HEADER TRANSFERASE 22-FEB-13 4JD0 TITLE STRUCTURE OF THE INOSITOL-1-PHOSPHATE CTP TRANSFERASE FROM T. TITLE 2 MARITIMA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: THEMADRAFT_0946, TM1418A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA MOTIF OF SUGAR NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.STEC REVDAT 2 20-SEP-23 4JD0 1 REMARK SEQADV LINK REVDAT 1 18-SEP-13 4JD0 0 JRNL AUTH O.V.KURNASOV,H.J.LUK,M.F.ROBERTS,B.STEC JRNL TITL STRUCTURE OF THE INOSITOL-1-PHOSPHATE CYTIDYLYLTRANSFERASE JRNL TITL 2 FROM THERMOTOGA MARITIMA. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1808 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23999304 JRNL DOI 10.1107/S0907444913015278 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 115.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 36573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.114 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.877 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2241 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3078 ; 2.354 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 6.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;29.757 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;15.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.153 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1685 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2241 ; 8.052 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 89 ;46.379 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2330 ;28.252 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4JD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CONFOCAL MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 115.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2QQX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 2.0 M AMMONIUM PHOSPHATE AND 100 REMARK 280 MM LICL BUFFERED AT PH 8.5 WITH 100 MM TRIS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.91000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.45500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.45500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 180 O HOH A 549 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 193 CG HIS A 193 CD2 0.078 REMARK 500 TRP A 215 CE2 TRP A 215 CD2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 209 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 149 -115.35 58.64 REMARK 500 GLU A 149 -113.23 55.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 99 OE2 REMARK 620 2 HOH A 421 O 130.9 REMARK 620 3 HOH A 529 O 92.8 119.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 315 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD2 REMARK 620 2 HOH A 475 O 99.0 REMARK 620 3 HOH A 523 O 121.4 67.1 REMARK 620 4 HOH A 550 O 111.2 143.3 110.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 131 OG REMARK 620 2 GLY A 211 O 101.0 REMARK 620 3 ALA A 213 O 122.9 119.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 190 OG REMARK 620 2 1KH A 301 O3 115.2 REMARK 620 3 1KH A 301 O2 60.6 60.0 REMARK 620 4 HOH A 498 O 92.6 135.4 151.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 190 OG REMARK 620 2 TYR A 192 OH 84.8 REMARK 620 3 HOH A 419 O 88.1 167.1 REMARK 620 4 HOH A 546 O 84.6 86.3 82.3 REMARK 620 5 HOH A 631 O 121.8 87.4 105.5 152.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 200 OD2 REMARK 620 2 PO4 A 305 O3 91.6 REMARK 620 3 PO4 A 305 O1 99.0 52.