HEADER HYDROLASE/HYDROLASE INHIBITOR 28-FEB-13 4JFS TITLE CRYSTAL STRUCTURE OF A BACTERIAL FUCOSIDASE WITH IMINOSUGAR INHIBITOR TITLE 2 4-EPI-(+)-CODONOPSININE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-L-FUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 35-484; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC KEYWDS ALPHA-L-FUCOSIDASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.W.WRIGHT,G.J.DAVIES REVDAT 2 20-SEP-23 4JFS 1 REMARK REVDAT 1 18-SEP-13 4JFS 0 JRNL AUTH A.HOTTIN,D.W.WRIGHT,A.STEENACKERS,P.DELANNOY,F.DUBAR,C.BIOT, JRNL AUTH 2 G.J.DAVIES,J.B.BEHR JRNL TITL ALPHA-L-FUCOSIDASE INHIBITION BY PYRROLIDINE-FERROCENE JRNL TITL 2 HYBRIDS: RATIONALIZATION OF LIGAND-BINDING PROPERTIES BY JRNL TITL 3 STRUCTURAL STUDIES. JRNL REF CHEMISTRY V. 19 9526 2013 JRNL REFN ISSN 0947-6539 JRNL PMID 23740878 JRNL DOI 10.1002/CHEM.201301001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 83899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : AS 4J27 REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 308 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 852 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.60000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -2.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.82000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7427 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6711 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10115 ; 1.612 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15455 ; 1.073 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 901 ; 5.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;33.542 ;24.254 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1181 ;12.539 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.993 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1033 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8449 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1799 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3529 ; 1.852 ; 2.360 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3528 ; 1.850 ; 2.359 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4416 ; 2.563 ; 3.527 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 35 470 B 35 470 26798 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY. THE COORDINATES FROM REMARK 3 4J27 WERE CONVERTED INTO THE (ALMOST) ISOMORPHOUS CELL OF 4JFS REMARK 3 TO BUILD A STARTING MODEL DIRECTLY. THE RFREE FLAG FROM 4J27 WAS REMARK 3 USED FOR THIS DATASET. REMARK 4 REMARK 4 4JFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83920 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.578 REMARK 200 RESOLUTION RANGE LOW (A) : 97.101 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4J27 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.13 M AMMONIUM SULFATE, 12% PEG 6K, REMARK 280 0.1M IMIDAZOLE PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.88500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 473 REMARK 465 GLY A 474 REMARK 465 THR A 475 REMARK 465 LYS A 476 REMARK 465 SER A 477 REMARK 