data_4JFN # _entry.id 4JFN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JFN RCSB RCSB077985 WWPDB D_1000077985 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JFN _pdbx_database_status.recvd_initial_deposition_date 2013-02-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wild, K.' 1 'Baumkotter, F.' 2 'Kins, S.' 3 # _citation.id primary _citation.title 'Amyloid precursor protein dimerization and synaptogenic function depend on copper binding to the growth factor-like domain' _citation.journal_abbrev J.Neurosci. _citation.journal_volume 34 _citation.page_first 11159 _citation.page_last 11172 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 0270-6474 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25122912 _citation.pdbx_database_id_DOI 10.1523/JNEUROSCI.0180-14.2014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Baumkotter, F.' 1 primary 'Schmidt, N.' 2 primary 'Vargas, C.' 3 primary 'Schilling, S.' 4 primary 'Weber, R.' 5 primary 'Wagner, K.' 6 primary 'Fiedler, S.' 7 primary 'Klug, W.' 8 primary 'Radzimanowski, J.' 9 primary 'Nickolaus, S.' 10 primary 'Keller, S.' 11 primary 'Eggert, S.' 12 primary 'Wild, K.' 13 primary 'Kins, S.' 14 # _cell.entry_id 4JFN _cell.length_a 34.050 _cell.length_b 49.070 _cell.length_c 66.160 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JFN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Amyloid beta A4 protein' 18620.379 1 ? ? 'growth factor-like domain (GFLD), UNP residues 23-185' ? 2 non-polymer syn 'COPPER (II) ION' 63.546 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 52 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ABPP, APPI, APP, Alzheimer disease amyloid protein, Cerebral vascular amyloid peptide, CVAP, PreA4, Protease nexin-II, PN-II, N-APP, Soluble APP-alpha, S-APP-alpha, Soluble APP-beta, S-APP-beta, C99, Beta-amyloid protein 42, Beta-APP42, Beta-amyloid protein 40, Beta-APP40, C83, P3(42), P3(40), C80, Gamma-secretase C-terminal fragment 59, Amyloid intracellular domain 59, AICD-59, AID(59), Gamma-CTF(59), Gamma-secretase C-terminal fragment 57, Amyloid intracellular domain 57, AICD-57, AID(57), Gamma-CTF(57), Gamma-secretase C-terminal fragment 50, Amyloid intracellular domain 50, AICD-50, AID(50), Gamma-CTF(50), C31 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGR KQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGV EFV ; _entity_poly.pdbx_seq_one_letter_code_can ;DGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGR KQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGV EFV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLY n 1 3 ASN n 1 4 ALA n 1 5 GLY n 1 6 LEU n 1 7 LEU n 1 8 ALA n 1 9 GLU n 1 10 PRO n 1 11 GLN n 1 12 ILE n 1 13 ALA n 1 14 MET n 1 15 PHE n 1 16 CYS n 1 17 GLY n 1 18 ARG n 1 19 LEU n 1 20 ASN n 1 21 MET n 1 22 HIS n 1 