HEADER IMMUNE SYSTEM 01-MAR-13 4JGJ TITLE CRYSTAL STRUCTURE OF THE IG-LIKE D1 DOMAIN FROM MOUSE TITLE 2 CARCINOEMBRYOGENIC ANTIGEN-RELATED CELL ADHESION MOLECULE 15 TITLE 3 (CEACAM15) [PSI-NYSGRC-005691] COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 15; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP REESIDUES 26-140; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UNKNOWN PEPTIDE; COMPND 8 CHAIN: X, Y; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CEACAM-15, CEACAM15; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIEX; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: CEACAM-15; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PIEX KEYWDS CEACAM15, IG-LIKE D1 DOMAIN, IG SUPERFAMILY, IMMUNE SYSTEM, CELL KEYWDS 2 ADHESION, STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 3 GENOMICS RESEARCH CONSORTIUM (NYSGRC), ATOMS-TO-ANIMALS: THE IMMUNE KEYWDS 4 FUNCTION NETWORK, IFN EXPDTA X-RAY DIFFRACTION AUTHOR P.R.KUMAR,J.BONANNO,M.AHMED,R.BANU,R.BHOSLE,D.CALARESE,A.CELIKIGIL, AUTHOR 2 S.CHAMALA,M.K.CHAN,S.CHOWDHURY,A.FISER,S.GARFORTH,A.S.GLENN, AUTHOR 3 B.HILLERICH,K.KHAFIZOV,J.LOVE,H.PATEL,R.SEIDEL,M.STEAD,R.TORO, AUTHOR 4 S.G.NATHENSON,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 5 CONSORTIUM (NYSGRC),ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK AUTHOR 6 (IFN) REVDAT 5 28-FEB-24 4JGJ 1 HETSYN REVDAT 4 29-JUL-20 4JGJ 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE REVDAT 3 15-NOV-17 4JGJ 1 REMARK REVDAT 2 27-NOV-13 4JGJ 1 REMARK REVDAT 1 13-MAR-13 4JGJ 0 JRNL AUTH P.R.KUMAR,J.BONANNO,S.G.NATHENSON,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF THE IG-LIKE D1 DOMAIN OF CEACAM15 FROM JRNL TITL 2 MUS MUSCULUS [NYSGRC-005691] JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.3 REMARK 3 NUMBER OF REFLECTIONS : 6884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650 REMARK 3 FREE R VALUE TEST SET COUNT : 320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0982 - 3.3369 0.95 3978 204 0.1999 0.2349 REMARK 3 2 3.3369 - 2.6508 0.62 2575 107 0.2046 0.2628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1800 REMARK 3 ANGLE : 1.277 2411 REMARK 3 CHIRALITY : 0.070 279 REMARK 3 PLANARITY : 0.006 294 REMARK 3 DIHEDRAL : 16.286 639 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.8390 73.7955 11.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.6970 REMARK 3 T33: 0.5245 T12: -0.2096 REMARK 3 T13: -0.1811 T23: -0.1051 REMARK 3 L TENSOR REMARK 3 L11: 0.5037 L22: 1.0521 REMARK 3 L33: 0.8310 L12: -0.1086 REMARK 3 L13: -0.6074 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.4298 S12: -0.1070 S13: 0.1079 REMARK 3 S21: 0.2677 S22: 0.0633 S23: -0.3048 REMARK 3 S31: -0.0488 S32: 0.0721 S33: 0.4557 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.0117 72.0698 11.9217 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.5004 REMARK 3 T33: 0.3806 T12: -0.1393 REMARK 3 T13: -0.0160 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 3.0790 L22: 4.0737 REMARK 3 L33: 2.6165 L12: -0.8588 REMARK 3 L13: -0.5417 L23: 0.5735 REMARK 3 S TENSOR REMARK 3 S11: 0.5583 S12: 0.0107 S13: 0.7196 REMARK 3 S21: 0.6450 S22: -0.4907 S23: -0.1577 REMARK 3 S31: 0.1290 S32: -0.0725 S33: 0.0782 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 137) REMARK 3 ORIGIN FOR THE GROUP (A): 76.5109 76.9667 11.8447 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.6996 REMARK 3 T33: 0.6936 T12: -0.1440 