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 418 O REMARK 620 2 HOH A 468 O 75.9 REMARK 620 3 HOH A 482 O 148.3 90.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1KH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 315 DBREF 4JD0 A 1 241 UNP G4FFF4 G4FFF4_THEMA 1 241 SEQADV 4JD0 HIS A -9 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 HIS A -8 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 HIS A -7 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 HIS A -6 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 HIS A -5 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 HIS A -4 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 PHE A -3 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 GLN A -2 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 GLY A -1 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 ALA A 0 UNP G4FFF4 EXPRESSION TAG SEQADV 4JD0 SER A 113 UNP G4FFF4 GLU 113 CONFLICT SEQADV 4JD0 LYS A 141 UNP G4FFF4 GLU 141 CONFLICT SEQADV 4JD0 ASN A 150 UNP G4FFF4 ASP 150 CONFLICT SEQADV 4JD0 GLN A 161 UNP G4FFF4 GLU 161 CONFLICT SEQADV 4JD0 ASP A 188 UNP G4FFF4 GLU 188 CONFLICT SEQADV 4JD0 ALA A 222 UNP G4FFF4 GLU 222 CONFLICT SEQADV 4JD0 SER A 226 UNP G4FFF4 GLU 226 CONFLICT SEQADV 4JD0 SER A 233 UNP G4FFF4 LYS 233 CONFLICT SEQRES 1 A 251 HIS HIS HIS HIS HIS HIS PHE GLN GLY ALA MET ARG GLU SEQRES 2 A 251 ALA ILE VAL LEU ALA SER GLY ALA GLY LYS ARG LEU ARG SEQRES 3 A 251 SER VAL THR GLY ASP VAL PRO LYS VAL PHE TYR ARG PHE SEQRES 4 A 251 ASP GLY CYS GLU LEU VAL LYS TYR PRO MET ILE SER LEU SEQRES 5 A 251 MET LYS ASN GLY VAL GLU ARG PHE VAL LEU VAL VAL SER SEQRES 6 A 251 GLU GLY TYR ARG ASP LEU GLY GLU LYS VAL LEU ASN ASP SEQRES 7 A 251 LEU GLY VAL GLU GLY ILE VAL VAL GLU ASN LYS LYS VAL SEQRES 8 A 251 GLU LEU GLY ASN ALA TYR SER PHE PHE LEU SER GLU PRO SEQRES 9 A 251 TYR VAL GLU SER GLU LYS PHE PHE LEU SER CYS GLY ASP SEQRES 10 A 251 SER LEU PHE PRO PRO SER ALA LEU LYS SER ALA PHE SER SEQRES 11 A 251 GLU ASP GLU PHE HIS ILE LYS LEU GLY VAL SER LYS ARG SEQRES 12 A 251 SER ASP LEU ILE ASP PRO GLU LYS ALA SER LYS VAL LEU SEQRES 13 A 251 VAL ASN GLU ASN ARG ILE VAL LYS ILE GLY LYS ARG ILE SEQRES 14 A 251 ASP GLN TYR ASN TYR PHE ASP THR GLY VAL PHE VAL MET SEQRES 15 A 251 THR LYS LYS VAL TYR SER LEU LYS GLU SER PHE SER TRP SEQRES 16 A 251 THR GLU ASP ILE SER LEU TYR HIS VAL LEU GLN LYS ALA SEQRES 17 A 251 VAL ASP THR GLY MET ILE VAL LYS VAL PHE ASP PHE GLY SEQRES 18 A 251 ASN ALA LEU TRP THR GLU ILE ASP SER PRO ALA ASP LEU SEQRES 19 A 251 ASN SER LYS VAL TYR GLU LEU MET SER LYS ILE LYS GLU SEQRES 20 A 251 GLY VAL ALA CYS HET 1KH A 301 14 HET CL A 302 1 HET NA A 303 1 HET PO4 A 304 5 HET PO4 A 305 5 HET PO4 A 306 5 HET NA A 307 1 HET NA A 308 1 HET NA A 309 1 HET NA A 310 1 HET NA A 311 1 HET NA A 312 1 HET GOL A 313 6 HET GOL A 314 6 HET NA A 315 1 HETNAM 1KH ARSENORIBOSE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 1KH C5 H13 AS O8 FORMUL 3 CL CL 1- FORMUL 4 NA 8(NA 1+) FORMUL 5 PO4 3(O4 P 3-) FORMUL 14 GOL 2(C3 H8 O3) FORMUL 17 HOH *240(H2 O) HELIX 1 1 GLY A 12 ARG A 14 5 3 HELIX 2 2 LEU A 15 GLY A 20 1 6 HELIX 3 3 PRO A 23 PHE A 26 5 4 HELIX 4 4 VAL A 35 LYS A 44 1 10 HELIX 5 5 TYR A 58 GLY A 70 1 13 HELIX 6 6 LYS A 80 LEU A 83 5 4 HELIX 7 7 GLY A 84 SER A 92 1 9 HELIX 8 8 GLU A 93 VAL A 96 5 4 HELIX 9 9 PRO A 111 PHE A 119 5 9 HELIX 10 10 LYS A 175 PHE A 183 5 9 HELIX 11 11 SER A 190 THR A 201 1 12 HELIX 12 12 SER A 220 LEU A 224 5 5 HELIX 13 13 ASN A 225 LYS A 236 1 12 SHEET 1 A10 GLU A 72 ASN A 78 0 SHEET 2 A10 