23 MET n 1 24 ASN n 1 25 VAL n 1 26 GLN n 1 27 ASN n 1 28 GLY n 1 29 LYS n 1 30 TRP n 1 31 ASP n 1 32 SER n 1 33 ASP n 1 34 PRO n 1 35 SER n 1 36 GLY n 1 37 THR n 1 38 LYS n 1 39 THR n 1 40 CYS n 1 41 ILE n 1 42 ASP n 1 43 THR n 1 44 LYS n 1 45 GLU n 1 46 GLY n 1 47 ILE n 1 48 LEU n 1 49 GLN n 1 50 TYR n 1 51 CYS n 1 52 GLN n 1 53 GLU n 1 54 VAL n 1 55 TYR n 1 56 PRO n 1 57 GLU n 1 58 LEU n 1 59 GLN n 1 60 ILE n 1 61 THR n 1 62 ASN n 1 63 VAL n 1 64 VAL n 1 65 GLU n 1 66 ALA n 1 67 ASN n 1 68 GLN n 1 69 PRO n 1 70 VAL n 1 71 THR n 1 72 ILE n 1 73 GLN n 1 74 ASN n 1 75 TRP n 1 76 CYS n 1 77 LYS n 1 78 ARG n 1 79 GLY n 1 80 ARG n 1 81 LYS n 1 82 GLN n 1 83 CYS n 1 84 LYS n 1 85 THR n 1 86 HIS n 1 87 PRO n 1 88 HIS n 1 89 PHE n 1 90 VAL n 1 91 ILE n 1 92 PRO n 1 93 TYR n 1 94 ARG n 1 95 CYS n 1 96 LEU n 1 97 VAL n 1 98 GLY n 1 99 GLU n 1 100 PHE n 1 101 VAL n 1 102 SER n 1 103 ASP n 1 104 ALA n 1 105 LEU n 1 106 LEU n 1 107 VAL n 1 108 PRO n 1 109 ASP n 1 110 LYS n 1 111 CYS n 1 112 LYS n 1 113 PHE n 1 114 LEU n 1 115 HIS n 1 116 GLN n 1 117 GLU n 1 118 ARG n 1 119 MET n 1 120 ASP n 1 121 VAL n 1 122 CYS n 1 123 GLU n 1 124 THR n 1 125 HIS n 1 126 LEU n 1 127 HIS n 1 128 TRP n 1 129 HIS n 1 130 THR n 1 131 VAL n 1 132 ALA n 1 133 LYS n 1 134 GLU n 1 135 THR n 1 136 CYS n 1 137 SER n 1 138 GLU n 1 139 LYS n 1 140 SER n 1 141 THR n 1 142 ASN n 1 143 LEU n 1 144 HIS n 1 145 ASP n 1 146 TYR n 1 147 GLY n 1 148 MET n 1 149 LEU n 1 150 LEU n 1 151 PRO n 1 152 CYS n 1 153 GLY n 1 154 ILE n 1 155 ASP n 1 156 LYS n 1 157 PHE n 1 158 ARG n 1 159 GLY n 1 160 VAL n 1 161 GLU n 1 162 PHE n 1 163 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APP, A4, AD1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGR KQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGV EFV ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JFN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05067 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 185 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 185 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JFN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.48 _exptl_crystal.density_percent_sol 17.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '6% (w/v) PEG 3350, 0.1 M Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2010-09-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8726 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8726 # _reflns.entry_id 4JFN _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 1.35 _reflns.d_resolution_low 30.28 _reflns.d_resolution_high 1.75 _reflns.number_obs 11659 _reflns.number_all 11674 _reflns.percent_possible_obs 99.72 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JFN _refine.ls_number_reflns_obs 11659 _refine.ls_number_reflns_all 11674 