465 ILE A 478 REMARK 465 TYR A 479 REMARK 465 ARG A 480 REMARK 465 ASP A 481 REMARK 465 ALA A 482 REMARK 465 LEU A 483 REMARK 465 THR A 484 REMARK 465 ALA B 472 REMARK 465 LYS B 473 REMARK 465 GLY B 474 REMARK 465 THR B 475 REMARK 465 LYS B 476 REMARK 465 SER B 477 REMARK 465 ILE B 478 REMARK 465 TYR B 479 REMARK 465 ARG B 480 REMARK 465 ASP B 481 REMARK 465 ALA B 482 REMARK 465 LEU B 483 REMARK 465 THR B 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 102 CD CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 194 CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS A 270 CD CE NZ REMARK 470 ARG A 290 CD NE CZ NH1 NH2 REMARK 470 LYS A 372 CD CE NZ REMARK 470 LYS A 379 CD CE NZ REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 ARG A 447 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 LYS A 457 CG CD CE NZ REMARK 470 LYS A 468 CE NZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 102 CD CE NZ REMARK 470 LYS B 116 CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 LYS B 157 CE NZ REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 GLN B 248 CG CD OE1 NE2 REMARK 470 LYS B 270 CD CE NZ REMARK 470 ARG B 289 CZ NH1 NH2 REMARK 470 ARG B 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 379 CD CE NZ REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 ARG B 447 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 456 CG CD CE NZ REMARK 470 LYS B 457 CG CD CE NZ REMARK 470 LYS B 468 CD CE NZ REMARK 470 ARG B 470 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 385 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 417 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 417 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 60 -52.07 61.37 REMARK 500 ASN A 108 68.81 -153.84 REMARK 500 ASN A 153 43.10 -100.47 REMARK 500 LYS A 157 -37.82 72.56 REMARK 500 ASN A 239 50.19 -118.75 REMARK 500 HIS A 272 -61.98 65.09 REMARK 500 ASN A 314 61.24 -156.69 REMARK 500 ASN A 402 41.61 -109.08 REMARK 500 ARG B 60 -56.09 64.96 REMARK 500 ASN B 108 69.81 -153.31 REMARK 500 ASN B 153 42.50 -99.54 REMARK 500 LYS B 157 -35.52 70.63 REMARK 500 HIS B 272 -60.96 64.55 REMARK 500 ARG B 289 -48.40 84.62 REMARK 500 ASN B 314 49.94 -151.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 263 ARG B 264 -149.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 16Z A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 16Z B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WVV RELATED DB: PDB REMARK 900 RELATED ID: 4J27 RELATED DB: PDB REMARK 900 RELATED ID: 4J28 RELATED DB: PDB REMARK 900 RELATED ID: 4JFT RELATED DB: PDB REMARK 900 RELATED ID: 4JFU RELATED DB: PDB REMARK 900 RELATED ID: 4JFV RELATED DB: PDB REMARK 900 RELATED ID: 4JFW RELATED DB: PDB DBREF 4JFS A 35 484 UNP Q8A3I4 Q8A3I4_BACTN 35 484 DBREF 4JFS B 35 484 UNP Q8A3I4 Q8A3I4_BACTN 35 484 SEQRES 1 A 450 GLU ILE PRO LEU LYS TYR GLY ALA THR ASN GLU GLY LYS SEQRES 2 A 450 ARG GLN ASP PRO ALA MET GLN LYS PHE ARG ASP ASN ARG SEQRES 3 A 450 LEU GLY ALA PHE ILE HIS TRP GLY LEU TYR ALA ILE PRO SEQRES 4 A 450 GLY GLY GLU TRP ASN GLY LYS VAL TYR GLY GLY