data_4JF3 # _entry.id 4JF3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JF3 pdb_00004jf3 10.2210/pdb4jf3/pdb RCSB RCSB077965 ? ? WWPDB D_1000077965 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-23 2 'Structure model' 1 1 2014-01-01 3 'Structure model' 1 2 2023-09-20 4 'Structure model' 1 3 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4JF3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JGS 'Crystal structure of a murine retroviral fusion protein' unspecified PDB 4JPR 'Crystal structure of an avian retroviral protein' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cook, J.D.' 1 'Aydin, H.' 2 'Lee, J.E.' 3 # _citation.id primary _citation.title 'Crystal structures of Beta- and gammaretrovirus fusion proteins reveal a role for electrostatic stapling in viral entry.' _citation.journal_abbrev J.Virol. _citation.journal_volume 88 _citation.page_first 143 _citation.page_last 153 _citation.year 2014 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24131724 _citation.pdbx_database_id_DOI 10.1128/JVI.02023-13 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Aydin, H.' 1 ? primary 'Cook, J.D.' 2 ? primary 'Lee, J.E.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Envelope glycoprotein' 11414.808 2 ? C483S 'fusion core, UNP residues 412-513' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 water nat water 18.015 197 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Transmembrane protein, TM, Glycoprotein 20, gp20' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSTGAAGLGVSITQYTKLSHQLISDVQAISSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCSFYANKS GIVRDKIKNLQDDLERRRRQLIDN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSTGAAGLGVSITQYTKLSHQLISDVQAISSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCSFYANKS GIVRDKIKNLQDDLERRRRQLIDN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 THR n 1 5 GLY n 1 6 ALA n 1 7 ALA n 1 8 GLY n 1 9 LEU n 1 10 GLY n 1 11 VAL n 1 12 SER n 1 13 ILE n 1 14 THR n 1 15 GLN n 1 16 TYR n 1 17 THR n 1 18 LYS n 1 19 LEU n 1 20 SER n 1 21 HIS n 1 22 GLN n 1 23 LEU n 1 24 ILE n 1 25 SER n 1 26 ASP n 1 27 VAL n 1 28 GLN n 1 29 ALA n 1 30 ILE n 1 31 SER n 1 32 SER n 1 33 THR n 1 34 ILE n 1 35 GLN n 1 36 ASP n 1 37 LEU n 1 38 GLN n 1 39 ASP n 1 40 GLN n 1 41 VAL n 1 42 ASP n 1 43 SER n 1 44 LEU n 1 45 ALA n 1 46 GLU n 1 47 VAL n 1 48 VAL n 1 49 LEU n 1 50 GLN n 1 51 ASN n 1 52 ARG n 1 53 ARG n 1 54 GLY n 1 55 LEU n 1 56 ASP n 1 57 LEU n 1 58 LEU n 1 59 THR n 1 60 ALA n 1 61 GLU n 1 62 GLN n 1 63 GLY n 1 64 GLY n 1 65 ILE n 1 66 CYS n 1 67 LEU n 1 68 ALA n 1 69 LEU n 1 70 GLN n 1 71 GLU n 1 72 LYS n 1 73 CYS n 1 74 SER n 1 75 PHE n 1 76 TYR n 1 77 ALA n 1 78 ASN n 1 79 LYS n 1 80 SER n 1 81 GLY n 1 82 ILE n 1 83 VAL n 1 84 ARG n 1 85 ASP n 1 86 LYS n 1 87 ILE n 1 88 LYS n 1 89 ASN n 1 90 LEU n 1 91 GLN n 1 92 ASP n 1 93 ASP n 1 94 LEU n 1 95 GLU n 1 96 ARG n 1 97 ARG n 1 98 ARG n 1 99 ARG n 1 100 GLN n 1 101 LEU n 1 102 ILE n 1 103 ASP n 1 104 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MPMV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene env _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mason-Pfizer monkey virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11855 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pJexpress _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 410 ? ? ? A . n A 1 2 SER 2 411 ? ? ? A . n A 1 3 SER 3 412 ? ? ? A . n A 1 4 THR 4 413 ? ? ? A . n A 1 5 GLY 5 414 ? ? ? A . n A 1 6 ALA 6 415 ? ? ? A . n A 1 7 ALA 7 416 ? ? ? A . n A 1 8 GLY 8 417 ? ? ? A . n A 1 9 LEU 9 418 ? ? ? A . n A 1 10 GLY 10 419 ? ? ? A . n A 1 11 VAL 11 420 ? ? ? A . n A 1 12 SER 12 421 ? ? ? A . n A 1 13 ILE 13 422 ? ? ? A . n A 1 14 THR 14 423 423 THR THR A . n A 1 15 GLN 15 424 424 GLN GLN A . n A 1 16 TYR 16 425 425 TYR TYR A . n A 1 17 THR 17 426 426 THR THR A . n A 1 18 