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.276 _refine.ls_d_res_high 1.750 _refine.ls_percent_reflns_obs 99.72 _refine.ls_R_factor_obs 0.1831 _refine.ls_R_factor_all 0.1831 _refine.ls_R_factor_R_work 0.1807 _refine.ls_R_factor_R_free 0.2303 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.75 _refine.ls_number_reflns_R_free 554 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 45.4104 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1mwp _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.15 _refine.overall_FOM_work_R_set 0.7467 _refine.B_iso_max 88.000 _refine.B_iso_min 27.870 _refine.pdbx_overall_phase_error 29.8200 _refine.occupancy_max 1.000 _refine.occupancy_min 0.390 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 799 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 858 _refine_hist.d_res_high 1.750 _refine_hist.d_res_low 30.276 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 857 ? 'X-RAY DIFFRACTION' f_angle_d 1.156 ? ? 1166 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 14.018 ? ? 325 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.084 ? ? 124 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 154 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs 'X-RAY DIFFRACTION' 4 1.7500 1.9261 2718 0.2179 100.00 0.2906 . . 128 . . . . 'X-RAY DIFFRACTION' 4 1.9261 2.2047 2733 0.1678 100.00 0.2620 . . 139 . . . . 'X-RAY DIFFRACTION' 4 2.2047 2.7774 2767 0.1958 100.00 0.3018 . . 132 . . . . 'X-RAY DIFFRACTION' 4 2.7774 30.2801 2887 0.1732 99.00 0.1933 . . 155 . . . . # _struct.entry_id 4JFN _struct.title 'Crystal structure of the N-terminal, growth factor-like domain of the amyloid precursor protein bound to copper' _struct.pdbx_descriptor 'Amyloid beta A4 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JFN _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text ;Alzheimer's disease, GFLD, APP, Growth factor-like domain, copper binding, METAL BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 43 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TYR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 55 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 65 _struct_conf.end_auth_comp_id TYR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 77 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 16 SG ? ? ? 1_555 A CYS 40 SG ? ? A CYS 38 A CYS 62 1_555 ? ? ? ? ? ? ? 2.037 ? disulf2 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 73 A CYS 117 1_555 ? ? ? ? ? ? ? 2.063 ? metalc1 metalc ? ? A HIS 88 NE2 ? ? ? 1_555 B CU . CU ? ? A HIS 110 A CU 201 1_555 ? ? ? ? ? ? ? 1.949 ? metalc2 metalc ? ? A HIS 86 NE2 ? ? ? 1_555 B CU . CU ? ? A HIS 108 A CU 201 1_555 ? ? ? ? ? ? ? 