data_4JGL # _entry.id 4JGL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JGL pdb_00004jgl 10.2210/pdb4jgl/pdb RCSB RCSB078019 ? ? WWPDB D_1000078019 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-418267 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4JGL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BACEGG_01519) from Bacteroides eggerthii DSM 20697 at 1.25 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4JGL _cell.length_a 79.322 _cell.length_b 79.322 _cell.length_c 50.113 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JGL _symmetry.Int_Tables_number 169 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 19021.312 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 233 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GGAKKNVQDAEGQAEAGGNAPSGYL(MSE)PAISANNFCGDFTT(MSE)TPDYGYL(MSE)PEKGLFLK(MSE)HDIRGA YGINIYTYV(MSE)DGDNIQCTPGHFV(MSE)IVPRGGDKLEITIKKSS(MSE)KNTPSFTFIPTPDCENSAYVATEKVA GKYYYLCGDAEARYKFEDLFEDERCAEFKNLVDNYGK ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAKKNVQDAEGQAEAGGNAPSGYLMPAISANNFCGDFTTMTPDYGYLMPEKGLFLKMHDIRGAYGINIYTYVMDGDNIQ CTPGHFVMIVPRGGDKLEITIKKSSMKNTPSFTFIPTPDCENSAYVATEKVAGKYYYLCGDAEARYKFEDLFEDERCAEF KNLVDNYGK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-418267 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ALA n 1 4 LYS n 1 5 LYS n 1 6 ASN n 1 7 VAL n 1 8 GLN n 1 9 ASP n 1 10 ALA n 1 11 GLU n 1 12 GLY n 1 13 GLN n 1 14 ALA n 1 15 GLU n 1 16 ALA n 1 17 GLY n 1 18 GLY n 1 19 ASN n 1 20 ALA n 1 21 PRO n 1 22 SER n 1 23 GLY n 1 24 TYR n 1 25 LEU n 1 26 MSE n 1 27 PRO n 1 28 ALA n 1 29 ILE n 1 30 SER n 1 31 ALA n 1 32 ASN n 1 33 ASN n 1 34 PHE n 1 35 CYS n 1 36 GLY n 1 37 ASP n 1 38 PHE n 1 39 THR n 1 40 THR n 1 41 MSE n 1 42 THR n 1 43 PRO n 1 44 ASP n 1 45 TYR n 1 46 GLY n 1 47 TYR n 1 48 LEU n 1 49 MSE n 1 50 PRO n 1 51 GLU n 1 52 LYS n 1 53 GLY n 1 54 LEU n 1 55 PHE n 1 56 LEU n 1 57 LYS n 1 58 MSE n 1 59 HIS n 1 60 ASP n 1 61 ILE n 1 62 ARG n 1 63 GLY n 1 64 ALA n 1 65 TYR n 1 66 GLY n 1 67 ILE n 1 68 ASN n 1 69 ILE n 1 70 TYR n 1 71 THR n 1 72 TYR n 1 73 VAL n 1 74 MSE n 1 75 ASP n 1 76 GLY n 1 77 ASP n 1 78 ASN n 1 79 ILE n 1 80 GLN n 1 81 CYS n 1 82 THR n 1 83 PRO n 1 84 GLY n 1 85 HIS n 1 86 PHE n 1 87 VAL n 1 88 MSE n 1 89 ILE n 1 90 VAL n 1 91 PRO n 1 92 ARG n 1 93 GLY n 1 94 GLY n 1 95 ASP n 1 96 LYS n 1 97 LEU n 1 98 GLU n 1 99 ILE n 1 100 THR n 1 101 ILE n 1 102 LYS n 1 103 LYS n 1 104 SER n 1 105 SER n 1 106 MSE n 1 107 LYS n 1 108 ASN n 1 109 THR n 1 110 PRO n 1 111 SER n 1 112 PHE n 1 113 THR n 1 114 PHE n 1 115 ILE n 1 116 PRO n 1 117 THR n 1 118 PRO n 1 119 ASP n 1 120 CYS n 1 121 GLU n 1 122 ASN n 1 123 SER n 1 124 ALA n 1 125 TYR n 1 126 VAL n 1 127 ALA n 1 128 THR n 1 129 GLU n 1 130 LYS n 1 131 VAL n 1 132 ALA n 1 133 GLY n 1 134 LYS n 1 135 TYR n 1 136 TYR n 1 137 TYR n 1 138 LEU n 1 139 CYS n 1 140 GLY n 1 141 ASP n 1 142 ALA n 1 143 GLU n 1 144 ALA n 1 145 ARG n 1 146 TYR n 1 147 LYS n 1 148 PHE n 1 149 GLU n 1 150 ASP n 1 151 LEU n 1 152 PHE n 1 153 GLU n 1 154 ASP n 1 155 GLU n 1 156 ARG n 1 157 CYS n 1 158 ALA n 1 159 GLU n 1 160 PHE n 1 161 LYS n 1 162 ASN n 1 163 LEU n 1 164 VAL n 1 165 ASP n 1 166 ASN n 1 167 TYR n 1 168 GLY n 1 169 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BACEGG_01519, ZP_03458740.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DSM 20697' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides eggerthii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 483216 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B7AGJ1_9BACE _struct_ref.pdbx_db_accession B7AGJ1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GAKKNVQDAEGQAEAGGNAPSGYLMPAISANNFCGDFTTMTPDYGYLMPEKGLFLKMHDIRGAYGINIYTYVMDGDNIQC TPGHFVMIVPRGGDKLEITIKKSSMKNTPSFTFIPTPDCENSAYVATEKVAGKYYYLCGDAEARYKFEDLFEDERCAEFK NLVDNYGK ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JGL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 169 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B7AGJ1 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 191 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 24 _struct_ref_seq.pdbx_auth_seq_align_end 191 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4JGL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code B7AGJ1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4JGL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details '0.2M calcium acetate, 20.0% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details 'KOHZU: Double Crystal Si(111)' _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-09-20 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.918401 1.0 2 0.979338 1.0 3 0.979108 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list '0.918401, 0.979338, 0.979108' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.25 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 12.600 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs ? _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4JGL _reflns.B_iso_Wilson_estimate ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rsym_value 0.097 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 49718 _reflns.d_resolution_low 28.331 _reflns.pdbx_redundancy 11.000 _reflns.number_obs 49718 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.250 1.280 ? 39805 ? 0.014 0.5 1.371 ? 10.900 ? 3645 100.000 1 1 1.280 1.320 ? 39307 ? 0.014 0.7 1.081 ? 11.000 ? 3584 100.000 2 1 1.320 1.360 ? 37919 ? 0.014 0.8 0.914 ? 11.000 ? 3457 100.000 3 1 1.360 1.400 ? 36901 ? 0.014 1.0 0.752 ? 11.000 ? 3358 100.000 4 1 1.400 1.440 ? 36161 ? 0.014 1.2 0.599 ? 11.000 ? 3293 100.000 5 1 1.440 1.490 ? 34528 ? 0.014 1.6 0.442 ? 11.000 ? 3131 100.000 6 1 1.490 1.550 ? 33728 ? 0.014 2.2 0.335 ? 11.000 ? 3055 100.000 7 1 1.550 1.610 ? 32678 ? 0.014 2.9 0.251 ? 11.100 ? 2956 100.000 8 1 1.610 1.690 ? 31066 ? 0.014 3.7 0.198 ? 11.000 ? 2814 100.000 9 1 1.690 1.770 ? 29888 ? 0.014 4.5 0.161 ? 11.000 ? 2706 100.000 10 1 1.770 1.860 ? 28137 ? 0.014 5.5 0.128 ? 11.000 ? 2549 100.000 11 1 1.860 1.980 ? 27025 ? 0.014 6.5 0.104 ? 11.000 ? 2455 100.000 12 1 1.980 2.110 ? 24841 ? 0.014 7.0 0.095 ? 10.900 ? 2271 100.000 13 1 2.110 2.280 ? 23338 ? 0.014 7.9 0.083 ? 10.800 ? 2158 100.000 14 1 2.280 2.500 ? 20771 ? 0.014 8.0 0.079 ? 10.600 ? 1955 100.000 15 1 2.500 2.800 ? 18133 ? 0.014 8.4 0.074 ? 10.200 ? 1782 100.000 16 1 2.800 3.230 ? 17627 ? 0.014 8.8 0.068 ? 11.200 ? 1574 100.000 17 1 3.230 3.950 ? 15502 ? 0.014 11.0 0.055 ? 11.600 ? 1340 100.000 18 1 3.950 5.590 ? 12005 ? 0.014 11.5 0.052 ? 11.500 ? 1045 100.000 19 1 5.590 28.331 ? 6430 ? 0.014 9.1 0.064 ? 10.900 ? 590 99.100 20 1 # _refine.ls_percent_reflns_R_free 5.1000 _refine.overall_SU_B 1.1040 _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4JGL _refine.aniso_B[2][3] 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.0210 _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] 0.0000 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.aniso_B[3][3] -0.4300 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] 0.2900 _refine.pdbx_overall_ESU_R 0.0370 _refine.ls_R_factor_obs 0.1350 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct MAD _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.correlation_coeff_Fo_to_Fc 0.9800 _refine.ls_number_reflns_R_free 2515 _refine.correlation_coeff_Fo_to_Fc_free 0.9760 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 99.9500 _refine.ls_R_factor_R_work 0.1340 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.2500 _refine.pdbx_overall_ESU_R_Free 0.0350 _refine.B_iso_min 8.360 _refine.occupancy_min 0.100 _refine.B_iso_mean 18.7919 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] 0.2900 _refine.B_iso_max 54.620 _refine.ls_d_res_low 28.331 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.aniso_B[1][2] 0.1400 _refine.ls_R_factor_R_free 0.1530 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 49663 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. CALCIUM IONS (CA) AND 1,2-ETHANEDIOL (EDO) MOLECULES FROM THE CRYSTALLIZATION/CRYOPROTECTION SOLUTION ARE MODELED. 4. AN UNKNOWN LIAGAND (UNL) HAS BEEN MODELED AT THE SURFACE OF THE PROTEIN BASED ON THE ELECTRON DENSITY. THE DENSITY RESEMBLES NITROBENZENE (NBZ), BENZOIC ACID (BEZ) AND NICOTINIC ACID (NIO). THE EXACT CHEMICAL SPECIES COULD NOT BE DETERMINED WITH THE AVAILABLE DATA. ; _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1189 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 233 _refine_hist.number_atoms_total 1437 _refine_hist.d_res_high 1.2500 _refine_hist.d_res_low 28.331 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1334 0.017 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 903 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1825 1.407 1.980 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2221 0.796 3.002 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 179 6.757 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 62 28.866 24.839 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 224 12.784 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 19.910 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 189 0.079 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1541 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 278 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 809 2.250 3.