LYS 18 427 427 LYS LYS A . n A 1 19 LEU 19 428 428 LEU LEU A . n A 1 20 SER 20 429 429 SER SER A . n A 1 21 HIS 21 430 430 HIS HIS A . n A 1 22 GLN 22 431 431 GLN GLN A . n A 1 23 LEU 23 432 432 LEU LEU A . n A 1 24 ILE 24 433 433 ILE ILE A . n A 1 25 SER 25 434 434 SER SER A . n A 1 26 ASP 26 435 435 ASP ASP A . n A 1 27 VAL 27 436 436 VAL VAL A . n A 1 28 GLN 28 437 437 GLN GLN A . n A 1 29 ALA 29 438 438 ALA ALA A . n A 1 30 ILE 30 439 439 ILE ILE A . n A 1 31 SER 31 440 440 SER SER A . n A 1 32 SER 32 441 441 SER SER A . n A 1 33 THR 33 442 442 THR THR A . n A 1 34 ILE 34 443 443 ILE ILE A . n A 1 35 GLN 35 444 444 GLN GLN A . n A 1 36 ASP 36 445 445 ASP ASP A . n A 1 37 LEU 37 446 446 LEU LEU A . n A 1 38 GLN 38 447 447 GLN GLN A . n A 1 39 ASP 39 448 448 ASP ASP A . n A 1 40 GLN 40 449 449 GLN GLN A . n A 1 41 VAL 41 450 450 VAL VAL A . n A 1 42 ASP 42 451 451 ASP ASP A . n A 1 43 SER 43 452 452 SER SER A . n A 1 44 LEU 44 453 453 LEU LEU A . n A 1 45 ALA 45 454 454 ALA ALA A . n A 1 46 GLU 46 455 455 GLU GLU A . n A 1 47 VAL 47 456 456 VAL VAL A . n A 1 48 VAL 48 457 457 VAL VAL A . n A 1 49 LEU 49 458 458 LEU LEU A . n A 1 50 GLN 50 459 459 GLN GLN A . n A 1 51 ASN 51 460 460 ASN ASN A . n A 1 52 ARG 52 461 461 ARG ARG A . n A 1 53 ARG 53 462 462 ARG ARG A . n A 1 54 GLY 54 463 463 GLY GLY A . n A 1 55 LEU 55 464 464 LEU LEU A . n A 1 56 ASP 56 465 465 ASP ASP A . n A 1 57 LEU 57 466 466 LEU LEU A . n A 1 58 LEU 58 467 467 LEU LEU A . n A 1 59 THR 59 468 468 THR THR A . n A 1 60 ALA 60 469 469 ALA ALA A . n A 1 61 GLU 61 470 470 GLU GLU A . n A 1 62 GLN 62 471 471 GLN GLN A . n A 1 63 GLY 63 472 472 GLY GLY A . n A 1 64 GLY 64 473 473 GLY GLY A . n A 1 65 ILE 65 474 474 ILE ILE A . n A 1 66 CYS 66 475 475 CYS CYS A . n A 1 67 LEU 67 476 476 LEU LEU A . n A 1 68 ALA 68 477 477 ALA ALA A . n A 1 69 LEU 69 478 478 LEU LEU A . n A 1 70 GLN 70 479 479 GLN GLN A . n A 1 71 GLU 71 480 480 GLU GLU A . n A 1 72 LYS 72 481 481 LYS LYS A . n A 1 73 CYS 73 482 482 CYS CYS A . n A 1 74 SER 74 483 483 SER SER A . n A 1 75 PHE 75 484 484 PHE PHE A . n A 1 76 TYR 76 485 485 TYR TYR A . n A 1 77 ALA 77 486 486 ALA ALA A . n A 1 78 ASN 78 487 487 ASN ASN A . n A 1 79 LYS 79 488 488 LYS LYS A . n A 1 80 SER 80 489 489 SER SER A . n A 1 81 GLY 81 490 490 GLY GLY A . n A 1 82 ILE 82 491 491 ILE ILE A . n A 1 83 VAL 83 492 492 VAL VAL A . n A 1 84 ARG 84 493 493 ARG ARG A . n A 1 85 ASP 85 494 494 ASP ASP A . n A 1 86 LYS 86 495 495 LYS LYS A . n A 1 87 ILE 87 496 496 ILE ILE A . n A 1 88 LYS 88 497 497 LYS LYS A . n A 1 89 ASN 89 498 498 ASN ASN A . n A 1 90 LEU 90 499 499 LEU LEU A . n A 1 91 GLN 91 500 500 GLN GLN A . n A 1 92 ASP 92 501 501 ASP ASP A . n A 1 93 ASP 93 502 502 ASP ASP A . n A 1 94 LEU 94 503 503 LEU LEU A . n A 1 95 GLU 95 504 504 GLU GLU A . n A 1 96 ARG 96 505 505 ARG ARG A . n A 1 97 ARG 97 506 506 ARG ARG A . n A 1 98 ARG 98 507 507 ARG ARG A . n A 1 99 ARG 99 508 508 ARG ARG A . n A 1 100 GLN 100 509 509 GLN GLN A . n A 1 101 LEU 101 510 510 LEU LEU A . n A 1 102 ILE 102 511 511 ILE ILE A . n A 1 103 ASP 103 512 512 ASP ASP A . n A 1 104 ASN 104 513 ? ? ? A . n B 1 1 GLY 1 410 ? ? ? B . n B 1 2 SER 2 411 ? ? ? B . n B 1 3 SER 3 412 ? ? ? B . n B 1 4 THR 4 413 ? ? ? B . n B 1 5 GLY 5 414 ? ? ? B . n B 1 6 ALA 6 415 ? ? ? B . n B 1 7 ALA 7 416 ? ? ? B . n B 1 8 GLY 8 417 ? ? ? B . n B 1 9 LEU 9 418 ? ? ? B . n B 1 10 GLY 10 419 ? ? ? B . n B 1 11 VAL 11 420 ? ? ? B . n B 1 12 SER 12 421 421 SER SER B . n B 1 13 ILE 13 422 422 ILE ILE B . n B 1 14 THR 14 423 423 THR THR B . n B 1 15 GLN 15 424 424 GLN GLN B . n B 1 16 TYR 16 425 425 TYR TYR B . n B 1 17 THR 17 426 426 THR THR B . n B 1 18 LYS 18 427 427 LYS LYS B . n B 1 19 LEU 19 428 428 LEU LEU B . n B 1 20 SER 20 429 429 SER SER B . n B 1 21 HIS 21 430 430 HIS HIS B . n B 1 22 GLN 22 431 431 GLN GLN B . n B 1 23 LEU 23 