HEADER CELL ADHESION 25-FEB-13 4JE0 TITLE STRUCTURES OF SDRD FROM STAPHYLOCOCCUS AUREUS REVEAL THE MOLECULAR TITLE 2 MECHANISM OF HOW THE CELL SURFACE RECEPTORS RECOGNIZE THEIR LIGANDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SER-ASP RICH FIBRINOGEN/BONE SIALOPROTEIN-BINDING PROTEIN COMPND 3 SDRD; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 235-545; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 548473; SOURCE 4 STRAIN: TCH60; SOURCE 5 GENE: HMPREF0772_12627, SDRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RECEPTOR, SURFACE, MSCRAMM, STAPHYLOCOCCUS AUREUS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,J.GE,M.YANG REVDAT 2 04-DEC-19 4JE0 1 REMARK SEQADV LINK REVDAT 1 19-JUN-13 4JE0 0 JRNL AUTH X.WANG,J.GE,B.LIU,Y.HU,M.YANG JRNL TITL STRUCTURES OF SDRD FROM STAPHYLOCOCCUS AUREUS REVEAL THE JRNL TITL 2 MOLECULAR MECHANISM OF HOW THE CELL SURFACE RECEPTORS JRNL TITL 3 RECOGNIZE THEIR LIGANDS JRNL REF PROTEIN CELL V. 4 277 2013 JRNL REFN ISSN 1674-800X JRNL PMID 23549613 JRNL DOI 10.1007/S13238-013-3009-X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 85743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.4458 - 5.2743 0.90 2643 124 0.1827 0.2159 REMARK 3 2 5.2743 - 4.1895 0.98 2805 156 0.1518 0.1618 REMARK 3 3 4.1895 - 3.6608 0.98 2747 157 0.1796 0.2146 REMARK 3 4 3.6608 - 3.3265 0.98 2799 141 0.1935 0.2535 REMARK 3 5 3.3265 - 3.0883 0.98 2766 159 0.2173 0.2204 REMARK 3 6 3.0883 - 2.9064 0.98 2773 126 0.2238 0.2963 REMARK 3 7 2.9064 - 2.7609 0.98 2779 150 0.2326 0.3025 REMARK 3 8 2.7609 - 2.6408 0.98 2786 120 0.2228 0.2740 REMARK 3 9 2.6408 - 2.5392 0.98 2746 139 0.2207 0.2830 REMARK 3 10 2.5392 - 2.4516 0.98 2773 134 0.2232 0.2451 REMARK 3 11 2.4516 - 2.3749 0.97 2731 156 0.2271 0.2765 REMARK 3 12 2.3749 - 2.3071 0.98 2709 163 0.2326 0.2720 REMARK 3 13 2.3071 - 2.2464 0.97 2683 147 0.2487 0.2978 REMARK 3 14 2.2464 - 2.1916 0.96 2732 134 0.2501 0.3155 REMARK 3 15 2.1916 - 2.1418 0.97 2714 149 0.2143 0.2282 REMARK 3 16 2.1418 - 2.0962 0.97 2735 144 0.2188 0.2518 REMARK 3 17 2.0962 - 2.0543 0.97 2736 132 0.2158 0.2807 REMARK 3 18 2.0543 - 2.0155 0.96 2665 138 0.2241 0.2499 REMARK 3 19 2.0155 - 1.9795 0.97 2767 118 0.2216 0.2792 REMARK 3 20 1.9795 - 1.9460 0.96 2686 126 0.2321 0.2632 REMARK 3 21 1.9460 - 1.9146 0.96 2670 150 0.3107 0.3543 REMARK 3 22 1.9146 - 1.8851 0.95 2662 148 0.3220 0.3672 REMARK 3 23 1.8851 - 1.8574 0.96 2702 129 0.2377 0.2803 REMARK 3 24 1.8574 - 1.8313 0.96 2653 151 0.2289 0.2805 REMARK 3 25 1.8313 - 1.8065 0.96 2660 153 0.2399 0.2628 REMARK 3 26 1.8065 - 1.7830 0.96 2678 167 0.2413 0.2917 REMARK 3 27 1.7830 - 1.7608 0.96 2690 133 0.2564 0.3316 REMARK 3 28 1.7608 - 1.7395 0.95 2661 149 0.2817 0.3081 REMARK 3 29 1.7395 - 1.7193 0.95 2625 147 0.2806 0.3204 REMARK 3 30 1.7193 - 1.7000 0.95 2678 149 0.3089 0.3597 