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 326 1.349 3.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1320 3.437 5.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 525 4.056 8.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 493 5.767 11.000 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2237 1.728 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 247 7.009 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2190 3.529 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.2500 _refine_ls_shell.d_res_low 1.2820 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8300 _refine_ls_shell.number_reflns_R_work 3420 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2390 _refine_ls_shell.R_factor_R_free 0.2610 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 207 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3627 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a streptavidin-like protein (BACEGG_01519) from Bacteroides eggerthii DSM 20697 at 1.25 A resolution' _struct.entry_id 4JGL _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text ;an orphan, streptavidin-like fold with two extra alpha helices, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.entry_id 4JGL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 37 ? MSE A 41 ? ASP A 59 MSE A 63 5 ? 5 HELX_P HELX_P2 2 ASP A 141 ? ASP A 154 ? ASP A 163 ASP A 176 1 ? 14 HELX_P HELX_P3 3 CYS A 157 ? ASN A 166 ? CYS A 179 ASN A 188 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 35 SG A ? ? 1_555 A CYS 120 SG ? ? A CYS 57 A CYS 142 1_555 ? ? ? ? ? ? ? 2.086 ? ? covale1 covale both ? A LEU 25 C ? ? ? 1_555 A MSE 26 N ? ? A LEU 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale2 covale both ? A MSE 26 C ? ? ? 1_555 A PRO 27 N ? ? A MSE 48 A PRO 49 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A THR 40 C ? ? ? 1_555 A MSE 41 N ? ? A THR 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale4 covale both ? A MSE 41 C ? ? ? 1_555 A THR 42 N ? ? A MSE 63 A THR 64 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale5 covale both ? A LEU 48 C ? ? ? 1_555 A MSE 49 N ? ? A LEU 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale6 covale both ? A MSE 49 C ? ? ? 1_555 A PRO 50 N ? ? A MSE 71 A PRO 72 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? A LYS 57 C ? ? ? 1_555 A MSE 58 N ? ? A LYS 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? A MSE 58 C ? ? ? 1_555 A HIS 59 N ? ? A MSE 80 A HIS 81 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale9 covale both ? A VAL 73 C ? ? ? 1_555 A MSE 74 N ? ? A VAL 95 A MSE 96 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale10 covale both ? A MSE 74 C ? ? ? 1_555 A ASP 75 N ? ? A MSE 96 A ASP 97 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale11 covale both ? A VAL 87 C ? ? ? 1_555 A MSE 88 N ? ? A VAL 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? A MSE 88 C ? ? ? 1_555 A ILE 89 N ? ? A MSE 110 A ILE 111 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? A SER 105 C ? ? ? 1_555 A MSE 106 N ? ? A SER 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? A MSE 106 C ? ? ? 1_555 A LYS 107 N ? ? A MSE 128 A LYS 129 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? A THR 117 O ? ? ? 1_555 D CA . CA ? ? A THR 139 A CA 202 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc2 metalc ? ? A THR 117 OG1 ? ? ? 1_555 D CA . CA ? ? A THR 139 A CA 202 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc3 metalc ? ? A CYS 120 O ? ? ? 1_555 D CA . CA ? ? A CYS 142 A CA 202 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc4 metalc ? ? A GLU 121 OE2 A ? ? 1_555 C CA . CA ? ? A GLU 143 A CA 201 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc5 metalc ? ? A SER 123 O ? ? ? 