REMARK 3 T13: -0.1458 T23: 0.0756 REMARK 3 L TENSOR REMARK 3 L11: 0.5266 L22: 1.6043 REMARK 3 L33: 1.4034 L12: -0.3660 REMARK 3 L13: -0.8210 L23: 0.1279 REMARK 3 S TENSOR REMARK 3 S11: 0.4931 S12: -0.1282 S13: 0.6684 REMARK 3 S21: 0.1358 S22: -0.0857 S23: -0.1356 REMARK 3 S31: 0.0677 S32: -0.0745 S33: -0.0119 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4566 58.5492 13.4913 REMARK 3 T TENSOR REMARK 3 T11: 0.3977 T22: 0.4547 REMARK 3 T33: 0.5274 T12: -0.2162 REMARK 3 T13: -0.0561 T23: -0.1551 REMARK 3 L TENSOR REMARK 3 L11: 0.2974 L22: 3.3037 REMARK 3 L33: 0.9418 L12: -0.5049 REMARK 3 L13: 0.3743 L23: 0.4147 REMARK 3 S TENSOR REMARK 3 S11: -0.1781 S12: 0.5814 S13: -0.3383 REMARK 3 S21: 0.4580 S22: 0.0625 S23: 0.6835 REMARK 3 S31: 0.1892 S32: 0.0325 S33: -0.0117 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8285 65.8298 12.1899 REMARK 3 T TENSOR REMARK 3 T11: 0.3139 T22: 0.6238 REMARK 3 T33: 0.4812 T12: -0.3661 REMARK 3 T13: -0.1050 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 1.4161 L22: 2.2174 REMARK 3 L33: 1.0680 L12: -0.1907 REMARK 3 L13: 0.1295 L23: -0.2015 REMARK 3 S TENSOR REMARK 3 S11: 0.2739 S12: 0.2022 S13: 0.2635 REMARK 3 S21: 0.4347 S22: -0.2112 S23: 0.5550 REMARK 3 S31: 0.2378 S32: -0.1072 S33: -0.0685 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0025 59.9775 12.6023 REMARK 3 T TENSOR REMARK 3 T11: 0.4826 T22: 0.7809 REMARK 3 T33: 0.6218 T12: -0.4205 REMARK 3 T13: -0.0261 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 0.5616 L22: 1.9715 REMARK 3 L33: 0.7399 L12: -0.5054 REMARK 3 L13: 0.1422 L23: -0.6033 REMARK 3 S TENSOR REMARK 3 S11: 0.3745 S12: 0.0862 S13: -0.3172 REMARK 3 S21: 0.0656 S22: 0.0604 S23: 0.6219 REMARK 3 S31: 0.1603 S32: -0.2558 S33: -0.0453 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 1 THROUGH 8) REMARK 3 ORIGIN FOR THE GROUP (A): 89.4138 74.7724 23.3606 REMARK 3 T TENSOR REMARK 3 T11: 0.4598 T22: 0.5689 REMARK 3 T33: 0.7909 T12: -0.3224 REMARK 3 T13: -0.1829 T23: -0.1540 REMARK 3 L TENSOR REMARK 3 L11: 0.0867 L22: 0.0433 REMARK 3 L33: 0.0878 L12: -0.0239 REMARK 3 L13: 0.0046 L23: 0.0560 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.0671 S13: 0.0221 REMARK 3 S21: 0.0661 S22: -0.0326 S23: 0.0274 REMARK 3 S31: -0.0114 S32: 0.0013 S33: -0.0787 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 101 THROUGH 108) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4258 47.4329 0.3777 REMARK 3 T TENSOR REMARK 3 T11: 0.4648 T22: 0.7465 REMARK 3 T33: 0.7870 T12: -0.3282 REMARK 3 T13: -0.2388 T23: -0.1705 REMARK 3 L TENSOR REMARK 3 L11: 0.4378 L22: 0.0395 REMARK 3 L33: 1.3638 L12: -0.0378 REMARK 3 L13: -0.7707 L23: 0.0504 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: 0.1070 S13: -0.0144 REMARK 3 S21: 0.0335 S22: -0.0177 S23: 0.0758 REMARK 3 S31: 0.0574 S32: -0.0540 S33: -0.0511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL; RESERVOIR (0.2M SODIUM CHLORIDE, 0.1M SODIUM REMARK 280 CITRATE:CITRIC ACID (PH 5.5), 40%(V/V) 1,2-PROPANEDIOL); REMARK 280 CRYOPROTECTION (RESERVOIR + FINAL CONCENTRATION OF 20%(V/V) DMSO) REMARK 280 , SITTING DROP VAPOR DIFFUSION, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.58400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.20469 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.24300 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 50.58400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 29.20469 