432 432 LEU LEU B . n B 1 24 ILE 24 433 433 ILE ILE B . n B 1 25 SER 25 434 434 SER SER B . n B 1 26 ASP 26 435 435 ASP ASP B . n B 1 27 VAL 27 436 436 VAL VAL B . n B 1 28 GLN 28 437 437 GLN GLN B . n B 1 29 ALA 29 438 438 ALA ALA B . n B 1 30 ILE 30 439 439 ILE ILE B . n B 1 31 SER 31 440 440 SER SER B . n B 1 32 SER 32 441 441 SER SER B . n B 1 33 THR 33 442 442 THR THR B . n B 1 34 ILE 34 443 443 ILE ILE B . n B 1 35 GLN 35 444 444 GLN GLN B . n B 1 36 ASP 36 445 445 ASP ASP B . n B 1 37 LEU 37 446 446 LEU LEU B . n B 1 38 GLN 38 447 447 GLN GLN B . n B 1 39 ASP 39 448 448 ASP ASP B . n B 1 40 GLN 40 449 449 GLN GLN B . n B 1 41 VAL 41 450 450 VAL VAL B . n B 1 42 ASP 42 451 451 ASP ASP B . n B 1 43 SER 43 452 452 SER SER B . n B 1 44 LEU 44 453 453 LEU LEU B . n B 1 45 ALA 45 454 454 ALA ALA B . n B 1 46 GLU 46 455 455 GLU GLU B . n B 1 47 VAL 47 456 456 VAL VAL B . n B 1 48 VAL 48 457 457 VAL VAL B . n B 1 49 LEU 49 458 458 LEU LEU B . n B 1 50 GLN 50 459 459 GLN GLN B . n B 1 51 ASN 51 460 460 ASN ASN B . n B 1 52 ARG 52 461 461 ARG ARG B . n B 1 53 ARG 53 462 462 ARG ARG B . n B 1 54 GLY 54 463 463 GLY GLY B . n B 1 55 LEU 55 464 464 LEU LEU B . n B 1 56 ASP 56 465 465 ASP ASP B . n B 1 57 LEU 57 466 466 LEU LEU B . n B 1 58 LEU 58 467 467 LEU LEU B . n B 1 59 THR 59 468 468 THR THR B . n B 1 60 ALA 60 469 469 ALA ALA B . n B 1 61 GLU 61 470 470 GLU GLU B . n B 1 62 GLN 62 471 471 GLN GLN B . n B 1 63 GLY 63 472 472 GLY GLY B . n B 1 64 GLY 64 473 473 GLY GLY B . n B 1 65 ILE 65 474 474 ILE ILE B . n B 1 66 CYS 66 475 475 CYS CYS B . n B 1 67 LEU 67 476 476 LEU LEU B . n B 1 68 ALA 68 477 477 ALA ALA B . n B 1 69 LEU 69 478 478 LEU LEU B . n B 1 70 GLN 70 479 479 GLN GLN B . n B 1 71 GLU 71 480 480 GLU GLU B . n B 1 72 LYS 72 481 481 LYS LYS B . n B 1 73 CYS 73 482 482 CYS CYS B . n B 1 74 SER 74 483 483 SER SER B . n B 1 75 PHE 75 484 484 PHE PHE B . n B 1 76 TYR 76 485 485 TYR TYR B . n B 1 77 ALA 77 486 486 ALA ALA B . n B 1 78 ASN 78 487 487 ASN ASN B . n B 1 79 LYS 79 488 488 LYS LYS B . n B 1 80 SER 80 489 489 SER SER B . n B 1 81 GLY 81 490 490 GLY GLY B . n B 1 82 ILE 82 491 491 ILE ILE B . n B 1 83 VAL 83 492 492 VAL VAL B . n B 1 84 ARG 84 493 493 ARG ARG B . n B 1 85 ASP 85 494 494 ASP ASP B . n B 1 86 LYS 86 495 495 LYS LYS B . n B 1 87 ILE 87 496 496 ILE ILE B . n B 1 88 LYS 88 497 497 LYS LYS B . n B 1 89 ASN 89 498 498 ASN ASN B . n B 1 90 LEU 90 499 499 LEU LEU B . n B 1 91 GLN 91 500 500 GLN GLN B . n B 1 92 ASP 92 501 501 ASP ASP B . n B 1 93 ASP 93 502 502 ASP ASP B . n B 1 94 LEU 94 503 503 LEU LEU B . n B 1 95 GLU 95 504 504 GLU GLU B . n B 1 96 ARG 96 505 505 ARG ARG B . n B 1 97 ARG 97 506 506 ARG ARG B . n B 1 98 ARG 98 507 507 ARG ARG B . n B 1 99 ARG 99 508 508 ARG ARG B . n B 1 100 GLN 100 509 509 GLN GLN B . n B 1 101 LEU 101 510 510 LEU LEU B . n B 1 102 ILE 102 511 511 ILE ILE B . n B 1 103 ASP 103 512 512 ASP ASP B . n B 1 104 ASN 104 513 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 601 1 CL CL A . D 2 CL 1 602 1 CL CL A . E 2 CL 1 601 1 CL CL B . F 3 HOH 1 701 1 HOH HOH A . F 3 HOH 2 702 3 HOH HOH A . F 3 HOH 3 703 5 HOH HOH A . F 3 HOH 4 704 6 HOH HOH A . F 3 HOH 5 705 7 HOH HOH A . F 3 HOH 6 706 12 HOH HOH A . F 3 HOH 7 707 14 HOH HOH A . F 3 HOH 8 708 15 HOH HOH A . F 3 HOH 9 709 17 HOH HOH A . F 3 HOH 10 710 18 HOH HOH A . F 3 HOH 11 711 22 HOH HOH A . F 3 HOH 12 712 23 HOH HOH A . F 3 HOH 13 713 24 HOH HOH A . F 3 HOH 14 714 29 HOH HOH A . F 3 HOH 15 715 30 HOH HOH A . F 3 HOH 16 716 31 HOH HOH A . F 3 HOH 17 717 33 HOH HOH A . F 3 HOH 18 718 35 HOH HOH A . F 3 HOH 19 719 36 HOH HOH A . F 3 HOH 20 720 38 HOH HOH A . F 3 HOH 21 721 40 HOH HOH A . F 3 HOH 22 722 41 HOH HOH A . F 3 HOH 23 723 44 HOH HOH A . F 3 HOH 24 724 45 HOH HOH A . F 3 HOH 25 725 50 HOH HOH A . F 3 HOH 26 726 55 HOH HOH A . F 3 HOH 27 727 58 HOH HOH A . F 3 