1_555 D CA . CA ? ? A SER 145 A CA 202 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 201 A HOH 351 1_555 ? ? ? ? ? ? ? 2.443 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 201 A HOH 484 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 201 A HOH 485 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc9 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 202 A HOH 301 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 202 A HOH 309 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 202 A HOH 319 1_555 ? ? ? ? ? ? ? 2.388 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 28 ? ILE A 29 ? ALA A 50 ILE A 51 A 2 TYR A 135 ? GLY A 140 ? TYR A 157 GLY A 162 A 3 SER A 22 ? MSE A 26 ? SER A 44 MSE A 48 A 4 ASP A 44 ? MSE A 49 ? ASP A 66 MSE A 71 A 5 LEU A 54 ? ILE A 61 ? LEU A 76 ILE A 83 A 6 ALA A 64 ? ASP A 75 ? ALA A 86 ASP A 97 A 7 ASN A 78 ? ARG A 92 ? ASN A 100 ARG A 114 A 8 LYS A 96 ? LYS A 103 ? LYS A 118 LYS A 125 B 1 ALA A 28 ? ILE A 29 ? ALA A 50 ILE A 51 B 2 TYR A 135 ? GLY A 140 ? TYR A 157 GLY A 162 B 3 TYR A 125 ? ALA A 127 ? TYR A 147 ALA A 149 B 4 PHE A 112 ? PRO A 116 ? PHE A 134 PRO A 138 B 5 ASN A 78 ? ARG A 92 ? ASN A 100 ARG A 114 B 6 LYS A 96 ? LYS A 103 ? LYS A 118 LYS A 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 29 ? N ILE A 51 O TYR A 135 ? O TYR A 157 A 2 3 O CYS A 139 ? O CYS A 161 N LEU A 25 ? N LEU A 47 A 3 4 N TYR A 24 ? N TYR A 46 O GLY A 46 ? O GLY A 68 A 4 5 N TYR A 45 ? N TYR A 67 O MSE A 58 ? O MSE A 80 A 5 6 N LYS A 57 ? N LYS A 79 O ASN A 68 ? O ASN A 90 A 6 7 N ILE A 69 ? N ILE A 91 O HIS A 85 ? O HIS A 107 A 7 8 N PHE A 86 ? N PHE A 108 O LYS A 102 ? O LYS A 124 B 1 2 N ILE A 29 ? N ILE A 51 O TYR A 135 ? O TYR A 157 B 2 3 O LEU A 138 ? O LEU A 160 N TYR A 125 ? N TYR A 147 B 3 4 O VAL A 126 ? O VAL A 148 N ILE A 115 ? N ILE A 137 B 4 5 O PHE A 112 ? O PHE A 134 N CYS A 81 ? N CYS A 103 B 5 6 N PHE A 86 ? N PHE A 108 O LYS A 102 ? O LYS A 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 201 ? 6 'BINDING SITE FOR RESIDUE CA A 201' AC2 Software A CA 202 ? 6 'BINDING SITE FOR RESIDUE CA A 202' AC3 Software A EDO 203 ? 6 'BINDING SITE FOR RESIDUE EDO A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ILE A 99 ? ILE A 121 . ? 4_565 ? 2 AC1 6 GLU A 121 ? GLU A 143 . ? 1_555 ? 3 AC1 6 GLU A 159 ? GLU A 181 . ? 4_565 ? 4 AC1 6 HOH F . ? HOH A 351 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 484 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 485 . ? 1_555 ? 7 AC2 6 THR A 117 ? THR A 139 . ? 1_555 ? 8 AC2 6 CYS A 120 ? CYS A 142 . ? 1_555 ? 9 AC2 6 SER A 123 ? SER A 145 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 301 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH A 309 . ? 1_555 ? 12 AC2 6 HOH F . ? HOH A 319 . ? 1_555 ? 13 AC3 6 PHE A 152 ? PHE A 174 . ? 1_555 ? 14 AC3 6 LYS A 161 ? LYS A 183 . ? 1_555 ? 15 AC3 6 ASP A 165 ? ASP A 187 . ? 1_555 ? 16 AC3 6 HOH F . ? HOH A 352 . ? 1_555 ? 17 AC3 6 HOH F . ? HOH A 479 . ? 1_555 ? 18 AC3 6 HOH F . ? HOH A 507 . ? 1_555 ? # _atom_sites.entry_id 4JGL _atom_sites.fract_transf_matrix[1][1] 0.012607 _atom_sites.fract_transf_matrix[1][2] 0.007279 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014557 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019955 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLY 2 24 ? ? ? A . n A 1 3 ALA 3 25 ? ? ? A . n A 1 4 LYS 4 26 ? ? ? A . n A 1 5 LYS 5 27 ? ? ? A . n A 1 6 ASN 6 28 ? ? ? A . n A 1 7 VAL 7 29 ? ? ? A . n A 1 8 GLN 8 30 ? ? ? A . n A 1 9 ASP 9 31 ? ? ? A . n A 1 10 ALA 10 32 ? ? ? A . n A 1 11 GLU 11 33 ? ? ? A . n A 1 12 GLY 12 34 ? ? ? A . n A 1 13 GLN 13 35 ? ? ? A . n A 1 14 ALA 14 36 ? ? ? A . n A 1 15 GLU 15 37 ? ? ? A . n A 1 16 ALA 16 38 ? ? ? A . n A 1 17 GLY 17 39 ? ? ? A . n A 1 18 GLY 18 40 40 GLY GLY A . n A 1 19 ASN 19 41 41 ASN ASN A . n A 1 20 ALA 20 42 42 ALA ALA A . n A 1 21 PRO 21 43 43 PRO PRO A . n A 1 22 SER 22 44 44 SER SER A . n A 1 23 GLY 23 45 45 GLY GLY A . n A 1 24 TYR 24 46 46 TYR TYR A . n A 1 25 LEU 25 47 47 LEU LEU A . n A 1 26 MSE 26 48 48 MSE MSE A . n A 1 27 PRO 27 49 49 PRO PRO A . n A 1 28 ALA 28 50 50 ALA ALA A . n A 1 29 ILE 29 51 51 ILE ILE A . n A 1 30 SER 30 52 52 SER SER A . n A 1 31 ALA 31 53 53 ALA ALA A . n A 1 32 ASN 32 54 54 ASN ASN A . n A 1 33 ASN 33 55 55 ASN ASN A . n A 1 34 PHE 34 56 56 PHE PHE A . n A 1 35 CYS 35 57 57 CYS CYS A . n A 1 