ALA ALA SEQRES 5 A 450 GLU TRP LEU LYS SER TRP ALA LYS VAL PRO ALA ASP GLU SEQRES 6 A 450 TRP LEU LYS LEU MET ASP GLN TRP ASN PRO THR LYS PHE SEQRES 7 A 450 ASP ALA LYS LYS TRP ALA LYS MET ALA LYS GLU MET GLY SEQRES 8 A 450 THR LYS TYR VAL LYS ILE THR THR LYS HIS HIS GLU GLY SEQRES 9 A 450 PHE CYS LEU TRP PRO SER LYS TYR THR LYS TYR THR VAL SEQRES 10 A 450 ALA ASN THR PRO TYR LYS ARG ASP ILE LEU GLY GLU LEU SEQRES 11 A 450 VAL LYS ALA TYR ASN ASP GLU GLY ILE ASP VAL HIS PHE SEQRES 12 A 450 TYR PHE SER VAL MET ASP TRP SER ASN PRO ASP TYR ARG SEQRES 13 A 450 TYR ASP ILE LYS SER LYS GLU ASP SER ILE ALA PHE SER SEQRES 14 A 450 ARG PHE LEU GLU PHE THR ASP ASN GLN LEU LYS GLU LEU SEQRES 15 A 450 ALA THR ARG TYR PRO THR VAL LYS ASP PHE TRP PHE ASP SEQRES 16 A 450 GLY THR TRP ASP ALA SER VAL LYS LYS ASN GLY TRP TRP SEQRES 17 A 450 THR ALA HIS ALA GLU GLN MET LEU LYS GLU LEU VAL PRO SEQRES 18 A 450 GLY VAL ALA ILE ASN SER ARG LEU ARG ALA ASP ASP LYS SEQRES 19 A 450 GLY LYS ARG HIS PHE ASP SER ASN GLY ARG LEU MET GLY SEQRES 20 A 450 ASP TYR GLU SER GLY TYR GLU ARG ARG LEU PRO ASP PRO SEQRES 21 A 450 VAL LYS ASP LEU LYS VAL THR GLN TRP ASP TRP GLU ALA SEQRES 22 A 450 CYS MET THR ILE PRO GLU ASN GLN TRP GLY TYR HIS LYS SEQRES 23 A 450 ASP TRP SER LEU SER TYR VAL LYS THR PRO ILE GLU VAL SEQRES 24 A 450 ILE ASP ARG ILE VAL HIS ALA VAL SER MET GLY GLY ASN SEQRES 25 A 450 MET VAL VAL ASN PHE GLY PRO GLN ALA ASP GLY ASP PHE SEQRES 26 A 450 ARG PRO GLU GLU LYS ALA MET ALA THR ALA ILE GLY LYS SEQRES 27 A 450 TRP MET ASN ARG TYR GLY LYS ALA VAL TYR ALA CYS ASP SEQRES 28 A 450 TYR ALA GLY PHE GLU LYS GLN ASP TRP GLY TYR TYR THR SEQRES 29 A 450 ARG GLY LYS ASN ASP GLU VAL TYR MET VAL VAL PHE ASN SEQRES 30 A 450 GLN PRO TYR SER GLU ARG LEU ILE VAL LYS THR PRO LYS SEQRES 31 A 450 GLY ILE THR VAL GLU LYS ALA THR LEU LEU THR THR GLY SEQRES 32 A 450 GLU ASP ILE THR VAL VAL GLU THR THR ARG ASN GLU TYR SEQRES 33 A 450 ASN VAL SER VAL PRO LYS LYS ASN PRO GLY GLU PRO TYR SEQRES 34 A 450 VAL ILE GLN LEU LYS VAL ARG ALA ALA LYS GLY THR LYS SEQRES 35 A 450 SER ILE TYR ARG ASP ALA LEU THR SEQRES 1 B 450 GLU ILE PRO LEU LYS TYR GLY ALA THR ASN GLU GLY LYS SEQRES 2 B 450 ARG GLN ASP PRO ALA MET GLN LYS PHE ARG ASP ASN ARG SEQRES 3 B 450 LEU GLY ALA PHE ILE HIS TRP GLY LEU TYR ALA ILE PRO SEQRES 4 B 450 GLY GLY GLU TRP ASN GLY LYS VAL TYR GLY GLY ALA ALA SEQRES 5 B 450 GLU TRP LEU LYS SER TRP ALA LYS VAL PRO ALA ASP GLU SEQRES 6 B 450 TRP LEU LYS LEU MET ASP GLN TRP ASN PRO THR LYS PHE SEQRES 7 B 450 ASP ALA LYS LYS TRP ALA LYS MET ALA LYS GLU MET GLY SEQRES 8 B 450 THR LYS TYR VAL LYS ILE THR THR LYS HIS HIS GLU GLY SEQRES 9 B 450 PHE CYS LEU TRP PRO SER LYS TYR THR LYS TYR THR VAL SEQRES 10 B 450 ALA ASN THR PRO TYR LYS ARG ASP ILE LEU GLY GLU LEU SEQRES 11 B 450 VAL LYS ALA TYR ASN ASP GLU GLY ILE ASP VAL HIS PHE SEQRES 12 B 450 TYR PHE SER VAL MET ASP TRP SER ASN PRO ASP TYR ARG SEQRES 13 B 450 TYR ASP ILE LYS SER LYS GLU ASP SER ILE ALA PHE SER SEQRES 14 B 450 ARG PHE LEU GLU PHE THR ASP ASN GLN LEU LYS GLU LEU SEQRES 15 B 450 ALA THR ARG TYR PRO THR VAL LYS