HOH 28 728 59 HOH HOH A . F 3 HOH 29 729 60 HOH HOH A . F 3 HOH 30 730 61 HOH HOH A . F 3 HOH 31 731 62 HOH HOH A . F 3 HOH 32 732 66 HOH HOH A . F 3 HOH 33 733 69 HOH HOH A . F 3 HOH 34 734 71 HOH HOH A . F 3 HOH 35 735 72 HOH HOH A . F 3 HOH 36 736 73 HOH HOH A . F 3 HOH 37 737 74 HOH HOH A . F 3 HOH 38 738 78 HOH HOH A . F 3 HOH 39 739 81 HOH HOH A . F 3 HOH 40 740 82 HOH HOH A . F 3 HOH 41 741 85 HOH HOH A . F 3 HOH 42 742 86 HOH HOH A . F 3 HOH 43 743 87 HOH HOH A . F 3 HOH 44 744 91 HOH HOH A . F 3 HOH 45 745 92 HOH HOH A . F 3 HOH 46 746 96 HOH HOH A . F 3 HOH 47 747 97 HOH HOH A . F 3 HOH 48 748 104 HOH HOH A . F 3 HOH 49 749 106 HOH HOH A . F 3 HOH 50 750 108 HOH HOH A . F 3 HOH 51 751 109 HOH HOH A . F 3 HOH 52 752 115 HOH HOH A . F 3 HOH 53 753 116 HOH HOH A . F 3 HOH 54 754 117 HOH HOH A . F 3 HOH 55 755 120 HOH HOH A . F 3 HOH 56 756 123 HOH HOH A . F 3 HOH 57 757 124 HOH HOH A . F 3 HOH 58 758 126 HOH HOH A . F 3 HOH 59 759 127 HOH HOH A . F 3 HOH 60 760 129 HOH HOH A . F 3 HOH 61 761 130 HOH HOH A . F 3 HOH 62 762 133 HOH HOH A . F 3 HOH 63 763 135 HOH HOH A . F 3 HOH 64 764 136 HOH HOH A . F 3 HOH 65 765 137 HOH HOH A . F 3 HOH 66 766 138 HOH HOH A . F 3 HOH 67 767 139 HOH HOH A . F 3 HOH 68 768 144 HOH HOH A . F 3 HOH 69 769 145 HOH HOH A . F 3 HOH 70 770 146 HOH HOH A . F 3 HOH 71 771 147 HOH HOH A . F 3 HOH 72 772 151 HOH HOH A . F 3 HOH 73 773 152 HOH HOH A . F 3 HOH 74 774 156 HOH HOH A . F 3 HOH 75 775 157 HOH HOH A . F 3 HOH 76 776 159 HOH HOH A . F 3 HOH 77 777 167 HOH HOH A . F 3 HOH 78 778 171 HOH HOH A . F 3 HOH 79 779 174 HOH HOH A . F 3 HOH 80 780 176 HOH HOH A . F 3 HOH 81 781 177 HOH HOH A . F 3 HOH 82 782 178 HOH HOH A . F 3 HOH 83 783 182 HOH HOH A . F 3 HOH 84 784 183 HOH HOH A . F 3 HOH 85 785 184 HOH HOH A . F 3 HOH 86 786 189 HOH HOH A . F 3 HOH 87 787 193 HOH HOH A . F 3 HOH 88 788 194 HOH HOH A . F 3 HOH 89 789 199 HOH HOH A . F 3 HOH 90 790 202 HOH HOH A . F 3 HOH 91 791 214 HOH HOH A . F 3 HOH 92 792 223 HOH HOH A . G 3 HOH 1 701 2 HOH HOH B . G 3 HOH 2 702 4 HOH HOH B . G 3 HOH 3 703 8 HOH HOH B . G 3 HOH 4 704 9 HOH HOH B . G 3 HOH 5 705 10 HOH HOH B . G 3 HOH 6 706 11 HOH HOH B . G 3 HOH 7 707 13 HOH HOH B . G 3 HOH 8 708 16 HOH HOH B . G 3 HOH 9 709 19 HOH HOH B . G 3 HOH 10 710 20 HOH HOH B . G 3 HOH 11 711 21 HOH HOH B . G 3 HOH 12 712 25 HOH HOH B . G 3 HOH 13 713 26 HOH HOH B . G 3 HOH 14 714 27 HOH HOH B . G 3 HOH 15 715 28 HOH HOH B . G 3 HOH 16 716 32 HOH HOH B . G 3 HOH 17 717 34 HOH HOH B . G 3 HOH 18 718 37 HOH HOH B . G 3 HOH 19 719 39 HOH HOH B . G 3 HOH 20 720 42 HOH HOH B . G 3 HOH 21 721 43 HOH HOH B . G 3 HOH 22 722 46 HOH HOH B . G 3 HOH 23 723 47 HOH HOH B . G 3 HOH 24 724 48 HOH HOH B . G 3 HOH 25 725 49 HOH HOH B . G 3 HOH 26 726 51 HOH HOH B . G 3 HOH 27 727 52 HOH HOH B . G 3 HOH 28 728 53 HOH HOH B . G 3 HOH 29 729 54 HOH HOH B . G 3 HOH 30 730 56 HOH HOH B . G 3 HOH 31 731 57 HOH HOH B . G 3 HOH 32 732 63 HOH HOH B . G 3 HOH 33 733 64 HOH HOH B . G 3 HOH 34 734 65 HOH HOH B . G 3 HOH 35 735 67 HOH HOH B . G 3 HOH 36 736 68 HOH HOH B . G 3 HOH 37 737 70 HOH HOH B . G 3 HOH 38 738 75 HOH HOH B . G 3 HOH 39 739 76 HOH HOH B . G 3 HOH 40 740 77 HOH HOH B . G 3 HOH 41 741 79 HOH HOH B . G 3 HOH 42 742 80 HOH HOH B . G 3 HOH 43 743 83 HOH HOH B . G 3 HOH 44 744 84 HOH HOH B . G 3 HOH 45 745 88 HOH HOH B . G 3 HOH 46 746 89 HOH HOH B . G 3 HOH 47 747 90 HOH HOH B . G 3 HOH 48 748 93 HOH HOH B . G 3 HOH 49 749 95 HOH HOH B . G 3 HOH 50 750 98 HOH HOH B . G 3 HOH 51 751 100 HOH HOH B . G 3 HOH 52 752 101 HOH HOH B . G 3 HOH 53 753 102 HOH HOH B . G 3 HOH 54 754 103 HOH HOH B . G 3 HOH 55 755 105 HOH HOH B . G 3 HOH 56 756 107 HOH HOH B . G 3 HOH 57 757 110 HOH HOH B . G 3 HOH 58 758 111 HOH HOH B . G 3 HOH 59 759 112 HOH HOH B . G 3 HOH 60 760 113 HOH HOH B . G 3 HOH 61 761 114 HOH HOH B . G 3 HOH 62 762 118 HOH HOH B . G 