36 GLY 36 58 58 GLY GLY A . n A 1 37 ASP 37 59 59 ASP ASP A . n A 1 38 PHE 38 60 60 PHE PHE A . n A 1 39 THR 39 61 61 THR THR A . n A 1 40 THR 40 62 62 THR THR A . n A 1 41 MSE 41 63 63 MSE MSE A . n A 1 42 THR 42 64 64 THR THR A . n A 1 43 PRO 43 65 65 PRO PRO A . n A 1 44 ASP 44 66 66 ASP ASP A . n A 1 45 TYR 45 67 67 TYR TYR A . n A 1 46 GLY 46 68 68 GLY GLY A . n A 1 47 TYR 47 69 69 TYR TYR A . n A 1 48 LEU 48 70 70 LEU LEU A . n A 1 49 MSE 49 71 71 MSE MSE A . n A 1 50 PRO 50 72 72 PRO PRO A . n A 1 51 GLU 51 73 73 GLU GLU A . n A 1 52 LYS 52 74 74 LYS LYS A . n A 1 53 GLY 53 75 75 GLY GLY A . n A 1 54 LEU 54 76 76 LEU LEU A . n A 1 55 PHE 55 77 77 PHE PHE A . n A 1 56 LEU 56 78 78 LEU LEU A . n A 1 57 LYS 57 79 79 LYS LYS A . n A 1 58 MSE 58 80 80 MSE MSE A . n A 1 59 HIS 59 81 81 HIS HIS A . n A 1 60 ASP 60 82 82 ASP ASP A . n A 1 61 ILE 61 83 83 ILE ILE A . n A 1 62 ARG 62 84 84 ARG ARG A . n A 1 63 GLY 63 85 85 GLY GLY A . n A 1 64 ALA 64 86 86 ALA ALA A . n A 1 65 TYR 65 87 87 TYR TYR A . n A 1 66 GLY 66 88 88 GLY GLY A . n A 1 67 ILE 67 89 89 ILE ILE A . n A 1 68 ASN 68 90 90 ASN ASN A . n A 1 69 ILE 69 91 91 ILE ILE A . n A 1 70 TYR 70 92 92 TYR TYR A . n A 1 71 THR 71 93 93 THR THR A . n A 1 72 TYR 72 94 94 TYR TYR A . n A 1 73 VAL 73 95 95 VAL VAL A . n A 1 74 MSE 74 96 96 MSE MSE A . n A 1 75 ASP 75 97 97 ASP ASP A . n A 1 76 GLY 76 98 98 GLY GLY A . n A 1 77 ASP 77 99 99 ASP ASP A . n A 1 78 ASN 78 100 100 ASN ASN A . n A 1 79 ILE 79 101 101 ILE ILE A . n A 1 80 GLN 80 102 102 GLN GLN A . n A 1 81 CYS 81 103 103 CYS CYS A . n A 1 82 THR 82 104 104 THR THR A . n A 1 83 PRO 83 105 105 PRO PRO A . n A 1 84 GLY 84 106 106 GLY GLY A . n A 1 85 HIS 85 107 107 HIS HIS A . n A 1 86 PHE 86 108 108 PHE PHE A . n A 1 87 VAL 87 109 109 VAL VAL A . n A 1 88 MSE 88 110 110 MSE MSE A . n A 1 89 ILE 89 111 111 ILE ILE A . n A 1 90 VAL 90 112 112 VAL VAL A . n A 1 91 PRO 91 113 113 PRO PRO A . n A 1 92 ARG 92 114 114 ARG ARG A . n A 1 93 GLY 93 115 115 GLY GLY A . n A 1 94 GLY 94 116 116 GLY GLY A . n A 1 95 ASP 95 117 117 ASP ASP A . n A 1 96 LYS 96 118 118 LYS LYS A . n A 1 97 LEU 97 119 119 LEU LEU A . n A 1 98 GLU 98 120 120 GLU GLU A . n A 1 99 ILE 99 121 121 ILE ILE A . n A 1 100 THR 100 122 122 THR THR A . n A 1 101 ILE 101 123 123 ILE ILE A . n A 1 102 LYS 102 124 124 LYS LYS A . n A 1 103 LYS 103 125 125 LYS LYS A . n A 1 104 SER 104 126 126 SER SER A . n A 1 105 SER 105 127 127 SER SER A . n A 1 106 MSE 106 128 128 MSE MSE A . n A 1 107 LYS 107 129 129 LYS LYS A . n A 1 108 ASN 108 130 130 ASN ASN A . n A 1 109 THR 109 131 131 THR THR A . n A 1 110 PRO 110 132 132 PRO PRO A . n A 1 111 SER 111 133 133 SER SER A . n A 1 112 PHE 112 134 134 PHE PHE A . n A 1 113 THR 113 135 135 THR THR A . n A 1 114 PHE 114 136 136 PHE PHE A . n A 1 115 ILE 115 137 137 ILE ILE A . n A 1 116 PRO 116 138 138 PRO PRO A . n A 1 117 THR 117 139 139 THR THR A . n A 1 118 PRO 118 140 140 PRO PRO A . n A 1 119 ASP 119 141 141 ASP ASP A . n A 1 120 CYS 120 142 142 CYS CYS A . n A 1 121 GLU 121 143 143 GLU GLU A . n A 1 122 ASN 122 144 144 ASN ASN A . n A 1 123 SER 123 145 145 SER SER A . n A 1 124 ALA 124 146 146 ALA ALA A . n A 1 125 TYR 125 147 147 TYR TYR A . n A 1 126 VAL 126 148 148 VAL VAL A . n A 1 127 ALA 127 149 149 ALA ALA A . n A 1 128 THR 128 150 150 THR THR A . n A 1 129 GLU 129 151 151 GLU GLU A . n A 1 130 LYS 130 152 152 LYS LYS A . n A 1 131 VAL 131 153 153 VAL VAL A . n A 1 132 ALA 132 154 154 ALA ALA A . n A 1 133 GLY 133 155 155 GLY GLY A . n A 1 134 LYS 134 156 156 LYS LYS A . n A 1 135 TYR 135 157 157 TYR TYR A . n A 1 136 TYR 136 158 158 TYR TYR A . n A 1 137 TYR 137 159 159 TYR TYR A . n A 1 138 LEU 138 160 160 LEU LEU A . n A 1 139 CYS 139 161 161 CYS CYS A . n A 1 140 GLY 140 162 162 GLY GLY A . n A 1 141 ASP 141 163 163 ASP ASP A . n A 1 142 ALA 142 164 164 ALA ALA A . n A 1 143 GLU 143 165 165 GLU GLU A . n A 1 144 ALA 144 166 166 ALA ALA A . n A 1 145 ARG 145 167 167 ARG ARG A . n A 1 146 TYR 146 168 168 TYR TYR A . n A 1 147 LYS 147 169 169 LYS LYS A . n A 1 148 PHE 148 170 170 PHE PHE A . n A 1 149 GLU 149 171 171 GLU GLU A . n A 1 150 ASP 150 172 172 ASP ASP A . n A 1 151 LEU 151 173 173 LEU LEU A . n A 1 152 PHE 152 174 174 PHE PHE A . n A 1 153 GLU 153 175 175 GLU GLU A . n A 1 154 ASP 154 176 176 ASP ASP A . n A 1 155 GLU 155 177 177 GLU GLU A . n A 1 156 