2.032 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 30 ? SER A 32 ? TRP A 52 SER A 54 A 2 MET A 21 ? MET A 23 ? MET A 43 MET A 45 A 3 GLN A 11 ? ALA A 13 ? GLN A 33 ALA A 35 A 4 TYR A 93 ? VAL A 97 ? TYR A 115 VAL A 119 A 5 ILE A 60 ? GLU A 65 ? ILE A 82 GLU A 87 B 1 VAL A 70 ? ILE A 72 ? VAL A 92 ILE A 94 B 2 HIS A 88 ? VAL A 90 ? HIS A 110 VAL A 112 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 31 ? O ASP A 53 N HIS A 22 ? N HIS A 44 A 2 3 O MET A 21 ? O MET A 43 N ALA A 13 ? N ALA A 35 A 3 4 N ILE A 12 ? N ILE A 34 O TYR A 93 ? O TYR A 115 A 4 5 O ARG A 94 ? O ARG A 116 N VAL A 64 ? N VAL A 86 B 1 2 N VAL A 70 ? N VAL A 92 O VAL A 90 ? O VAL A 112 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU A 201' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE GOL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 1 ? ASP A 23 . ? 3_455 ? 2 AC1 4 ARG A 18 ? ARG A 40 . ? 1_555 ? 3 AC1 4 HIS A 86 ? HIS A 108 . ? 1_555 ? 4 AC1 4 HIS A 88 ? HIS A 110 . ? 1_555 ? 5 AC2 9 HIS A 22 ? HIS A 44 . ? 1_555 ? 6 AC2 9 MET A 23 ? MET A 45 . ? 1_555 ? 7 AC2 9 ASN A 24 ? ASN A 46 . ? 1_555 ? 8 AC2 9 VAL A 25 ? VAL A 47 . ? 1_555 ? 9 AC2 9 ASP A 31 ? ASP A 53 . ? 1_555 ? 10 AC2 9 VAL A 54 ? VAL A 76 . ? 1_555 ? 11 AC2 9 TYR A 55 ? TYR A 77 . ? 1_555 ? 12 AC2 9 GLN A 68 ? GLN A 90 . ? 3_445 ? 13 AC2 9 HOH D . ? HOH A 327 . ? 1_555 ? # _database_PDB_matrix.entry_id 4JFN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JFN _atom_sites.fract_transf_matrix[1][1] 0.029369 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020379 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015115 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 23 23 ASP ASP A . n A 1 2 GLY 2 24 24 GLY GLY A . n A 1 3 ASN 3 25 25 ASN ASN A . n A 1 4 ALA 4 26 26 ALA ALA A . n A 1 5 GLY 5 27 27 GLY GLY A . n A 1 6 LEU 6 28 28 LEU LEU A . n A 1 7 LEU 7 29 29 LEU LEU A . n A 1 8 ALA 8 30 30 ALA ALA A . n A 1 9 GLU 9 31 31 GLU GLU A . n A 1 10 PRO 10 32 32 PRO PRO A . n A 1 11 GLN 11 33 33 GLN GLN A . n A 1 12 ILE 12 34 34 ILE ILE A . n A 1 13 ALA 13 35 35 ALA ALA A . n A 1 14 MET 14 36 36 MET MET A . n A 1 15 PHE 15 37 37 PHE PHE A . n A 1 16 CYS 16 38 38 CYS CYS A . n A 1 17 GLY 17 39 39 GLY GLY A . n A 1 18 ARG 18 40 40 ARG ARG A . n A 1 19 LEU 19 41 41 LEU LEU A . n A 1 20 ASN 20 42 42 ASN ASN A . n A 1 21 MET 21 43 43 MET MET A . n A 1 22 HIS 22 44 44 HIS HIS A . n A 1 23 MET 23 45 45 MET MET A . n A 1 24 ASN 24 46 46 ASN ASN A . n A 1 25 VAL 25 47 47 VAL VAL A . n A 1 26 GLN 26 48 48 GLN GLN A . n A 1 27 ASN 27 49 49 ASN ASN A . n A 1 28 GLY 28 50 50 GLY GLY A . n A 1 29 LYS 29 51 51 LYS LYS A . n A 1 30 TRP 30 52 52 TRP TRP A . n A 1 31 ASP 31 53 53 ASP ASP A . n A 1 32 SER 32 54 54 SER SER A . n A 1 33 ASP 33 55 55 ASP ASP A . n A 1 34 PRO 34 56 56 PRO PRO A . n A 1 35 SER 35 57 57 SER SER A . n A 1 36 GLY 36 58 58 GLY GLY A . n A 1 37 THR 37 59 59 THR THR A . n A 1 38 LYS 38 60 60 LYS LYS A . n A 1 39 THR 39 61 