3 HOH 63 763 119 HOH HOH B . G 3 HOH 64 764 121 HOH HOH B . G 3 HOH 65 765 122 HOH HOH B . G 3 HOH 66 766 125 HOH HOH B . G 3 HOH 67 767 128 HOH HOH B . G 3 HOH 68 768 131 HOH HOH B . G 3 HOH 69 769 132 HOH HOH B . G 3 HOH 70 770 134 HOH HOH B . G 3 HOH 71 771 140 HOH HOH B . G 3 HOH 72 772 141 HOH HOH B . G 3 HOH 73 773 142 HOH HOH B . G 3 HOH 74 774 143 HOH HOH B . G 3 HOH 75 775 148 HOH HOH B . G 3 HOH 76 776 149 HOH HOH B . G 3 HOH 77 777 153 HOH HOH B . G 3 HOH 78 778 155 HOH HOH B . G 3 HOH 79 779 160 HOH HOH B . G 3 HOH 80 780 161 HOH HOH B . G 3 HOH 81 781 162 HOH HOH B . G 3 HOH 82 782 163 HOH HOH B . G 3 HOH 83 783 165 HOH HOH B . G 3 HOH 84 784 168 HOH HOH B . G 3 HOH 85 785 169 HOH HOH B . G 3 HOH 86 786 172 HOH HOH B . G 3 HOH 87 787 175 HOH HOH B . G 3 HOH 88 788 179 HOH HOH B . G 3 HOH 89 789 180 HOH HOH B . G 3 HOH 90 790 185 HOH HOH B . G 3 HOH 91 791 186 HOH HOH B . G 3 HOH 92 792 187 HOH HOH B . G 3 HOH 93 793 190 HOH HOH B . G 3 HOH 94 794 196 HOH HOH B . G 3 HOH 95 795 197 HOH HOH B . G 3 HOH 96 796 198 HOH HOH B . G 3 HOH 97 797 200 HOH HOH B . G 3 HOH 98 798 204 HOH HOH B . G 3 HOH 99 799 208 HOH HOH B . G 3 HOH 100 800 209 HOH HOH B . G 3 HOH 101 801 210 HOH HOH B . G 3 HOH 102 802 218 HOH HOH B . G 3 HOH 103 803 219 HOH HOH B . G 3 HOH 104 804 220 HOH HOH B . G 3 HOH 105 805 221 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B SER 421 ? OG ? B SER 12 OG 2 1 Y 1 B ILE 422 ? CG1 ? B ILE 13 CG1 3 1 Y 1 B ILE 422 ? CG2 ? B ILE 13 CG2 4 1 Y 1 B ILE 422 ? CD1 ? B ILE 13 CD1 5 1 Y 1 B LYS 427 ? CG ? B LYS 18 CG 6 1 Y 1 B LYS 427 ? CD ? B LYS 18 CD 7 1 Y 1 B LYS 427 ? CE ? B LYS 18 CE 8 1 Y 1 B LYS 427 ? NZ ? B LYS 18 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 d*TREK 9.9.8.9D 'Apr 26 2010' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data reduction' http://www.rigaku.com/software/dtrek.html ? ? 2 PHENIX 1.8_1069 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CrystalClear . ? ? ? ? 'data collection' ? ? ? 5 d*TREK . ? ? ? ? 'data scaling' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _cell.length_a 43.951 _cell.length_b 43.951 _cell.length_c 81.732 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4JF3 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 3' _symmetry.entry_id 4JF3 _symmetry.Int_Tables_number 143 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4JF3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 38.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '18% (w/v) PEG 3400 and 0.2 M sodium thiocyanate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN A200' _diffrn_detector.pdbx_collection_date 2011-02-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'VariMax HF' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4JF3 _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 34.500 _reflns.number_obs 18731 _reflns.pdbx_scaling_rejects 1025 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_netI_over_sigmaI 19.300 _reflns.pdbx_chi_squared 0.990 _reflns.pdbx_redundancy 5.410 _reflns.percent_possible_obs 96.200 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.700 1.760 ? 6979 ? 0.301 4.400 ? 1.270 4.100 ? 1694 85.400 1 1 1.760 1.830 ? 9701 ? 0.275 5.000 ? 1.230 5.270 ? 1815 95.000 2 1 1.830 1.910 ? 10395 ? 0.213 6.400 ? 1.150 5.490 ? 1871 95.800 3 1 1.910 2.020 ? 10445 ? 0.164 8.000 ? 1.050 5.530 ? 1871 96.400 4 1 2.020 2.140 ? 10382 ? 0.123 10.800 ? 0.960 5.560 ? 1853 96.800 5 1 2.140 2.310 ? 10946 ? 0.092 14.200 ? 0.900 5.580 ? 1941 97.600 6 1 2.310 2.540 ? 10734 ? 0.068 18.900 ? 0.870 5.590 ? 1902 98.000 7 1 2.540 2.910 ? 10880 ? 0.047 27.400 ? 0.850 5.610 ? 1921 98.800 8 1 2.910 3.660 ? 10916 ? 0.034 39.000 ? 0.880 5.620 ? 1925 99.200 9 1 3.660 34.500 ? 10939 ? 0.028 50.300 ? 0.940 5.580 ? 