ARG 156 178 178 ARG ARG A . n A 1 157 CYS 157 179 179 CYS CYS A . n A 1 158 ALA 158 180 180 ALA ALA A . n A 1 159 GLU 159 181 181 GLU GLU A . n A 1 160 PHE 160 182 182 PHE PHE A . n A 1 161 LYS 161 183 183 LYS LYS A . n A 1 162 ASN 162 184 184 ASN ASN A . n A 1 163 LEU 163 185 185 LEU LEU A . n A 1 164 VAL 164 186 186 VAL VAL A . n A 1 165 ASP 165 187 187 ASP ASP A . n A 1 166 ASN 166 188 188 ASN ASN A . n A 1 167 TYR 167 189 189 TYR TYR A . n A 1 168 GLY 168 190 190 GLY GLY A . n A 1 169 LYS 169 191 191 LYS LYS A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 200 200 UNL UNL A . C 3 CA 1 201 201 CA CA A . D 3 CA 1 202 202 CA CA A . E 4 EDO 1 203 203 EDO EDO A . F 5 HOH 1 301 204 HOH HOH A . F 5 HOH 2 302 205 HOH HOH A . F 5 HOH 3 303 206 HOH HOH A . F 5 HOH 4 304 207 HOH HOH A . F 5 HOH 5 305 208 HOH HOH A . F 5 HOH 6 306 209 HOH HOH A . F 5 HOH 7 307 210 HOH HOH A . F 5 HOH 8 308 211 HOH HOH A . F 5 HOH 9 309 212 HOH HOH A . F 5 HOH 10 310 213 HOH HOH A . F 5 HOH 11 311 214 HOH HOH A . F 5 HOH 12 312 215 HOH HOH A . F 5 HOH 13 313 216 HOH HOH A . F 5 HOH 14 314 217 HOH HOH A . F 5 HOH 15 315 218 HOH HOH A . F 5 HOH 16 316 219 HOH HOH A . F 5 HOH 17 317 220 HOH HOH A . F 5 HOH 18 318 221 HOH HOH A . F 5 HOH 19 319 222 HOH HOH A . F 5 HOH 20 320 223 HOH HOH A . F 5 HOH 21 321 224 HOH HOH A . F 5 HOH 22 322 225 HOH HOH A . F 5 HOH 23 323 226 HOH HOH A . F 5 HOH 24 324 227 HOH HOH A . F 5 HOH 25 325 228 HOH HOH A . F 5 HOH 26 326 229 HOH HOH A . F 5 HOH 27 327 230 HOH HOH A . F 5 HOH 28 328 231 HOH HOH A . F 5 HOH 29 329 232 HOH HOH A . F 5 HOH 30 330 233 HOH HOH A . F 5 HOH 31 331 234 HOH HOH A . F 5 HOH 32 332 235 HOH HOH A . F 5 HOH 33 333 236 HOH HOH A . F 5 HOH 34 334 237 HOH HOH A . F 5 HOH 35 335 238 HOH HOH A . F 5 HOH 36 336 239 HOH HOH A . F 5 HOH 37 337 240 HOH HOH A . F 5 HOH 38 338 241 HOH HOH A . F 5 HOH 39 339 242 HOH HOH A . F 5 HOH 40 340 243 HOH HOH A . F 5 HOH 41 341 244 HOH HOH A . F 5 HOH 42 342 245 HOH HOH A . F 5 HOH 43 343 246 HOH HOH A . F 5 HOH 44 344 247 HOH HOH A . F 5 HOH 45 345 248 HOH HOH A . F 5 HOH 46 346 249 HOH HOH A . F 5 HOH 47 347 250 HOH HOH A . F 5 HOH 48 348 251 HOH HOH A . F 5 HOH 49 349 252 HOH HOH A . F 5 HOH 50 350 253 HOH HOH A . F 5 HOH 51 351 254 HOH HOH A . F 5 HOH 52 352 255 HOH HOH A . F 5 HOH 53 353 256 HOH HOH A . F 5 HOH 54 354 257 HOH HOH A . F 5 HOH 55 355 258 HOH HOH A . F 5 HOH 56 356 259 HOH HOH A . F 5 HOH 57 357 260 HOH HOH A . F 5 HOH 58 358 261 HOH HOH A . F 5 HOH 59 359 262 HOH HOH A . F 5 HOH 60 360 263 HOH HOH A . F 5 HOH 61 361 264 HOH HOH A . F 5 HOH 62 362 265 HOH HOH A . F 5 HOH 63 363 266 HOH HOH A . F 5 HOH 64 364 267 HOH HOH A . F 5 HOH 65 365 268 HOH HOH A . F 5 HOH 66 366 269 HOH HOH A . F 5 HOH 67 367 270 HOH HOH A . F 5 HOH 68 368 271 HOH HOH A . F 5 HOH 69 369 272 HOH HOH A . F 5 HOH 70 370 273 HOH HOH A . F 5 HOH 71 371 274 HOH HOH A . F 5 HOH 72 372 275 HOH HOH A . F 5 HOH 73 373 276 HOH HOH A . F 5 HOH 74 374 277 HOH HOH A . F 5 HOH 75 375 278 HOH HOH A . F 5 HOH 76 376 279 HOH HOH A . F 5 HOH 77 377 280 HOH HOH A . F 5 HOH 78 378 281 HOH HOH A . F 5 HOH 79 379 282 HOH HOH A . F 5 HOH 80 380 283 HOH HOH A . F 5 HOH 81 381 284 HOH HOH A . F 5 HOH 82 382 285 HOH HOH A . F 5 HOH 83 383 286 HOH HOH A . F 5 HOH 84 384 287 HOH HOH A . F 5 HOH 85 385 288 HOH HOH A . F 5 HOH 86 386 289 HOH HOH A . F 5 HOH 87 387 290 HOH HOH A . F 5 HOH 88 388 291 HOH HOH A . F 5 HOH 89 389 292 HOH HOH A . F 5 HOH 90 390 293 HOH HOH A . F 5 HOH 91 391 294 HOH HOH A . F 5 HOH 92 392 295 HOH HOH A . F 5 HOH 93 393 296 HOH HOH A . F 5 HOH 94 394 297 HOH HOH A . F 5 HOH 95 395 298 HOH HOH A . F 5 HOH 96 396 299 HOH HOH A . F 5 HOH 97 397 300 HOH HOH A . F 5 HOH 98 398 301 HOH HOH A . F 5 HOH 99 399 302 HOH HOH A . F 5 HOH 100 400 303 HOH HOH A . F 5 HOH 101 401 304 HOH HOH A . F 5 HOH 102 402 305 HOH HOH A . F 5 HOH 103 403 306 HOH HOH A . F 5 HOH 104 404 307 HOH HOH A . F 5 HOH 105 405 308 HOH HOH A . F 5 HOH 106 406 309 HOH HOH A . F 5 HOH 107 407 310 HOH HOH A . F 5 HOH 108 408 311 HOH HOH A . F 5 HOH 109 409 312 HOH HOH A . F 5 HOH 110 410 313 HOH HOH A . F 5 HOH 111 411 314 HOH HOH A . F 5 HOH 112 412 315 HOH HOH A . F 5 HOH 113 413 316 HOH HOH A . F 5 HOH 114 414 317 HOH HOH A . F 5 HOH 115 415 318 HOH HOH A . F 5 HOH 116 416 319 HOH HOH A . F 5 HOH 117 417 320 HOH HOH A . F 5 HOH 118 418 321 HOH HOH A . F 5 HOH 