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4934 REMARK 3 ANGLE : 1.100 6727 REMARK 3 CHIRALITY : 0.079 785 REMARK 3 PLANARITY : 0.004 884 REMARK 3 DIHEDRAL : 13.251 1785 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -6.2467 21.0587 73.3164 REMARK 3 T TENSOR REMARK 3 T11: 0.1971 T22: 0.2732 REMARK 3 T33: 0.1682 T12: 0.1293 REMARK 3 T13: -0.0150 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: -0.0628 L22: 0.1871 REMARK 3 L33: 0.3828 L12: -0.0413 REMARK 3 L13: -0.1905 L23: -0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: 0.0151 S13: -0.0313 REMARK 3 S21: 0.0535 S22: 0.0779 S23: 0.0134 REMARK 3 S31: -0.0659 S32: -0.1723 S33: -0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000077926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: LAUE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM CHLORIDE DIHYDRATE, 0.1M REMARK 280 HEPES SODIUM(7.5) 20%(V/V) 2-PROPANOL , PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.65400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.18150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.65400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.18150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 0 OG REMARK 470 LYS B 1 CG CD CE NZ REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 ILE B 254 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 517 O HOH A 566 2.10 REMARK 500 O HOH B 561 O HOH B 642 2.12 REMARK 500 O HOH B 441 O HOH B 697 2.13 REMARK 500 O HOH A 655 O HOH A 661 2.14 REMARK 500 O HOH A 517 O HOH A 687 2.15 REMARK 500 O HOH B 515 O HOH B 692 2.16 REMARK 500 O HOH B 533 O HOH B 674 2.16 REMARK 500 O ASP A 41 O HOH A 502 2.17 REMARK 500 O HOH B 437 O HOH B 677 2.18 REMARK 500 O HOH B 668 O HOH B 705 2.18 REMARK 500 O HOH B 486 O HOH B 674 2.18 REMARK 500 OD2 ASP B 176 O HOH B 537 2.18 REMARK 500 O HOH B 467 O HOH B 668 2.19 REMARK 500 O HOH A 517 O HOH A 565 2.19 REMARK 500 OE1 GLU A 80 NH2 ARG A 104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 -155.55 -69.97 REMARK 500 ASP A 156 -129.46 49.72 REMARK 500 SER B 0 -137.28 -102.20 REMARK 500 PRO B 64 40.13 -78.78 REMARK 500 ILE B 67 27.17 -70.17 REMARK 500 ASN B 78 -3.77 -142.48 REMARK 500 ASP B 156 -127.80 54.17 REMARK 500 ASP B 176 89.56 -152.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 68 ASN B 69 141.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD1 REMARK 620 2 ASP A 19 OD1 82.9 REMARK 620 3 LYS A 23 O 83.3 148.7 REMARK 620 4 ASP A 29 OD1 85.3 85.8 120.8 REMARK 620 5 ASN A 21 OD1 70.6 74.7 74.2 150.4 REMARK 620 6 ASP A 29 OD2 110.2 132.6 78.6 52.0 152.6 REMARK 620 7 HOH A 593 O 161.8 85.6 99.6 107.9 92.8 87.