1938 99.400 10 1 # _refine.entry_id 4JF3 _refine.ls_d_res_high 1.7000 _refine.ls_d_res_low 34.500 _refine.pdbx_ls_sigma_F 2.010 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.2000 _refine.ls_number_reflns_obs 18725 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.details ? _refine.ls_R_factor_all 0.1556 _refine.ls_R_factor_obs 0.1556 _refine.ls_R_factor_R_work 0.1537 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1933 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0800 _refine.ls_number_reflns_R_free 952 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.0525 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1Y4M _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 62.380 _refine.B_iso_min 4.690 _refine.pdbx_overall_phase_error 19.7500 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1438 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 197 _refine_hist.number_atoms_total 1638 _refine_hist.d_res_high 1.7000 _refine_hist.d_res_low 34.500 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1446 0.010 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1942 1.106 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 232 0.072 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 256 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 560 17.701 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.7001 1.7897 7 88.0000 2314 . 0.2287 0.2280 . 122 . 2436 . . 'X-RAY DIFFRACTION' 1.7897 1.9019 7 95.0000 2544 . 0.1857 0.2036 . 136 . 2680 . . 'X-RAY DIFFRACTION' 1.9019 2.0487 7 96.0000 2520 . 0.1779 0.2003 . 131 . 2651 . . 'X-RAY DIFFRACTION' 2.0487 2.2548 7 97.0000 2579 . 0.1396 0.1901 . 138 . 2717 . . 'X-RAY DIFFRACTION' 2.2548 2.5810 7 98.0000 2600 . 0.1453 0.1809 . 147 . 2747 . . 'X-RAY DIFFRACTION' 2.5810 3.2514 7 99.0000 2583 . 0.1487 0.2004 . 134 . 2717 . . 'X-RAY DIFFRACTION' 3.2514 34.5118 7 99.0000 2633 . 0.1488 0.1893 . 144 . 2777 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JF3 _struct.title 'Crystal structure of the mpmv tm retroviral fusion core' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JF3 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'six-helix bundle, fusion, MPMV TM, virus envelope, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENV_MPMV _struct_ref.pdbx_db_accession P07575 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STGAAGLGVSITQYTKLSHQLISDVQAISSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCCFYANKSGI VRDKIKNLQDDLERRRRQLIDN ; _struct_ref.pdbx_align_begin 412 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JF3 A 3 ? 104 ? P07575 412 ? 513 ? 412 513 2 1 4JF3 B 3 ? 104 ? P07575 412 ? 513 ? 412 513 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JF3 GLY A 1 ? UNP P07575 ? ? 'expression tag' 410 1 1 4JF3 SER A 2 ? UNP P07575 ? ? 'expression tag' 411 2 1 4JF3 SER A 74 ? UNP P07575 CYS 483 'engineered mutation' 483 3 2 4JF3 GLY B 1 ? UNP P07575 ? ? 'expression tag' 410 4 2 4JF3 SER B 2 ? UNP P07575 ? ? 'expression tag' 411 5 2 4JF3 SER B 74 ? UNP P07575 CYS 483 'engineered mutation' 483 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8820 ? 1 MORE -117 ? 1 'SSA (A^2)' 13470 ? 2 'ABSA (A^2)' 8310 ? 2 MORE -79 ? 2 'SSA (A^2)' 13740 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,C,D,F 2 1,4,5 B,E,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 43.9510000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 21.9755000000 -0.8660254038 -0.5000000000 0.0000000000 38.0626825217 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? THR A 59 ? THR A 423 THR A 468 1 ? 46 HELX_P HELX_P2 2 ALA A 60 ? GLY A 63 ? ALA A 469 GLY A 472 5 ? 4 HELX_P HELX_P3 3 GLY A 64 ? GLN A 70 ? GLY A 473 GLN A 479 1 ? 7 HELX_P HELX_P4 4 LYS A 79 ? ASP A 103 ? LYS A 488 ASP A 512 1 ? 25 HELX_P HELX_P5 5 ILE B 13 ? THR B 59 ? ILE B 422 THR B 468 1 ? 47 HELX_P HELX_P6 6 ALA B 60 ? GLY B 63 ? ALA B 469 GLY B 472 5 ? 4 HELX_P HELX_P7 7 GLY B 64 ? GLN B 70 ? GLY B 473 GLN B 479 1 ? 