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.24300 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 50.58400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 29.20469 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.24300 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.40937 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.48600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 58.40937 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.48600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 58.40937 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 50.48600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 21 REMARK 465 ASP A 22 REMARK 465 TYR A 23 REMARK 465 GLY A 24 REMARK 465 GLY A 25 REMARK 465 THR A 26 REMARK 465 ALA A 27 REMARK 465 GLN A 52 REMARK 465 GLU A 53 REMARK 465 GLU A 54 REMARK 465 ALA A 121 REMARK 465 HIS A 122 REMARK 465 VAL A 138 REMARK 465 THR A 139 REMARK 465 LYS A 140 REMARK 465 ALA A 141 REMARK 465 GLU A 142 REMARK 465 ASN A 143 REMARK 465 LEU A 144 REMARK 465 TYR A 145 REMARK 465 PHE A 146 REMARK 465 GLN B 21 REMARK 465 ASP B 22 REMARK 465 TYR B 23 REMARK 465 GLY B 24 REMARK 465 GLY B 25 REMARK 465 THR B 26 REMARK 465 ALA B 27 REMARK 465 GLN B 52 REMARK 465 GLU B 53 REMARK 465 GLU B 54 REMARK 465 ASN B 55 REMARK 465 ALA B 121 REMARK 465 HIS B 122 REMARK 465 VAL B 138 REMARK 465 THR B 139 REMARK 465 LYS B 140 REMARK 465 ALA B 141 REMARK 465 GLU B 142 REMARK 465 ASN B 143 REMARK 465 LEU B 144 REMARK 465 TYR B 145 REMARK 465 PHE B 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 37 O HOH A 405 2.15 REMARK 500 O GLY B 64 OG1 THR B 115 2.17 REMARK 500 O GLY A 64 OG1 THR A 115 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 30 98.39 -165.43 REMARK 500 ALA B 43 -166.80 -105.18 REMARK 500 LEU B 108 -13.29 62.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 301 REMARK 610 NAG B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-005691 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS X & Y IN THE STRUCTURE ARE POLYPEPTIDES WHICH THE AUTHORS REMARK 999 BELIEVE REPRESENTS EITHER THE N OR C-TERMINAL STRETCH CORRESPONDING REMARK 999 TO THE CLONING ARTIFACTS AT EITHER TERMINI OF THE CEACAM-15 REMARK 999 CONSTRUCT. HOWEVER THE POLYPEPTIDE CONNECTIVITY TO EITHER CHAIN A REMARK 999 OR B IS NOT WELL DEFINED. THE SIDE CHAIN DENSITIES OF X & Y WERE REMARK 999 ALSO NOT CLEAR AND HENCE MODELED AS POLY-ALANINE. THEREFORE, WE REMARK 999 LIKE TO CALL CHAINS X & Y AS UNKNOWN PEPTIDES. DBREF 4JGJ A 26 140 UNP A0JLX4 A0JLX4_MOUSE 26 140 DBREF 4JGJ B 26 140 UNP A0JLX4 A0JLX4_MOUSE 26 140 DBREF 4JGJ X 1 8 PDB 4JGJ 4JGJ 1 8 DBREF 4JGJ Y 1 8 PDB 4JGJ 4JGJ 1 8 SEQADV 4JGJ GLN A 21 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ ASP A 22 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ TYR A 23 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLY A 24 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLY A 25 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ ALA A 141 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLU A 142 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ ASN A 143 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ LEU A 144 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ TYR A 145 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ PHE A 146 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLN B 21 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ ASP B 22 