119 419 322 HOH HOH A . F 5 HOH 120 420 323 HOH HOH A . F 5 HOH 121 421 324 HOH HOH A . F 5 HOH 122 422 325 HOH HOH A . F 5 HOH 123 423 326 HOH HOH A . F 5 HOH 124 424 327 HOH HOH A . F 5 HOH 125 425 328 HOH HOH A . F 5 HOH 126 426 329 HOH HOH A . F 5 HOH 127 427 330 HOH HOH A . F 5 HOH 128 428 331 HOH HOH A . F 5 HOH 129 429 332 HOH HOH A . F 5 HOH 130 430 333 HOH HOH A . F 5 HOH 131 431 334 HOH HOH A . F 5 HOH 132 432 335 HOH HOH A . F 5 HOH 133 433 336 HOH HOH A . F 5 HOH 134 434 337 HOH HOH A . F 5 HOH 135 435 338 HOH HOH A . F 5 HOH 136 436 339 HOH HOH A . F 5 HOH 137 437 340 HOH HOH A . F 5 HOH 138 438 341 HOH HOH A . F 5 HOH 139 439 342 HOH HOH A . F 5 HOH 140 440 343 HOH HOH A . F 5 HOH 141 441 344 HOH HOH A . F 5 HOH 142 442 345 HOH HOH A . F 5 HOH 143 443 346 HOH HOH A . F 5 HOH 144 444 347 HOH HOH A . F 5 HOH 145 445 348 HOH HOH A . F 5 HOH 146 446 349 HOH HOH A . F 5 HOH 147 447 350 HOH HOH A . F 5 HOH 148 448 351 HOH HOH A . F 5 HOH 149 449 352 HOH HOH A . F 5 HOH 150 450 353 HOH HOH A . F 5 HOH 151 451 354 HOH HOH A . F 5 HOH 152 452 355 HOH HOH A . F 5 HOH 153 453 356 HOH HOH A . F 5 HOH 154 454 357 HOH HOH A . F 5 HOH 155 455 358 HOH HOH A . F 5 HOH 156 456 359 HOH HOH A . F 5 HOH 157 457 360 HOH HOH A . F 5 HOH 158 458 361 HOH HOH A . F 5 HOH 159 459 362 HOH HOH A . F 5 HOH 160 460 363 HOH HOH A . F 5 HOH 161 461 364 HOH HOH A . F 5 HOH 162 462 365 HOH HOH A . F 5 HOH 163 463 366 HOH HOH A . F 5 HOH 164 464 367 HOH HOH A . F 5 HOH 165 465 368 HOH HOH A . F 5 HOH 166 466 369 HOH HOH A . F 5 HOH 167 467 370 HOH HOH A . F 5 HOH 168 468 371 HOH HOH A . F 5 HOH 169 469 372 HOH HOH A . F 5 HOH 170 470 373 HOH HOH A . F 5 HOH 171 471 374 HOH HOH A . F 5 HOH 172 472 375 HOH HOH A . F 5 HOH 173 473 376 HOH HOH A . F 5 HOH 174 474 377 HOH HOH A . F 5 HOH 175 475 378 HOH HOH A . F 5 HOH 176 476 379 HOH HOH A . F 5 HOH 177 477 380 HOH HOH A . F 5 HOH 178 478 381 HOH HOH A . F 5 HOH 179 479 382 HOH HOH A . F 5 HOH 180 480 383 HOH HOH A . F 5 HOH 181 481 384 HOH HOH A . F 5 HOH 182 482 385 HOH HOH A . F 5 HOH 183 483 386 HOH HOH A . F 5 HOH 184 484 387 HOH HOH A . F 5 HOH 185 485 388 HOH HOH A . F 5 HOH 186 486 389 HOH HOH A . F 5 HOH 187 487 390 HOH HOH A . F 5 HOH 188 488 391 HOH HOH A . F 5 HOH 189 489 392 HOH HOH A . F 5 HOH 190 490 393 HOH HOH A . F 5 HOH 191 491 394 HOH HOH A . F 5 HOH 192 492 395 HOH HOH A . F 5 HOH 193 493 396 HOH HOH A . F 5 HOH 194 494 397 HOH HOH A . F 5 HOH 195 495 398 HOH HOH A . F 5 HOH 196 496 399 HOH HOH A . F 5 HOH 197 497 400 HOH HOH A . F 5 HOH 198 498 401 HOH HOH A . F 5 HOH 199 499 402 HOH HOH A . F 5 HOH 200 500 403 HOH HOH A . F 5 HOH 201 501 404 HOH HOH A . F 5 HOH 202 502 405 HOH HOH A . F 5 HOH 203 503 406 HOH HOH A . F 5 HOH 204 504 407 HOH HOH A . F 5 HOH 205 505 408 HOH HOH A . F 5 HOH 206 506 409 HOH HOH A . F 5 HOH 207 507 410 HOH HOH A . F 5 HOH 208 508 411 HOH HOH A . F 5 HOH 209 509 412 HOH HOH A . F 5 HOH 210 510 413 HOH HOH A . F 5 HOH 211 511 414 HOH HOH A . F 5 HOH 212 512 415 HOH HOH A . F 5 HOH 213 513 416 HOH HOH A . F 5 HOH 214 514 417 HOH HOH A . F 5 HOH 215 515 418 HOH HOH A . F 5 HOH 216 516 419 HOH HOH A . F 5 HOH 217 517 420 HOH HOH A . F 5 HOH 218 518 421 HOH HOH A . F 5 HOH 219 519 422 HOH HOH A . F 5 HOH 220 520 423 HOH HOH A . F 5 HOH 221 521 424 HOH HOH A . F 5 HOH 222 522 425 HOH HOH A . F 5 HOH 223 523 426 HOH HOH A . F 5 HOH 224 524 427 HOH HOH A . F 5 HOH 225 525 428 HOH HOH A . F 5 HOH 226 526 429 HOH HOH A . F 5 HOH 227 527 430 HOH HOH A . F 5 HOH 228 528 431 HOH HOH A . F 5 HOH 229 529 432 HOH HOH A . F 5 HOH 230 530 433 HOH HOH A . F 5 HOH 231 531 434 HOH HOH A . F 5 HOH 232 532 435 HOH HOH A . F 5 HOH 233 533 436 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 26 A MSE 48 ? MET SELENOMETHIONINE 2 A MSE 41 A MSE 63 ? MET SELENOMETHIONINE 3 A MSE 49 A MSE 71 ? MET SELENOMETHIONINE 4 A MSE 58 A MSE 80 ? MET SELENOMETHIONINE 5 A MSE 74 A MSE 96 ? MET SELENOMETHIONINE 6 A MSE 88 A MSE 110 ? MET SELENOMETHIONINE 7 A MSE 106 A MSE 128 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 OG1 ? A THR 117 ? A THR 139 ? 1_555 69.7 ? 2 O ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? A CYS 120 ? A CYS 142 ? 1_555 87.7 ? 3 OG1 ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? A CYS 120 ? A CYS 142 ? 1_555 96.6 ? 4 O ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? A SER 123 ? A SER 145 ? 