ARG A 49 SER A 55 1 N VAL A 54 O ASN A 78 SHEET 3 A10 GLU A 3 ALA A 8 1 N ALA A 8 O VAL A 53 SHEET 4 A10 LYS A 100 CYS A 105 1 O PHE A 102 N ILE A 5 SHEET 5 A10 TYR A 164 THR A 173 -1 O MET A 172 N PHE A 101 SHEET 6 A10 LYS A 144 ASN A 148 -1 N VAL A 145 O TYR A 164 SHEET 7 A10 ARG A 151 GLY A 156 -1 O VAL A 153 N LEU A 146 SHEET 8 A10 VAL A 205 ASP A 209 -1 O VAL A 205 N ILE A 152 SHEET 9 A10 ILE A 126 SER A 131 1 N ILE A 126 O LYS A 206 SHEET 10 A10 TYR A 164 THR A 173 -1 O VAL A 169 N GLY A 129 SHEET 1 B 2 ARG A 28 PHE A 29 0 SHEET 2 B 2 CYS A 32 GLU A 33 -1 O CYS A 32 N PHE A 29 SHEET 1 C 2 SER A 108 LEU A 109 0 SHEET 2 C 2 THR A 216 GLU A 217 -1 O THR A 216 N LEU A 109 SSBOND 1 CYS A 32 CYS A 241 1555 1555 2.07 LINK OE2 GLU A 99 NA NA A 309 1555 1555 2.52 LINK OD2 ASP A 107 NA NA A 315 1555 1555 2.48 LINK OG SER A 131 NA NA A 308 1555 1555 2.65 LINK OD2 ASP A 166 NA B NA A 303 1555 1555 2.43 LINK OG ASER A 190 NA NA A 311 1555 1555 2.99 LINK OG BSER A 190 NA NA A 312 1555 1555 2.84 LINK OH TYR A 192 NA NA A 312 1555 1555 3.17 LINK OD2 ASP A 200 NA NA A 307 1555 1555 2.28 LINK O GLY A 211 NA NA A 308 1555 1555 2.69 LINK O ALA A 213 NA NA A 308 1555 1555 2.62 LINK O3 A1KH A 301 NA NA A 311 1555 1555 2.56 LINK O2 A1KH A 301 NA NA A 311 1555 1555 2.74 LINK O3 PO4 A 305 NA NA A 307 1555 1555 2.44 LINK O1 PO4 A 305 NA NA A 307 1555 1555 3.16 LINK NA NA A 309 O HOH A 421 1555 1555 2.17 LINK NA NA A 309 O HOH A 529 1555 1555 2.85 LINK NA NA A 310 O HOH A 418 1555 1555 2.25 LINK NA NA A 310 O HOH A 468 1555 1555 2.46 LINK NA NA A 310 O HOH A 482 1555 1555 2.51 LINK NA NA A 311 O HOH A 498 1555 1555 2.37 LINK NA NA A 312 O HOH A 419 1555 1555 2.07 LINK NA NA A 312 O HOH A 546 1555 1555 2.24 LINK NA NA A 312 O HOH A 631 1555 1555 2.68 LINK NA NA A 315 O HOH A 475 1555 1555 2.01 LINK NA NA A 315 O HOH A 523 1555 1555 2.48 LINK NA NA A 315 O HOH A 550 1555 1555 2.55 SITE 1 AC1 16 ASN A 85 CYS A 105 LYS A 141 SER A 143 SITE 2 AC1 16 LYS A 157 ASP A 166 GLY A 168 PHE A 170 SITE 3 AC1 16 SER A 190 LEU A 191 TYR A 192 GLU A 217 SITE 4 AC1 16 NA A 311 HOH A 420 HOH A 455 HOH A 576 SITE 1 AC2 4 SER A 190 LEU A 191 TYR A 192 NA A 303 SITE 1 AC3 5 ASP A 166 PHE A 170 LEU A 191 TYR A 192 SITE 2 AC3 5 CL A 302 SITE 1 AC4 8 SER A 120 ASP A 122 LYS A 127 ASN A 150 SITE 2 AC4 8 VAL A 207 PHE A 208 HOH A 526 HOH A 623 SITE 1 AC5 10 ARG A 133 ASP A 135 HIS A 193 GLN A 196 SITE 2 AC5 10 LYS A 197 ASP A 200 LYS A 227 NA A 307 SITE 3 AC5 10 GOL A 313 HOH A 481 SITE 1 AC6 5 GLY A 156 LYS A 157 ARG A 158 TYR A 192 SITE 2 AC6 5 HOH A 521 SITE 1 AC7 5 ARG A 133 ASP A 135 LYS A 197 ASP A 200 SITE 2 AC7 5 PO4 A 305 SITE 1 AC8 6 SER A 131 ARG A 133 PHE A 210 GLY A 211 SITE 2 AC8 6 ALA A 213 TRP A 215 SITE 1 AC9 4 GLU A 99 LYS A 175 HOH A 421 HOH A 529 SITE 1 BC1 4 ASN A 163 HOH A 418 HOH A 468 HOH A 482 SITE 1 BC2 3 SER A 190 1KH A 301 HOH A 498 SITE 1 BC3 5 SER A 190 TYR A 192 HOH A 419 HOH A 546 SITE 2 BC3 5 HOH A 631 SITE 1 BC4 9 PHE A 183 SER A 184 GLU A 187 ILE A 189 SITE 2 BC4 9 HIS A 193 LYS A 197 LYS A 227 PO4 A 305 SITE 3 BC4 9 HOH A 594 SITE 1 BC5 10 LEU A 7 SER A 9 GLY A 10 VAL A 25 SITE 2 BC5 10 ASN A 85 CYS A 105 GLY A 106 ASP A 107 SITE 3 BC5 10 HOH A 408 HOH A 437 SITE 1 BC6 5 ASP A 107 ASP A 219 HOH A 475 HOH A 523 SITE 2 BC6 5 HOH A 550 CRYST1 133.090 133.090 43.365 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007514 0.004338 0.000000 0.00000 SCALE2 0.000000 0.008676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023060 0.00000