61 THR THR A . n A 1 40 CYS 40 62 62 CYS CYS A . n A 1 41 ILE 41 63 63 ILE ILE A . n A 1 42 ASP 42 64 64 ASP ASP A . n A 1 43 THR 43 65 65 THR THR A . n A 1 44 LYS 44 66 66 LYS LYS A . n A 1 45 GLU 45 67 67 GLU GLU A . n A 1 46 GLY 46 68 68 GLY GLY A . n A 1 47 ILE 47 69 69 ILE ILE A . n A 1 48 LEU 48 70 70 LEU LEU A . n A 1 49 GLN 49 71 71 GLN GLN A . n A 1 50 TYR 50 72 72 TYR TYR A . n A 1 51 CYS 51 73 73 CYS CYS A . n A 1 52 GLN 52 74 74 GLN GLN A . n A 1 53 GLU 53 75 75 GLU GLU A . n A 1 54 VAL 54 76 76 VAL VAL A . n A 1 55 TYR 55 77 77 TYR TYR A . n A 1 56 PRO 56 78 78 PRO PRO A . n A 1 57 GLU 57 79 79 GLU GLU A . n A 1 58 LEU 58 80 80 LEU LEU A . n A 1 59 GLN 59 81 81 GLN GLN A . n A 1 60 ILE 60 82 82 ILE ILE A . n A 1 61 THR 61 83 83 THR THR A . n A 1 62 ASN 62 84 84 ASN ASN A . n A 1 63 VAL 63 85 85 VAL VAL A . n A 1 64 VAL 64 86 86 VAL VAL A . n A 1 65 GLU 65 87 87 GLU GLU A . n A 1 66 ALA 66 88 88 ALA ALA A . n A 1 67 ASN 67 89 89 ASN ASN A . n A 1 68 GLN 68 90 90 GLN GLN A . n A 1 69 PRO 69 91 91 PRO PRO A . n A 1 70 VAL 70 92 92 VAL VAL A . n A 1 71 THR 71 93 93 THR THR A . n A 1 72 ILE 72 94 94 ILE ILE A . n A 1 73 GLN 73 95 95 GLN GLN A . n A 1 74 ASN 74 96 96 ASN ASN A . n A 1 75 TRP 75 97 97 TRP TRP A . n A 1 76 CYS 76 98 98 CYS CYS A . n A 1 77 LYS 77 99 99 LYS LYS A . n A 1 78 ARG 78 100 100 ARG ARG A . n A 1 79 GLY 79 101 101 GLY GLY A . n A 1 80 ARG 80 102 102 ARG ARG A . n A 1 81 LYS 81 103 103 LYS LYS A . n A 1 82 GLN 82 104 104 GLN GLN A . n A 1 83 CYS 83 105 105 CYS CYS A . n A 1 84 LYS 84 106 106 LYS LYS A . n A 1 85 THR 85 107 107 THR THR A . n A 1 86 HIS 86 108 108 HIS HIS A . n A 1 87 PRO 87 109 109 PRO PRO A . n A 1 88 HIS 88 110 110 HIS HIS A . n A 1 89 PHE 89 111 111 PHE PHE A . n A 1 90 VAL 90 112 112 VAL VAL A . n A 1 91 ILE 91 113 113 ILE ILE A . n A 1 92 PRO 92 114 114 PRO PRO A . n A 1 93 TYR 93 115 115 TYR TYR A . n A 1 94 ARG 94 116 116 ARG ARG A . n A 1 95 CYS 95 117 117 CYS CYS A . n A 1 96 LEU 96 118 118 LEU LEU A . n A 1 97 VAL 97 119 119 VAL VAL A . n A 1 98 GLY 98 120 120 GLY GLY A . n A 1 99 GLU 99 121 121 GLU GLU A . n A 1 100 PHE 100 122 122 PHE PHE A . n A 1 101 VAL 101 123 123 VAL VAL A . n A 1 102 SER 102 124 ? ? ? A . n A 1 103 ASP 103 125 ? ? ? A . n A 1 104 ALA 104 126 ? ? ? A . n A 1 105 LEU 105 127 ? ? ? A . n A 1 106 LEU 106 128 ? ? ? A . n A 1 107 VAL 107 129 ? ? ? A . n A 1 108 PRO 108 130 ? ? ? A . n A 1 109 ASP 109 131 ? ? ? A . n A 1 110 LYS 110 132 ? ? ? A . n A 1 111 CYS 111 133 ? ? ? A . n A 1 112 LYS 112 134 ? ? ? A . n A 1 113 PHE 113 135 ? ? ? A . n A 1 114 LEU 114 136 ? ? ? A . n A 1 115 HIS 115 137 ? ? ? A . n A 1 116 GLN 116 138 ? ? ? A . n A 1 117 GLU 117 139 ? ? ? A . n A 1 118 ARG 118 140 ? ? ? A . n A 1 119 MET 119 141 ? ? ? A . n A 1 120 ASP 120 142 ? ? ? A . n A 1 121 VAL 121 143 ? ? ? A . n A 1 122 CYS 122 144 ? ? ? A . n A 1 123 GLU 123 145 ? ? ? A . n A 1 124 THR 124 146 ? ? ? A . n A 1 125 HIS 125 147 ? ? ? A . n A 1 126 LEU 126 148 ? ? ? A . n A 1 127 HIS 127 149 ? ? ? A . n A 1 128 TRP 128 150 ? ? ? A . n A 1 129 HIS 129 151 ? ? ? A . n A 1 130 THR 130 152 ? ? ? A . n A 1 131 VAL 131 153 ? ? ? A . n A 1 132 ALA 132 154 ? ? ? A . n A 1 133 LYS 133 155 ? ? ? A . n A 1 134 GLU 134 156 ? ? ? A . n A 1 135 THR 135 157 ? ? ? A . n A 1 136 CYS 136 158 ? ? ? A . n A 1 137 SER 137 159 ? ? ? A . n A 1 138 GLU 138 160 ? ? ? A . n A 1 139 LYS 139 161 ? ? ? A . n A 1 140 SER 140 162 ? ? ? A . n A 1 141 THR 141 163 ? ? ? A . n A 1 142 ASN 142 164 ? ? ? A . n A 1 143 LEU 143 165 ? ? ? A . n A 1 144 HIS 144 166 ? ? ? A . n A 1 145 ASP 145 167 ? ? ? A . n A 1 146 TYR 146 168 ? ? ? A . n A 1 147 GLY 147 169 ? ? ? A . n A 1 148 MET 148 170 ? ? ? A . n A 1 149 LEU 149 171 ? ? ? A . n A 1 150 LEU 150 172 ? ? ? A . n A 1 151 PRO 151 173 ? ? ? A . n A 1 152 CYS 152 174 ? ? ? A . n A 1 153 GLY 153 175 ? ? ? A . n A 1 154 ILE 154 176 ? ? ? A . n A 1 155 ASP 155 177 ? ? ? A . n A 1 156 LYS 156 178 ? ? ? A . n A 1 157 PHE 157 179 ? ? ? A . n A 1 158 ARG 158 180 ? ? ? A . n A 1 159 GLY 159 181 ? ? ? A . n A 1 160 VAL 160 182 ? ? ? A . n A 1 161 GLU 161 183 ? ? ? A . n A 1 162 PHE 162 184 ? ? ? A . n A 1 163 VAL 163 185 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id HIS _pdbx_struct_conn_angle.ptnr1_label_seq_id 88 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr1_auth_seq_id 110 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CU _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id CU _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id CU _pdbx_struct_conn_angle.ptnr2_auth_seq_id 201 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id HIS _pdbx_struct_conn_angle.ptnr3_label_seq_id 86 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr3_auth_seq_id 108 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 99.2 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-23 2 'Structure model' 1 1 2014-09-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 61 ? ? -110.88 -164.11 2 1 ARG A 102 ? ? -151.69 38.60 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 124 ? A SER 102 2 1 Y 1 A ASP 125 ? A ASP 103 3 1 Y 1 A ALA 126 ? A ALA 104 4 1 Y 1 A LEU 127 ? A LEU 105 5 1 Y 1 A LEU 128 ? A LEU 106 6 1 Y 1 A VAL 129 ? A VAL 107 7 1 Y 1 A PRO 130 ? A PRO 108 8 1 Y 1 A ASP 131 ? A ASP 109 9 1 Y 1 A LYS 132 ? A LYS 110 10 1 Y 1 A CYS 133 ? A CYS 111 11 1 Y 1 A LYS 134 ? A LYS 112 12 1 Y 1 A PHE 135 ? A PHE 113 13 1 Y 1 A LEU 136 ? A LEU 114 14 1 Y 1 A HIS 137 ? A HIS 115 15 1 Y 1 A GLN 138 ? A GLN 116 16 1 Y 1 A GLU 139 ? A GLU 117 17 1 Y 1 A ARG 140 ? A ARG 118 18 1 Y 1 A MET 141 ? A MET 119 19 1 Y 1 A ASP 142 ? A ASP 120 20 1 Y 1 A VAL 143 ? A VAL 121 21 1 Y 1 A CYS 144 ? A CYS 122 22 1 Y 1 A GLU 145 ? A GLU 123 23 1 Y 1 A THR 146 ? A THR 124 24 1 Y 1 A HIS 147 ? A HIS 125 25 1 Y 1 A LEU 148 ? A LEU 126 26 1 Y 1 A HIS 149 ? A HIS 127 27 1 Y 1 A TRP 150 ? A TRP 128 28 1 Y 1 A HIS 151 ? A HIS 129 29 1 Y 1 A THR 152 ? A THR 130 30 1 Y 1 A VAL 153 ? A VAL 131 31 1 Y 1 A ALA 154 ? A ALA 132 32 1 Y 1 A LYS 155 ? A LYS 133 33 1 Y 1 A GLU 156 ? A GLU 134 34 1 Y 1 A THR 157 ? A THR 135 35 1 Y 1 A CYS 158 ? A CYS 136 36 1 Y 1 A SER 159 ? A SER 137 37 1 Y 1 A GLU 160 ? A GLU 138 38 1 Y 1 A LYS 161 ? A LYS 139 39 1 Y 1 A SER 162 ? A SER 140 40 1 Y 1 A THR 163 ? A THR 141 41 1 Y 1 A ASN 164 ? A ASN 142 42 1 Y 1 A LEU 165 ? A LEU 143 43 1 Y 1 A HIS 166 ? A HIS 144 44 1 Y 1 A ASP 167 ? A ASP 145 45 1 Y 1 A TYR 168 ? A TYR 146 46 1 Y 1 A GLY 169 ? A GLY 147 47 1 Y 1 A MET 170 ? A MET 148 48 1 Y 1 A LEU 171 ? A LEU 149 49 1 Y 1 A LEU 172 ? A LEU 150 50 1 Y 1 A PRO 173 ? A PRO 151 51 1 Y 1 A CYS 174 ? A CYS 152 52 1 Y 1 A GLY 175 ? A GLY 153 53 1 Y 1 A ILE 176 ? A ILE 154 54 1 Y 1 A ASP 177 ? A ASP 155 55 1 Y 1 A LYS 178 ? A LYS 156 56 1 Y 1 A PHE 179 ? A PHE 157 57 1 Y 1 A ARG 180 ? A ARG 158 58 1 Y 1 A GLY 181 ? A GLY 159 59 1 Y 1 A VAL 182 ? A VAL 160 60 1 Y 1 A GLU 183 ? A GLU 161 61 1 Y 1 A PHE 184 ? A PHE 162 62 1 Y 1 A VAL 185 ? A VAL 163 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 GLYCEROL GOL 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU 1 201 1 CU CU A . C 3 GOL 1 202 1 GOL GOL A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 10 HOH HOH A . D 4 HOH 11 311 11 HOH HOH A . D 4 HOH 12 312 12 HOH HOH A . D 4 HOH 13 313 13 HOH HOH A . D 4 HOH 14 314 14 HOH HOH A . D 4 HOH 15 315 15 HOH HOH A . D 4 HOH 16 316 16 HOH HOH A . D 4 HOH 17 317 17 HOH HOH A . D 4 HOH 18 318 18 HOH HOH A . D 4 HOH 19 319 19 HOH HOH A . D 4 HOH 20 320 20 HOH HOH A . D 4 HOH 21 321 21 HOH HOH A . D 4 HOH 22 322 22 HOH HOH A . D 4 HOH 23 323 23 HOH HOH A . D 4 HOH 24 324 24 HOH HOH A . D 4 HOH 25 325 25 HOH HOH A . D 4 HOH 26 326 26 HOH HOH A . D 4 HOH 27 327 27 HOH HOH A . D 4 HOH 28 328 28 HOH HOH A . D 4 HOH 29 329 29 HOH HOH A . D 4 HOH 30 330 30 HOH HOH A . D 4 HOH 31 331 31 HOH HOH A . D 4 HOH 32 332 32 HOH HOH A . D 4 HOH 33 333 33 HOH HOH A . D 4 HOH 34 334 34 HOH HOH A . D 4 HOH 35 335 35 HOH HOH A . D 4 HOH 36 336 36 HOH HOH A . D 4 HOH 37 337 37 HOH HOH A . D 4 HOH 38 338 38 HOH HOH A . D 4 HOH 39 339 39 HOH HOH A . D 4 HOH 40 340 40 HOH HOH A . D 4 HOH 41 341 41 HOH HOH A . D 4 HOH 42 342 42 HOH HOH A . D 4 HOH 43 343 43 HOH HOH A . D 4 HOH 44 344 44 HOH HOH A . D 4 HOH 45 345 45 HOH HOH A . D 4 HOH 46 346 46 HOH HOH A . D 4 HOH 47 347 47 HOH HOH A . D 4 HOH 48 348 48 HOH HOH A . D 4 HOH 49 349 49 HOH HOH A . D 4 HOH 50 350 50 HOH HOH A . D 4 HOH 51 351 51 HOH HOH A . D 4 HOH 52 352 52 HOH HOH A . #