7 HELX_P HELX_P8 8 LYS B 79 ? ASP B 103 ? LYS B 488 ASP B 512 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 73 SG ? ? A CYS 475 A CYS 482 1_555 ? ? ? ? ? ? ? 2.013 ? ? disulf2 disulf ? ? B CYS 66 SG ? ? ? 1_555 B CYS 73 SG ? ? B CYS 475 B CYS 482 1_555 ? ? ? ? ? ? ? 2.010 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 66 ? CYS A 73 ? CYS A 475 ? 1_555 CYS A 482 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 66 ? CYS B 73 ? CYS B 475 ? 1_555 CYS B 482 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 601 ? 3 'BINDING SITE FOR RESIDUE CL A 601' AC2 Software A CL 602 ? 1 'BINDING SITE FOR RESIDUE CL A 602' AC3 Software B CL 601 ? 3 'BINDING SITE FOR RESIDUE CL B 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 51 ? ASN A 460 . ? 1_555 ? 2 AC1 3 ASN A 51 ? ASN A 460 . ? 3_555 ? 3 AC1 3 ASN A 51 ? ASN A 460 . ? 2_555 ? 4 AC2 1 ARG A 97 ? ARG A 506 . ? 1_555 ? 5 AC3 3 ASN B 51 ? ASN B 460 . ? 1_555 ? 6 AC3 3 ASN B 51 ? ASN B 460 . ? 2_655 ? 7 AC3 3 ASN B 51 ? ASN B 460 . ? 3_665 ? # _pdbx_entry_details.entry_id 4JF3 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 791 ? ? O B HOH 792 ? ? 2.07 2 1 O A HOH 731 ? ? O A HOH 756 ? ? 2.08 3 1 O A HOH 784 ? ? O A HOH 786 ? ? 2.11 4 1 O B HOH 733 ? ? O B HOH 765 ? ? 2.11 5 1 O B HOH 738 ? ? O B HOH 805 ? ? 2.15 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 601 ? C CL . 2 1 B CL 601 ? E CL . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 4.0497 -0.6619 -18.9426 0.0145 0.0392 0.0833 0.0008 -0.0088 -0.0026 0.5439 0.9310 3.9041 0.2079 -0.1639 -1.2292 0.0313 0.0120 -0.0431 -0.0471 -0.0197 -0.0265 0.0646 -0.0413 0.0863 'X-RAY DIFFRACTION' 2 ? refined 11.0691 -6.6576 0.4892 0.1065 0.0811 0.1252 -0.0082 -0.0276 -0.0237 2.2667 2.7852 4.5425 0.9931 -2.2085 -3.0846 0.0577 -0.0903 0.0602 -0.1900 -0.1918 -0.0376 0.1496 0.2456 0.3316 'X-RAY DIFFRACTION' 3 ? refined 17.9376 13.3845 22.4940 0.0208 0.0406 0.0794 0.0009 0.0082 0.0002 0.4643 0.8451 3.7346 0.1667 0.0696 1.0939 0.0187 0.0070 -0.0322 -0.0370 0.0293 0.0381 0.0725 0.0199 -0.0551 'X-RAY DIFFRACTION' 4 ? refined 10.9120 19.3434 41.3563 0.1015 0.0867 0.1296 -0.0101 0.0287 0.0215 1.9874 2.8587 4.6728 1.0323 2.1396 3.2661 0.0673 -0.1122 0.0624 -0.1866 0.1477 0.0223 0.1202 -0.2374 -0.3589 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 423 through 488 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 489 through 512 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 B 0 B 0 ;chain 'B' and (resid 421 through 488 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 0 B 0 ;chain 'B' and (resid 489 through 512 ) ; ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 410 ? A GLY 1 2 1 Y 1 A SER 411 ? A SER 2 3 1 Y 1 A SER 412 ? A SER 3 4 1 Y 1 A THR 413 ? A THR 4 5 1 Y 1 A GLY 414 ? A GLY 5 6 1 Y 1 A ALA 415 ? A ALA 6 7 1 Y 1 A ALA 416 ? A ALA 7 8 1 Y 1 A GLY 417 ? A GLY 8 9 1 Y 1 A LEU 418 ? A LEU 9 10 1 Y 1 A GLY 419 ? A GLY 10 11 1 Y 1 A VAL 420 ? A VAL 11 12 1 Y 1 A SER 421 ? A SER 12 13 1 Y 1 A ILE 422 ? A ILE 13 14 1 Y 1 A ASN 513 ? A ASN 104 15 1 Y 1 B GLY 410 ? B GLY 1 16 1 Y 1 B SER 411 ? B SER 2 17 1 Y 1 B SER 412 ? B SER 3 18 1 Y 1 B THR 413 ? B THR 4 19 1 Y 1 B GLY 414 ? B GLY 5 20 1 Y 1 B ALA 415 ? B ALA 6 21 1 Y 1 B ALA 416 ? B ALA 7 22 1 Y 1 B GLY 417 ? B GLY 8 23 1 Y 1 B LEU 418 ? B LEU 9 24 1 Y 1 B GLY 419 ? B GLY 10 25 1 Y 1 B VAL 420 ? B VAL 11 26 1 Y 1 B ASN 513 ? B ASN 104 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 PHE N N N N 231 PHE CA C N S 232 PHE C C N N 233 PHE O O N N 234 PHE CB C N N 235 PHE CG C Y N 236 PHE CD1 C Y N 237 PHE CD2 C Y N 238 PHE CE1 C Y N 239 PHE CE2 C Y N 240 PHE CZ C Y N 241 PHE OXT O N N 242 PHE H H N N 243 PHE H2 H N N 244 PHE HA H N N 245 PHE HB2 H N N 246 PHE HB3 H N N 247 PHE HD1 H N N 248 PHE HD2 H N N 249 PHE HE1 H N N 250 PHE HE2 H N N 251 PHE HZ H N N 252 PHE HXT H N N 253 SER N N N N 254 SER