
HOH O H2 sing N N 175
ILE N CA sing N N 176
ILE N H sing N N 177
ILE N H2 sing N N 178
ILE CA C sing N N 179
ILE CA CB sing N N 180
ILE CA HA sing N N 181
ILE C O doub N N 182
ILE C OXT sing N N 183
ILE CB CG1 sing N N 184
ILE CB CG2 sing N N 185
ILE CB HB sing N N 186
ILE CG1 CD1 sing N N 187
ILE CG1 HG12 sing N N 188
ILE CG1 HG13 sing N N 189
ILE CG2 HG21 sing N N 190
ILE CG2 HG22 sing N N 191
ILE CG2 HG23 sing N N 192
ILE CD1 HD11 sing N N 193
ILE CD1 HD12 sing N N 194
ILE CD1 HD13 sing N N 195
ILE OXT HXT sing N N 196
LEU N CA sing N N 197
LEU N H sing N N 198
LEU N H2 sing N N 199
LEU CA C sing N N 200
LEU CA CB sing N N 201
LEU CA HA sing N N 202
LEU C O doub N N 203
LEU C OXT sing N N 204
LEU CB CG sing N N 205
LEU CB HB2 sing N N 206
LEU CB HB3 sing N N 207
LEU CG CD1 sing N N 208
LEU CG CD2 sing N N 209
LEU CG HG sing N N 210
LEU CD1 HD11 sing N N 211
LEU CD1 HD12 sing N N 212
LEU CD1 HD13 sing N N 213
LEU CD2 HD21 sing N N 214
LEU CD2 HD22 sing N N 215
LEU CD2 HD23 sing N N 216
LEU OXT HXT sing N N 217
LYS N CA sing N N 218
LYS N H sing N N 219
LYS N H2 sing N N 220
LYS CA C sing N N 221
LYS CA CB sing N N 222
LYS CA HA sing N N 223
LYS C O doub N N 224
LYS C OXT sing N N 225
LYS CB CG sing N N 226
LYS CB HB2 sing N N 227
LYS CB HB3 sing N N 228
LYS CG CD sing N N 229
LYS CG HG2 sing N N 230
LYS CG HG3 sing N N 231
LYS CD CE sing N N 232
LYS CD HD2 sing N N 233
LYS CD HD3 sing N N 234
LYS CE NZ sing N N 235
LYS CE HE2 sing N N 236
LYS CE HE3 sing N N 237
LYS NZ HZ1 sing N N 238
LYS NZ HZ2 sing N N 239
LYS NZ HZ3 sing N N 240
LYS OXT HXT sing N N 241
MET N CA sing N N 242
MET N H sing N N 243
MET N H2 sing N N 244
MET CA C sing N N 245
MET CA CB sing N N 246
MET CA HA sing N N 247
MET C O doub N N 248
MET C OXT sing N N 249
MET CB CG sing N N 250
MET CB HB2 sing N N 251
MET CB HB3 sing N N 252
MET CG SD sing N N 253
MET CG HG2 sing N N 254
MET CG HG3 sing N N 255
MET SD CE sing N N 256
MET CE HE1 sing N N 257
MET CE HE2 sing N N 258
MET CE HE3 sing N N 259
MET OXT HXT sing N N 260
PHE N CA sing N N 261
PHE N H sing N N 262
PHE N H2 sing N N 263
PHE CA C sing N N 264
PHE CA CB sing N N 265
PHE CA HA sing N N 266
PHE C O doub N N 267
PHE C OXT sing N N 268
PHE CB CG sing N N 269
PHE CB HB2 sing N N 270
PHE CB HB3 sing N N 271
PHE CG CD1 doub Y N 272
PHE CG CD2 sing Y N 273
PHE CD1 CE1 sing Y N 274
PHE CD1 HD1 sing N N 275
PHE CD2 CE2 doub Y N 276
PHE CD2 HD2 sing N N 277
PHE CE1 CZ doub Y N 278
PHE CE1 HE1 sing N N 279
PHE CE2 CZ sing Y N 280
PHE CE2 HE2 sing N N 281
PHE CZ HZ sing N N 282
PHE OXT HXT sing N N 283
PRO N CA sing N N 284
PRO N CD sing N N 285
PRO N H sing N N 286
PRO CA C sing N N 287
PRO CA CB sing N N 288
PRO CA HA sing N N 289
PRO C O doub N N 290
PRO C OXT sing N N 291
PRO CB CG sing N N 292
PRO CB HB2 sing N N 293
PRO CB HB3 sing N N 294
PRO CG CD sing N N 295
PRO CG HG2 sing N N 296
PRO CG HG3 sing N N 297
PRO CD HD2 sing N N 298
PRO CD HD3 sing N N 299
PRO OXT HXT sing N N 300
SER N CA sing N N 301
SER N H sing N N 302
SER N H2 sing N N 303
SER CA C sing N N 304
SER CA CB sing N N 305
SER CA HA sing N N 306
SER C O doub N N 307
SER C OXT sing N N 308
SER CB OG sing N N 309
SER CB HB2 sing N N 310
SER CB HB3 sing N N 311
SER OG HG sing N N 312
SER OXT HXT sing N N 313
THR N CA sing N N 314
THR N H sing N N 315
THR N H2 sing N N 316
THR CA C sing N N 317