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JDZ RELATED DB: PDB DBREF 4JE0 A 0 310 UNP E5QTK7 E5QTK7_STAAH 235 545 DBREF 4JE0 B 0 310 UNP E5QTK7 E5QTK7_STAAH 235 545 SEQADV 4JE0 GLY A -4 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 PRO A -3 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 LEU A -2 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 GLY A -1 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 ALA A 311 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 GLY B -4 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 PRO B -3 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 LEU B -2 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 GLY B -1 UNP E5QTK7 EXPRESSION TAG SEQADV 4JE0 ALA B 311 UNP E5QTK7 EXPRESSION TAG SEQRES 1 A 316 GLY PRO LEU GLY SER LYS ASN VAL ASN ASP LEU ILE THR SEQRES 2 A 316 SER ASN THR THR LEU THR VAL VAL ASP ALA ASP LYS ASN SEQRES 3 A 316 ASN LYS ILE VAL PRO ALA GLN ASP TYR LEU ALA LEU LYS SEQRES 4 A 316 SER GLN ILE LYS VAL ASP ASP LYS VAL LYS SER GLY ASP SEQRES 5 A 316 TYR PHE THR ILE LYS TYR SER ASP THR VAL GLN VAL TYR SEQRES 6 A 316 GLY LEU ASN PRO GLU ASP ILE LYS ASN ILE GLY ASP ILE SEQRES 7 A 316 LYS ASP PRO ASN ASN GLY GLU THR ILE ALA THR ALA LYS SEQRES 8 A 316 HIS ASP THR ALA ASN ASN LEU ILE THR TYR THR PHE THR SEQRES 9 A 316 ASP TYR VAL ASP ARG PHE ASN SER VAL GLN MSE GLY ILE SEQRES 10 A 316 ASN TYR SER ILE TYR MSE ASP ALA ASP THR ILE PRO VAL SEQRES 11 A 316 SER LYS ASN ASP VAL GLU PHE ASN VAL THR ILE GLY ASN SEQRES 12 A 316 ASP THR THR LYS THR THR ALA ASN ILE GLN TYR PRO ASP SEQRES 13 A 316 TYR VAL SER ARG ASP ASN ASN SER ILE GLY SER ALA PHE SEQRES 14 A 316 THR GLU THR VAL SER HIS ALA GLY ASN ALA GLU ASP PRO SEQRES 15 A 316 GLY TYR TYR LYS GLN THR VAL TYR VAL ASN PRO SER GLU SEQRES 16 A 316 LYS SER LEU THR ASN ALA LYS LEU LYS VAL GLU ALA TYR SEQRES 17 A 316 HIS LYS ASP TYR PRO ASP ASN VAL GLY GLN ILE ASN LYS SEQRES 18 A 316 ASP VAL THR LYS ILE LYS ILE TYR GLN ALA PRO LYS ASP SEQRES 19 A 316 TYR VAL LEU ASN LYS GLY TYR ASP VAL ASN THR ASN GLN SEQRES 20 A 316 LEU ILE ASP VAL THR GLU GLN PHE LYS ASP LYS ILE THR SEQRES 21 A 316 TYR GLY ALA ASN ASP SER VAL ASN VAL ASP PHE GLY SER SEQRES 22 A 316 ILE ASN ASN SER TYR VAL VAL MSE VAL ASP THR LYS PHE SEQRES 23 A 316 GLU TYR THR THR SER GLU SER PRO THR LEU VAL GLN MSE SEQRES 24 A 316 ALA THR LEU THR SER ASP GLY ASN ARG SER VAL SER THR SEQRES 25 A 316 GLY ASN ALA ALA SEQRES 1 B 316 GLY PRO LEU GLY SER LYS ASN VAL ASN ASP LEU ILE THR SEQRES 2 B 316 SER ASN THR THR LEU THR VAL VAL ASP ALA ASP LYS ASN SEQRES 3 B 316 ASN LYS ILE VAL PRO ALA GLN ASP TYR LEU ALA LEU LYS SEQRES 4 B 316 SER GLN ILE LYS VAL ASP ASP LYS VAL LYS SER GLY ASP SEQRES 5 B 316 TYR PHE THR ILE LYS TYR SER ASP THR VAL GLN VAL TYR SEQRES 6 B 316 GLY LEU ASN PRO GLU ASP ILE LYS ASN ILE GLY ASP ILE SEQRES 7 B 316 LYS ASP PRO ASN ASN GLY GLU THR ILE ALA THR ALA LYS SEQRES 8 B 316 HIS ASP THR ALA ASN ASN LEU ILE THR TYR THR PHE THR SEQRES 9 B 316 ASP TYR VAL ASP ARG PHE