CA C N S 255 SER C C N N 256 SER O O N N 257 SER CB C N N 258 SER OG O N N 259 SER OXT O N N 260 SER H H N N 261 SER H2 H N N 262 SER HA H N N 263 SER HB2 H N N 264 SER HB3 H N N 265 SER HG H N N 266 SER HXT H N N 267 THR N N N N 268 THR CA C N S 269 THR C C N N 270 THR O O N N 271 THR CB C N R 272 THR OG1 O N N 273 THR CG2 C N N 274 THR OXT O N N 275 THR H H N N 276 THR H2 H N N 277 THR HA H N N 278 THR HB H N N 279 THR HG1 H N N 280 THR HG21 H N N 281 THR HG22 H N N 282 THR HG23 H N N 283 THR HXT H N N 284 TYR N N N N 285 TYR CA C N S 286 TYR C C N N 287 TYR O O N N 288 TYR CB C N N 289 TYR CG C Y N 290 TYR CD1 C Y N 291 TYR CD2 C Y N 292 TYR CE1 C Y N 293 TYR CE2 C Y N 294 TYR CZ C Y N 295 TYR OH O N N 296 TYR OXT O N N 297 TYR H H N N 298 TYR H2 H N N 299 TYR HA H N N 300 TYR HB2 H N N 301 TYR HB3 H N N 302 TYR HD1 H N N 303 TYR HD2 H N N 304 TYR HE1 H N N 305 TYR HE2 H N N 306 TYR HH H N N 307 TYR HXT H N N 308 VAL N N N N 309 VAL CA C N S 310 VAL C C N N 311 VAL O O N N 312 VAL CB C N N 313 VAL CG1 C N N 314 VAL CG2 C N N 315 VAL OXT O N N 316 VAL H H N N 317 VAL H2 H N N 318 VAL HA H N N 319 VAL HB H N N 320 VAL HG11 H N N 321 VAL HG12 H N N 322 VAL HG13 H N N 323 VAL HG21 H N N 324 VAL HG22 H N N 325 VAL HG23 H N N 326 VAL HXT H N N 327 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 PHE N CA sing N N 218 PHE N H sing N N 219 PHE N H2 sing N N 220 PHE CA C sing N N 221 PHE CA CB sing N N 222 PHE CA HA sing N N 223 PHE C O doub N N 224 PHE C OXT sing N N 225 PHE CB CG sing N N 226 PHE CB HB2 sing N N 227 PHE CB HB3 sing N N 228 PHE CG CD1 doub Y N 229 PHE CG CD2 sing Y N 230 PHE CD1 CE1 sing Y N 231 PHE CD1 HD1 sing N N 232 PHE CD2 CE2 doub Y N 233 PHE CD2 HD2 sing N N 234 PHE CE1 CZ doub Y N 235 PHE CE1 HE1 sing N N 236 PHE CE2 CZ sing Y N 237 PHE CE2 HE2 sing N N 238 PHE CZ HZ sing N N 239 PHE OXT HXT sing N N 240 SER N CA sing N N 241 SER N H sing N N 242 SER N H2 sing N N 243 SER CA C sing N N 244 SER CA CB sing N N 245 SER CA HA sing N N 246 SER C O doub N N 247 SER C OXT sing N N 248 SER CB OG sing N N 249 SER CB HB2 sing N N 250 SER CB HB3 sing N N 251 SER OG HG sing N N 252 SER OXT HXT sing N N 253 THR N CA sing N N 254 THR N H sing N N 255 THR N H2 sing N N 256 THR CA C sing N N 257 THR CA CB sing N N 258 THR CA HA sing N N 259 THR C O doub N N 260 THR C OXT sing N N 261 THR CB OG1 sing N N 262 THR CB CG2 sing N N 263 THR CB HB sing N N 264 THR OG1 HG1 sing N N 265 THR CG2 HG21 sing N N 266 THR CG2 HG22 sing N N 267 THR CG2 HG23 sing N N 268 THR OXT HXT sing N N 269 TYR N CA sing N N 270 TYR N H sing N N 271 TYR N H2 sing N N 272 TYR CA C sing N N 273 TYR CA CB sing N N 274 TYR CA HA sing N N 275 TYR C O doub N N 276 TYR C OXT sing N N 277 TYR CB CG sing N N 278 TYR CB HB2 sing N N 279 TYR CB HB3 sing N N 280 TYR CG CD1 doub Y N 281 TYR CG CD2 sing Y N 282 TYR CD1 CE1 sing Y N 283 TYR CD1 HD1 sing N N 284 TYR CD2 CE2 doub Y N 285 TYR CD2 HD2 sing N N 286 TYR CE1 CZ doub Y N 287 TYR CE1 HE1 sing N N 288 TYR CE2 CZ sing Y N 289 TYR CE2 HE2 sing N N 290 TYR CZ OH sing N N 291 TYR OH HH sing N N 292 TYR OXT HXT sing N N 293 VAL N CA sing N N 294 VAL N H sing N N 295 VAL N H2 sing N N 296 VAL CA C sing N N 297 VAL CA CB sing N N 298 VAL CA HA sing N N 299 VAL C O doub N N 300 VAL C OXT sing N N 301 VAL CB CG1 sing N N 302 VAL CB CG2 sing N N 303 VAL CB HB sing N N 304 VAL CG1 HG11 sing N N 305 VAL CG1 HG12 sing N N 306 VAL CG1 HG13 sing N N 307 VAL CG2 HG21 sing N N 308 VAL CG2 HG22 sing N N 309 VAL CG2 HG23 sing N N 310 VAL OXT HXT sing N N 311 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Y4M _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 4JF3 _atom_sites.fract_transf_matrix[1][1] 0.022752 _atom_sites.fract_transf_matrix[1][2] 0.013136 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012235 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_