ASP PHE TRP PHE ASP SEQRES 16 B 450 GLY THR TRP ASP ALA SER VAL LYS LYS ASN GLY TRP TRP SEQRES 17 B 450 THR ALA HIS ALA GLU GLN MET LEU LYS GLU LEU VAL PRO SEQRES 18 B 450 GLY VAL ALA ILE ASN SER ARG LEU ARG ALA ASP ASP LYS SEQRES 19 B 450 GLY LYS ARG HIS PHE ASP SER ASN GLY ARG LEU MET GLY SEQRES 20 B 450 ASP TYR GLU SER GLY TYR GLU ARG ARG LEU PRO ASP PRO SEQRES 21 B 450 VAL LYS ASP LEU LYS VAL THR GLN TRP ASP TRP GLU ALA SEQRES 22 B 450 CYS MET THR ILE PRO GLU ASN GLN TRP GLY TYR HIS LYS SEQRES 23 B 450 ASP TRP SER LEU SER TYR VAL LYS THR PRO ILE GLU VAL SEQRES 24 B 450 ILE ASP ARG ILE VAL HIS ALA VAL SER MET GLY GLY ASN SEQRES 25 B 450 MET VAL VAL ASN PHE GLY PRO GLN ALA ASP GLY ASP PHE SEQRES 26 B 450 ARG PRO GLU GLU LYS ALA MET ALA THR ALA ILE GLY LYS SEQRES 27 B 450 TRP MET ASN ARG TYR GLY LYS ALA VAL TYR ALA CYS ASP SEQRES 28 B 450 TYR ALA GLY PHE GLU LYS GLN ASP TRP GLY TYR TYR THR SEQRES 29 B 450 ARG GLY LYS ASN ASP GLU VAL TYR MET VAL VAL PHE ASN SEQRES 30 B 450 GLN PRO TYR SER GLU ARG LEU ILE VAL LYS THR PRO LYS SEQRES 31 B 450 GLY ILE THR VAL GLU LYS ALA THR LEU LEU THR THR GLY SEQRES 32 B 450 GLU ASP ILE THR VAL VAL GLU THR THR ARG ASN GLU TYR SEQRES 33 B 450 ASN VAL SER VAL PRO LYS LYS ASN PRO GLY GLU PRO TYR SEQRES 34 B 450 VAL ILE GLN LEU LYS VAL ARG ALA ALA LYS GLY THR LYS SEQRES 35 B 450 SER ILE TYR ARG ASP ALA LEU THR HET 16Z A 501 17 HET IMD A 502 5 HET IMD A 503 5 HET IMD A 504 5 HET SO4 A 505 5 HET GOL A 506 6 HET 16Z B 501 17 HET IMD B 502 5 HET IMD B 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HET SO4 B 506 5 HET EPE B 507 15 HETNAM 16Z (2S,3S,4R,5S)-2-(4-METHOXYPHENYL)-1,5- HETNAM 2 16Z DIMETHYLPYRROLIDINE-3,4-DIOL HETNAM IMD IMIDAZOLE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN 16Z 4-EPI-(+)-CODONOPSININE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 3 16Z 2(C13 H19 N O3) FORMUL 4 IMD 5(C3 H5 N2 1+) FORMUL 7 SO4 4(O4 S 2-) FORMUL 8 GOL C3 H8 O3 FORMUL 15 EPE C8 H18 N2 O4 S FORMUL 16 HOH *852(H2 O) HELIX 1 1 ASP A 50 ARG A 60 1 11 HELIX 2 2 GLY A 68 ILE A 72 5 5 HELIX 3 3 ALA A 85 GLU A 87 5 3 HELIX 4 4 TRP A 88 ALA A 93 1 6 HELIX 5 5 PRO A 96 LYS A 102 1 7 HELIX 6 6 LEU A 103 TRP A 107 5 5 HELIX 7 7 ASP A 113 GLY A 125 1 13 HELIX 8 8 THR A 150 THR A 154 5 5 HELIX 9 9 ASP A 159 GLU A 171 1 13 HELIX 10 10 SER A 195 TYR A 220 1 26 HELIX 11 11 ASP A 233 LYS A 238 1 6 HELIX 12 12 ASN A 239 VAL A 254 1 16 HELIX 13 13 SER A 261 ARG A 264 5 4 HELIX 14 14 ASP A 297 TRP A 303 5 7 HELIX 15 15 ASP A 321 SER A 325 5 5 HELIX 16 16 THR A 329 MET A 343 1 15 HELIX 17 17 ARG A 360 GLY A 378 1 19 HELIX 18 18 LYS A 379 VAL A 381 5 3 HELIX 19 19 ASP B 50 ARG B 60 1 11 HELIX 20 20 GLY B 68 ILE B 72 5 5 HELIX 21 21 ALA B 85 GLU B 87 5 3 HELIX 22 22 TRP B 88 ALA B 93 1 6 HELIX 23 23 PRO B 96 LYS B 102 1 7 HELIX 24 24 LEU B 103 TRP B 107 5 5 HELIX 25 25 ASP B 113 GLY B 125 1 13 HELIX 26 26 THR B 150 THR B 154 5 5 HELIX 27 27 ASP B 159 GLU B 171 1 13 HELIX 28 28 SER B 195 TYR B 220 1 26 HELIX 29 29 ASP B 233 LYS B 238 1 6 HELIX 30 30 ASN B 239 VAL B 254 1 16 HELIX 31 31 SER B 261 ARG B 264 5 4 HELIX 