1_555 137.6 ? 5 OG1 ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? A SER 123 ? A SER 145 ? 1_555 70.2 ? 6 O ? A CYS 120 ? A CYS 142 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? A SER 123 ? A SER 145 ? 1_555 84.0 ? 7 O ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 149.4 ? 8 OG1 ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 139.8 ? 9 O ? A CYS 120 ? A CYS 142 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 94.8 ? 10 O ? A SER 123 ? A SER 145 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 301 ? 1_555 72.9 ? 11 O ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 85.0 ? 12 OG1 ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 83.9 ? 13 O ? A CYS 120 ? A CYS 142 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 172.0 ? 14 O ? A SER 123 ? A SER 145 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 103.7 ? 15 O ? F HOH . ? A HOH 301 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 309 ? 1_555 89.9 ? 16 O ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 76.3 ? 17 OG1 ? A THR 117 ? A THR 139 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 145.9 ? 18 O ? A CYS 120 ? A CYS 142 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 84.3 ? 19 O ? A SER 123 ? A SER 145 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 143.2 ? 20 O ? F HOH . ? A HOH 301 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 73.6 ? 21 O ? F HOH . ? A HOH 309 ? 1_555 CA ? D CA . ? A CA 202 ? 1_555 O ? F HOH . ? A HOH 319 ? 1_555 90.7 ? 22 OE2 A A GLU 121 ? A GLU 143 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 351 ? 1_555 85.5 ? 23 OE2 A A GLU 121 ? A GLU 143 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 484 ? 1_555 88.5 ? 24 O ? F HOH . ? A HOH 351 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 484 ? 1_555 90.7 ? 25 OE2 A A GLU 121 ? A GLU 143 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 485 ? 1_555 74.2 ? 26 O ? F HOH . ? A HOH 351 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 485 ? 1_555 159.0 ? 27 O ? F HOH . ? A HOH 484 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? F HOH . ? A HOH 485 ? 1_555 94.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-03 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 5 'Structure model' '_struct_ref_seq_dif.details' 38 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC 5.5.0110 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 24-191 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4JGL _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 SE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 80 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 80 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.570 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation -0.380 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.059 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MSE _pdbx_validate_rmsd_angle.auth_seq_id_1 80 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MSE _pdbx_validate_rmsd_angle.auth_seq_id_2 80 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MSE _pdbx_validate_rmsd_angle.auth_seq_id_3 80 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 84.50 _pdbx_validate_rmsd_angle.angle_target_value 98.90 _pdbx_validate_rmsd_angle.angle_deviation -14.40 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 139 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -117.67 _pdbx_validate_torsion.psi 78.39 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 118 ? CD ? A LYS 96 CD 2 1 Y 1 A LYS 118 ? CE ? A LYS 96 CE 3 1 Y 1 A LYS 118 ? NZ ? A LYS 96 NZ 4 1 Y 1 A GLU 177 ? CG ? A GLU 155 CG 5 1 Y 1 A GLU 177 ? CD ? A GLU 155 CD 6 1 Y 1 A GLU 177 ? OE1 ? A GLU 155 OE1 7 1 Y 1 A GLU 177 ? OE2 ? A GLU 155 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLY 24 ? A GLY 2 3 1 Y 1 A ALA 25 ? A ALA 3 4 1 Y 1 A LYS 26 ? A LYS 4 5 1 Y 1 A LYS 27 ? A LYS 5 6 1 Y 1 A ASN 28 ? A ASN 6 7 1 Y 1 A VAL 29 ? A VAL 7 8 1 Y 1 A GLN 30 ? A GLN 8 9 1 Y 1 A ASP 31 ? A ASP 9 10 1 Y 1 A ALA 32 ? A ALA 10 11 1 Y 1 A GLU 33 ? A GLU 11 12 1 Y 1 A GLY 34 ? A GLY 12 13 1 Y 1 A GLN 35 ? A GLN 13 14 1 Y 1 A ALA 36 ? A ALA 14 15 1 Y 1 A GLU 37 ? A GLU 15 16 1 Y 1 A ALA 38 ? A ALA 16 17 1 Y 1 A GLY 39 ? A GLY 17 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 'CALCIUM ION' CA 4 1,2-ETHANEDIOL EDO 5 water HOH #