THR CA CB sing N N 318
THR CA HA sing N N 319
THR C O doub N N 320
THR C OXT sing N N 321
THR CB OG1 sing N N 322
THR CB CG2 sing N N 323
THR CB HB sing N N 324
THR OG1 HG1 sing N N 325
THR CG2 HG21 sing N N 326
THR CG2 HG22 sing N N 327
THR CG2 HG23 sing N N 328
THR OXT HXT sing N N 329
TRP N CA sing N N 330
TRP N H sing N N 331
TRP N H2 sing N N 332
TRP CA C sing N N 333
TRP CA CB sing N N 334
TRP CA HA sing N N 335
TRP C O doub N N 336
TRP C OXT sing N N 337
TRP CB CG sing N N 338
TRP CB HB2 sing N N 339
TRP CB HB3 sing N N 340
TRP CG CD1 doub Y N 341
TRP CG CD2 sing Y N 342
TRP CD1 NE1 sing Y N 343
TRP CD1 HD1 sing N N 344
TRP CD2 CE2 doub Y N 345
TRP CD2 CE3 sing Y N 346
TRP NE1 CE2 sing Y N 347
TRP NE1 HE1 sing N N 348
TRP CE2 CZ2 sing Y N 349
TRP CE3 CZ3 doub Y N 350
TRP CE3 HE3 sing N N 351
TRP CZ2 CH2 doub Y N 352
TRP CZ2 HZ2 sing N N 353
TRP CZ3 CH2 sing Y N 354
TRP CZ3 HZ3 sing N N 355
TRP CH2 HH2 sing N N 356
TRP OXT HXT sing N N 357
TYR N CA sing N N 358
TYR N H sing N N 359
TYR N H2 sing N N 360
TYR CA C sing N N 361
TYR CA CB sing N N 362
TYR CA HA sing N N 363
TYR C O doub N N 364
TYR C OXT sing N N 365
TYR CB CG sing N N 366
TYR CB HB2 sing N N 367
TYR CB HB3 sing N N 368
TYR CG CD1 doub Y N 369
TYR CG CD2 sing Y N 370
TYR CD1 CE1 sing Y N 371
TYR CD1 HD1 sing N N 372
TYR CD2 CE2 doub Y N 373
TYR CD2 HD2 sing N N 374
TYR CE1 CZ doub Y N 375
TYR CE1 HE1 sing N N 376
TYR CE2 CZ sing Y N 377
TYR CE2 HE2 sing N N 378
TYR CZ OH sing N N 379
TYR OH HH sing N N 380
TYR OXT HXT sing N N 381
VAL N CA sing N N 382
VAL N H sing N N 383
VAL N H2 sing N N 384
VAL CA C sing N N 385
VAL CA CB sing N N 386
VAL CA HA sing N N 387
VAL C O doub N N 388
VAL C OXT sing N N 389
VAL CB CG1 sing N N 390
VAL CB CG2 sing N N 391
VAL CB HB sing N N 392
VAL CG1 HG11 sing N N 393
VAL CG1 HG12 sing N N 394
VAL CG1 HG13 sing N N 395
VAL CG2 HG21 sing N N 396
VAL CG2 HG22 sing N N 397
VAL CG2 HG23 sing N N 398
VAL OXT HXT sing N N 399
YIO C1 C2 sing N N 400
YIO C1 O5 sing N N 401
YIO C1 S1 sing N N 402
YIO C2 C3 sing N N 403
YIO C2 O2 sing N N 404
YIO C3 C4 sing N N 405
YIO C3 O3 sing N N 406
YIO C4 C5 sing N N 407
YIO C4 O4 sing N N 408
YIO C5 C6 sing N N 409
YIO C5 O5 sing N N 410
YIO C6 O6 sing N N 411
YIO C1 H1 sing N N 412
YIO C2 H2 sing N N 413
YIO C3 H3 sing N N 414
YIO O2 HO2 sing N N 415
YIO C4 H4 sing N N 416
YIO O3 HO3 sing N N 417
YIO C5 H5 sing N N 418
YIO O4 HO4 sing N N 419
YIO C6 H61 sing N N 420
YIO C6 H62 sing N N 421
YIO S1 HS1 sing N N 422
YIO O6 HO6 sing N N 423
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 YIO 1 C YIO 1 H TDG 1 n
B 2 GAL 2 C GAL 2 H TDG 1 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
YIO 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp1SH
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'WURCS=2.0/1,2,1/[a2112h-1b_1-5]/1-1/a1-b1*S*' WURCS PDB2Glycan 1.1.0
2 2 '[][b-D-Galp1SH]{[(1+S)][b-D-Galp]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 GAL
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 YIO
_pdbx_entity_branch_link.atom_id_2 S1
_pdbx_entity_branch_link.leaving_atom_id_2 HS1
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 YIO 1 n
2 GAL 2 n
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'CHLORIDE ION' CL
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1A3K
_pdbx_initial_refinement_model.details 'pdb entry 1A3K'
#