32 32 ASP B 297 TRP B 303 5 7 HELIX 33 33 ASP B 321 SER B 325 5 5 HELIX 34 34 THR B 329 MET B 343 1 15 HELIX 35 35 ARG B 360 GLY B 378 1 19 HELIX 36 36 LYS B 379 VAL B 381 5 3 SHEET 1 A 7 ALA A 258 ILE A 259 0 SHEET 2 A 7 ASP A 225 ASP A 229 1 N PHE A 226 O ALA A 258 SHEET 3 A 7 ASP A 174 SER A 180 1 N PHE A 177 O ASP A 225 SHEET 4 A 7 TYR A 128 LYS A 134 1 N ILE A 131 O TYR A 178 SHEET 5 A 7 LEU A 61 ILE A 65 1 N ILE A 65 O LYS A 130 SHEET 6 A 7 ASN A 346 PHE A 351 1 O PHE A 351 N PHE A 64 SHEET 7 A 7 GLU A 306 MET A 309 1 N ALA A 307 O ASN A 346 SHEET 1 B 2 GLU A 76 TRP A 77 0 SHEET 2 B 2 LYS A 80 VAL A 81 -1 O LYS A 80 N TRP A 77 SHEET 1 C 5 GLY A 395 ARG A 399 0 SHEET 2 C 5 VAL A 405 VAL A 409 -1 O VAL A 408 N TYR A 396 SHEET 3 C 5 TYR A 463 ALA A 471 -1 O LEU A 467 N VAL A 405 SHEET 4 C 5 ILE A 426 LEU A 433 -1 N GLU A 429 O LYS A 468 SHEET 5 C 5 ASP A 439 ILE A 440 -1 O ILE A 440 N ALA A 431 SHEET 1 D 3 ARG A 417 LYS A 421 0 SHEET 2 D 3 GLU A 449 SER A 453 -1 O VAL A 452 N LEU A 418 SHEET 3 D 3 VAL A 442 THR A 446 -1 N VAL A 443 O ASN A 451 SHEET 1 E 7 ALA B 258 ILE B 259 0 SHEET 2 E 7 ASP B 225 ASP B 229 1 N PHE B 226 O ALA B 258 SHEET 3 E 7 ASP B 174 SER B 180 1 N PHE B 177 O ASP B 225 SHEET 4 E 7 TYR B 128 THR B 132 1 N ILE B 131 O TYR B 178 SHEET 5 E 7 LEU B 61 ILE B 65 1 N ILE B 65 O LYS B 130 SHEET 6 E 7 ASN B 346 PHE B 351 1 O MET B 347 N GLY B 62 SHEET 7 E 7 GLU B 306 MET B 309 1 N ALA B 307 O ASN B 346 SHEET 1 F 2 GLU B 76 TRP B 77 0 SHEET 2 F 2 LYS B 80 VAL B 81 -1 O LYS B 80 N TRP B 77 SHEET 1 G 5 GLY B 395 ARG B 399 0 SHEET 2 G 5 VAL B 405 VAL B 409 -1 O VAL B 408 N TYR B 396 SHEET 3 G 5 TYR B 463 ARG B 470 -1 O LEU B 467 N VAL B 405 SHEET 4 G 5 THR B 427 LEU B 433 -1 N THR B 432 O GLN B 466 SHEET 5 G 5 ASP B 439 ILE B 440 -1 O ILE B 440 N ALA B 431 SHEET 1 H 3 ARG B 417 LYS B 421 0 SHEET 2 H 3 GLU B 449 SER B 453 -1 O VAL B 452 N LEU B 418 SHEET 3 H 3 VAL B 442 THR B 446 -1 N VAL B 443 O ASN B 451 SITE 1 AC1 11 HIS A 66 GLU A 87 TRP A 88 HIS A 135 SITE 2 AC1 11 TYR A 178 ASP A 229 TRP A 232 ARG A 262 SITE 3 AC1 11 GLU A 288 TRP A 316 GOL A 506 SITE 1 AC2 5 ILE A 65 TRP A 117 MET A 120 TYR A 168 SITE 2 AC2 5 PHE A 359 SITE 1 AC3 4 LYS A 90 PRO A 96 ALA A 97 HOH A 864 SITE 1 AC4 1 ARG A 399 SITE 1 AC5 4 ARG A 262 ARG A 271 HIS A 272 HOH A 988 SITE 1 AC6 8 ALA A 85 GLU A 87 TRP A 88 TRP A 92 SITE 2 AC6 8 ASN A 314 16Z A 501 HOH A 713 HOH A1076 SITE 1 AC7 10 HIS B 66 GLU B 87 TRP B 88 HIS B 135 SITE 2 AC7 10 TYR B 178 ASP B 229 TRP B 232 ARG B 262 SITE 3 AC7 10 GLU B 288 TRP B 316 SITE 1 AC8 5 ILE B 65 TRP B 117 MET B 120 TYR B 168 SITE 2 AC8 5 PHE B 359 SITE 1 AC9 1 TRP B 241 SITE 1 BC1 4 ARG B 262 ARG B 271 HIS B 272 HOH B 856 SITE 1 BC2 4 LYS B 90 PRO B 96 ALA B 97 HOH B 904 SITE 1 BC3 4 GLY B 286 GLU B 288 ARG B 290 HOH B 974 SITE 1 BC4 5 TYR B 82 GLY B 83 GLY B 84 TRP B 92 SITE 2 BC4 5 HOH B 972 CRYST1 68.430 95.770 97.111 90.00 90.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014613 0.000000 0.000207 0.00000 SCALE2 0.000000 0.010442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010299 0.00000