ASN SER VAL GLN MSE GLY ILE SEQRES 10 B 316 ASN TYR SER ILE TYR MSE ASP ALA ASP THR ILE PRO VAL SEQRES 11 B 316 SER LYS ASN ASP VAL GLU PHE ASN VAL THR ILE GLY ASN SEQRES 12 B 316 ASP THR THR LYS THR THR ALA ASN ILE GLN TYR PRO ASP SEQRES 13 B 316 TYR VAL SER ARG ASP ASN ASN SER ILE GLY SER ALA PHE SEQRES 14 B 316 THR GLU THR VAL SER HIS ALA GLY ASN ALA GLU ASP PRO SEQRES 15 B 316 GLY TYR TYR LYS GLN THR VAL TYR VAL ASN PRO SER GLU SEQRES 16 B 316 LYS SER LEU THR ASN ALA LYS LEU LYS VAL GLU ALA TYR SEQRES 17 B 316 HIS LYS ASP TYR PRO ASP ASN VAL GLY GLN ILE ASN LYS SEQRES 18 B 316 ASP VAL THR LYS ILE LYS ILE TYR GLN ALA PRO LYS ASP SEQRES 19 B 316 TYR VAL LEU ASN LYS GLY TYR ASP VAL ASN THR ASN GLN SEQRES 20 B 316 LEU ILE ASP VAL THR GLU GLN PHE LYS ASP LYS ILE THR SEQRES 21 B 316 TYR GLY ALA ASN ASP SER VAL ASN VAL ASP PHE GLY SER SEQRES 22 B 316 ILE ASN ASN SER TYR VAL VAL MSE VAL ASP THR LYS PHE SEQRES 23 B 316 GLU TYR THR THR SER GLU SER PRO THR LEU VAL GLN MSE SEQRES 24 B 316 ALA THR LEU THR SER ASP GLY ASN ARG SER VAL SER THR SEQRES 25 B 316 GLY ASN ALA ALA MODRES 4JE0 MSE A 110 MET SELENOMETHIONINE MODRES 4JE0 MSE A 118 MET SELENOMETHIONINE MODRES 4JE0 MSE A 276 MET SELENOMETHIONINE MODRES 4JE0 MSE A 294 MET SELENOMETHIONINE MODRES 4JE0 MSE B 110 MET SELENOMETHIONINE MODRES 4JE0 MSE B 118 MET SELENOMETHIONINE MODRES 4JE0 MSE B 276 MET SELENOMETHIONINE MODRES 4JE0 MSE B 294 MET SELENOMETHIONINE HET MSE A 110 8 HET MSE A 118 8 HET MSE A 276 8 HET MSE A 294 8 HET MSE B 110 8 HET MSE B 118 8 HET MSE B 276 8 HET MSE B 294 8 HET CA A 401 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CA CA 2+ FORMUL 4 HOH *606(H2 O) HELIX 1 1 VAL A 3 ASP A 5 5 3 HELIX 2 2 ASN A 63 ILE A 70 5 8 HELIX 3 3 THR A 89 ASN A 91 5 3 HELIX 4 4 ASP A 100 PHE A 105 1 6 HELIX 5 5 ALA A 120 ILE A 123 5 4 HELIX 6 6 ASN A 239 LEU A 243 5 5 HELIX 7 7 THR A 247 LYS A 251 5 5 HELIX 8 8 VAL B 3 ASP B 5 5 3 HELIX 9 9 THR B 89 ASN B 91 5 3 HELIX 10 10 ASP B 100 PHE B 105 1 6 HELIX 11 11 ALA B 120 ILE B 123 5 4 HELIX 12 12 ASN B 239 LEU B 243 5 5 HELIX 13 13 THR B 247 LYS B 251 5 5 SHEET 1 A 4 ILE A 7 VAL A 16 0 SHEET 2 A 4 TYR A 30 VAL A 39 -1 O LYS A 38 N THR A 8 SHEET 3 A 4 VAL A 108 MSE A 118 -1 O ILE A 116 N LEU A 31 SHEET 4 A 4 VAL A 57 GLN A 58 -1 N GLN A 58 O TYR A 117 SHEET 1 B 6 ILE A 73 LYS A 74 0 SHEET 2 B 6 THR A 81 ASP A 88 -1 O ILE A 82 N ILE A 73 SHEET 3 B 6 LEU A 93 PHE A 98 -1 O THR A 95 N LYS A 86 SHEET 4 B 6 TYR A 48 TYR A 53 -1 N PHE A 49 O TYR A 96 SHEET 5 B 6 LYS A 127 ILE A 136 -1 O THR A 135 N LYS A 52 SHEET 6 B 6 ASP A 139 ILE A 147 -1 O THR A 143 N PHE A 132 SHEET 1 C 6 VAL A 153 ARG A 155 0 SHEET 2 C 6 ASN A 158 SER A 169 -1 O ILE A 160 N VAL A 153 SHEET 3 C 6 GLY A 178 VAL A 186 -1 O TYR A 185 N GLY A 161 SHEET 4 C 6 TYR A 273 LYS A 280 -1 O TYR A 273 N VAL A 186 SHEET 5 C 