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ TYR B 23 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLY B 24 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLY B 25 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ ALA B 141 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ GLU B 142 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ ASN B 143 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ LEU B 144 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ TYR B 145 UNP A0JLX4 EXPRESSION TAG SEQADV 4JGJ PHE B 146 UNP A0JLX4 EXPRESSION TAG SEQRES 1 A 126 GLN ASP TYR GLY GLY THR ALA ALA LEU LEU THR SER LYS SEQRES 2 A 126 GLU MET ARG PHE SER ALA ALA GLU GLY ALA LYS VAL LEU SEQRES 3 A 126 LEU SER VAL PRO ASP GLN GLU GLU ASN LEU LEU SER PHE SEQRES 4 A 126 SER TRP TYR LYS GLY LYS ASP VAL ASN GLU ASN PHE THR SEQRES 5 A 126 ILE ALA HIS TYR LYS LYS SER SER ASP SER LEU GLN LEU SEQRES 6 A 126 GLY LYS LYS VAL SER GLY ARG GLU GLU ILE TYR LYS ASP SEQRES 7 A 126 GLY SER MET MET LEU ARG ALA ILE THR LEU GLU ASP THR SEQRES 8 A 126 GLY PHE TYR THR LEU GLN THR PHE LYS ALA HIS GLY GLN SEQRES 9 A 126 GLN GLU VAL THR HIS VAL HIS LEU GLN VAL TYR LYS ILE SEQRES 10 A 126 VAL THR LYS ALA GLU ASN LEU TYR PHE SEQRES 1 B 126 GLN ASP TYR GLY GLY THR ALA ALA LEU LEU THR SER LYS SEQRES 2 B 126 GLU MET ARG PHE SER ALA ALA GLU GLY ALA LYS VAL LEU SEQRES 3 B 126 LEU SER VAL PRO ASP GLN GLU GLU ASN LEU LEU SER PHE SEQRES 4 B 126 SER TRP TYR LYS GLY LYS ASP VAL ASN GLU ASN PHE THR SEQRES 5 B 126 ILE ALA HIS TYR LYS LYS SER SER ASP SER LEU GLN LEU SEQRES 6 B 126 GLY LYS LYS VAL SER GLY ARG GLU GLU ILE TYR LYS ASP SEQRES 7 B 126 GLY SER MET MET LEU ARG ALA ILE THR LEU GLU ASP THR SEQRES 8 B 126 GLY PHE TYR THR LEU GLN THR PHE LYS ALA HIS GLY GLN SEQRES 9 B 126 GLN GLU VAL THR HIS VAL HIS LEU GLN VAL TYR LYS ILE SEQRES 10 B 126 VAL THR LYS ALA GLU ASN LEU TYR PHE SEQRES 1 X 8 UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 1 Y 8 UNK UNK UNK UNK UNK UNK UNK UNK HET NAG A 301 14 HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 7 HOH *12(H2 O) HELIX 1 1 ASN A 68 ASN A 70 5 3 HELIX 2 2 ASN B 68 ASN B 70 5 3 SHEET 1 A10 VAL B 45 LEU B 47 0 SHEET 2 A10 MET B 101 LEU B 103 -1 O MET B 101 N LEU B 47 SHEET 3 A10 GLU B 93 ILE B 95 -1 N GLU B 94 O MET B 102 SHEET 4 A10 SER A 82 LEU A 85 -1 N LEU A 85 O GLU B 93 SHEET 5 A10 THR A 72 LYS A 77 -1 N HIS A 75 O GLN A 84 SHEET 6 A10 SER A 58 LYS A 63 -1 N TRP A 61 O ILE A 73 SHEET 7 A10 GLY A 112 PHE A 119 -1 O PHE A 119 N SER A 58 SHEET 8 A10 GLN A 125 TYR A 135 -1 O LEU A 132 N GLY A 112 SHEET 9 A10 THR A 31 ALA A 40 1 N PHE A 37 O HIS A 131 SHEET 10 A10 UNK X 2 UNK X 4 -1 O UNK X 3 N SER A 32 SHEET 1 B10 VAL A 45 LEU A 47 0 SHEET 2 B10 MET A 101 LEU A 103 -1 O MET A 101 N LEU A 47 SHEET 3 B10 GLU A 93 ILE A 95 -1 N GLU A 94 O MET A 102 SHEET 4 B10 SER B 82 LEU B 85 -1 O LEU B 83 N ILE A 95 SHEET 5 B10 THR B 72 LYS B 77 -1 N HIS B 75 O GLN B 84 SHEET 6 B10 SER B 58 LYS B 63 -1 N TRP B 61 O ILE B 73 SHEET 7 B10 GLY B 112 PHE B 119 -1 O PHE B 119 N SER B 58 SHEET 8 B10 GLN B 125 TYR B 135 -1 O GLU B 126 N THR B 118 SHEET 9 B10 LEU B 30 ALA B 40 1 N PHE B 37 O HIS B 131 SHEET 10 B10 UNK Y 3 UNK Y 4 -1 O UNK Y 3 N SER B 32 CRYST1 101.168 101.168 75.729 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009885 0.005707 0.000000 0.00000 SCALE2 0.000000 0.011414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013205 0.00000