6 LYS A 220 GLN A 225 -1 N LYS A 220 O ASP A 278 SHEET 6 C 6 ILE A 244 ASP A 245 -1 O ILE A 244 N GLN A 225 SHEET 1 D 5 ILE A 254 GLY A 257 0 SHEET 2 D 5 SER A 261 ILE A 269 -1 O ASN A 263 N THR A 255 SHEET 3 D 5 LEU A 193 GLU A 201 -1 N LEU A 198 O VAL A 264 SHEET 4 D 5 VAL A 292 THR A 298 -1 O THR A 296 N LYS A 199 SHEET 5 D 5 VAL A 305 ALA A 310 -1 O THR A 307 N ALA A 295 SHEET 1 E 4 ILE B 7 VAL B 16 0 SHEET 2 E 4 TYR B 30 VAL B 39 -1 O TYR B 30 N VAL B 16 SHEET 3 E 4 VAL B 108 MSE B 118 -1 O ILE B 116 N LEU B 31 SHEET 4 E 4 VAL B 57 GLN B 58 -1 N GLN B 58 O TYR B 117 SHEET 1 F 6 ILE B 73 LYS B 74 0 SHEET 2 F 6 THR B 81 ASP B 88 -1 O ILE B 82 N ILE B 73 SHEET 3 F 6 LEU B 93 PHE B 98 -1 O LEU B 93 N ASP B 88 SHEET 4 F 6 TYR B 48 TYR B 53 -1 N PHE B 49 O TYR B 96 SHEET 5 F 6 LYS B 127 ILE B 136 -1 O THR B 135 N LYS B 52 SHEET 6 F 6 ASP B 139 ILE B 147 -1 O THR B 141 N VAL B 134 SHEET 1 G 6 VAL B 153 ARG B 155 0 SHEET 2 G 6 ASN B 158 SER B 169 -1 O ILE B 160 N VAL B 153 SHEET 3 G 6 GLY B 178 VAL B 186 -1 O LYS B 181 N GLU B 166 SHEET 4 G 6 TYR B 273 LYS B 280 -1 O VAL B 277 N GLN B 182 SHEET 5 G 6 LYS B 220 GLN B 225 -1 N LYS B 220 O ASP B 278 SHEET 6 G 6 ILE B 244 ASP B 245 -1 O ILE B 244 N GLN B 225 SHEET 1 H 5 ILE B 254 GLY B 257 0 SHEET 2 H 5 SER B 261 ILE B 269 -1 O ASN B 263 N THR B 255 SHEET 3 H 5 LEU B 193 GLU B 201 -1 N LEU B 193 O ILE B 269 SHEET 4 H 5 LEU B 291 SER B 299 -1 O MSE B 294 N GLU B 201 SHEET 5 H 5 ASN B 302 ALA B 311 -1 O THR B 307 N ALA B 295 LINK C GLN A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N GLY A 111 1555 1555 1.32 LINK C TYR A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ASP A 119 1555 1555 1.33 LINK C VAL A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N VAL A 277 1555 1555 1.33 LINK C GLN A 293 N MSE A 294 1555 1555 1.34 LINK C MSE A 294 N ALA A 295 1555 1555 1.33 LINK C GLN B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N GLY B 111 1555 1555 1.33 LINK C TYR B 117 N MSE B 118 1555 1555 1.32 LINK C MSE B 118 N ASP B 119 1555 1555 1.33 LINK C VAL B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N VAL B 277 1555 1555 1.33 LINK C GLN B 293 N MSE B 294 1555 1555 1.33 LINK C MSE B 294 N ALA B 295 1555 1555 1.33 LINK OD1 ASP A 17 CA CA A 401 1555 1555 2.25 LINK OD1 ASP A 19 CA CA A 401 1555 1555 2.26 LINK O LYS A 23 CA CA A 401 1555 1555 2.38 LINK OD1 ASP A 29 CA CA A 401 1555 1555 2.43 LINK OD1 ASN A 21 CA CA A 401 1555 1555 2.51 LINK OD2 ASP A 29 CA CA A 401 1555 1555 2.57 LINK CA CA A 401 O HOH A 593 1555 1555 2.88 SITE 1 AC1 6 ASP A 17 ASP A 19 ASN A 21 LYS A 23 SITE 2 AC1 6 ASP A 29 HOH A 593 CRYST1 133.308 58.363 112.362 90.00 111.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007501 0.000000 0.002900 0.00000 SCALE2 0.000000 0.017134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009542 0.00000