HEADER METAL BINDING PROTEIN 03-MAR-13 4JGU TITLE CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLH COLLAGENASE TITLE 2 POLYCYSTIC KIDNEY-DISEASE-LIKE DOMAIN 2B AT 1.4 ANGSTROM RESOLUTION TITLE 3 IN THE PRESENCE OF CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLH PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PKD-LIKE DOMAIN, UNP RESIDUES 806-900; COMPND 5 SYNONYM: COLLAGENASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM HISTOLYTICUM; SOURCE 3 ORGANISM_TAXID: 1498; SOURCE 4 GENE: COLH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS IG-LIKE FOLD, BETA-SANDWICH, CALCIUM BINDING PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.BAUER,O.MATSUSHITA,J.SAKON REVDAT 5 08-NOV-23 4JGU 1 REMARK LINK REVDAT 4 25-DEC-19 4JGU 1 JRNL REVDAT 3 18-MAR-15 4JGU 1 JRNL REVDAT 2 25-FEB-15 4JGU 1 TITLE REVDAT 1 05-MAR-14 4JGU 0 JRNL AUTH R.BAUER,K.JANOWSKA,K.TAYLOR,B.JORDAN,S.GANN,T.JANOWSKI, JRNL AUTH 2 E.C.LATIMER,O.MATSUSHITA,J.SAKON JRNL TITL STRUCTURES OF THREE POLYCYSTIC KIDNEY DISEASE-LIKE DOMAINS JRNL TITL 2 FROM CLOSTRIDIUM HISTOLYTICUM COLLAGENASES COLG AND COLH. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 565 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25760606 JRNL DOI 10.1107/S1399004714027722 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 35993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.633 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1549 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2087 ; 1.737 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 6.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;43.772 ;25.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 287 ;10.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;24.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 218 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1148 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 634 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1036 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.047 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.131 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.096 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 943 ; 2.882 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1533 ; 3.916 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 606 ; 5.405 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 553 ; 7.177 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1537 ; 2.771 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36663 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 22.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: 3JQU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (W/V) PEG 5000, 0.2M AMMONIUM REMARK 280 SULFATE, 0.1M MES PH6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.43450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1041 O HOH A 1174 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 806 CB SER A 806 OG -0.102 REMARK 500 SER B 806 CB SER B 806 OG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 774 OD1 REMARK 620 2 LYS A 775 O 83.2 REMARK 620 3 ASP A 802 OD2 146.1 129.1 REMARK 620 4 ASP A 802 OD1 158.5 80.3 54.1 REMARK 620 5 ASP A 804 OD1 87.9 92.9 98.9 79.4 REMARK 620 6 ASP A 844 OD2 87.3 80.0 88.7 103.1 171.9 REMARK 620 7 HOH A1001 O 74.8 154.2 71.4 124.2 99.3 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 774 OD1 REMARK 620 2 LYS B 775 O 81.3 REMARK 620 3 ASP B 802 OD2 148.3 129.6 REMARK 620 4 ASP B 802 OD1 157.1 81.8 52.5 REMARK 620 5 ASP B 804 OD1 86.5 93.2 97.2 79.0 REMARK 620 6 ASP B 844 OD2 89.1 81.0 89.2 103.4 173.3 REMARK 620 7 HOH B1001 O 76.5 153.6 71.8 123.2 99.4 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y72 RELATED DB: PDB REMARK 900 PKD-LIKE DOMAIN FROM COLG COLLAGENASE AT 1.4 ANGSTROM REMARK 900 RELATED ID: 3JQU RELATED DB: PDB REMARK 900 PKD-LIKE DOMAIN FROM COLG COLLAGENASE AT 1.4 ANGSTROM REMARK 900 RELATED ID: 3JS7 RELATED DB: PDB REMARK 900 PKD-LIKE DOMAIN FROM COLG COLLAGENASE AT 1.6 ANGSTROM REMARK 900 RELATED ID: 3JQW RELATED DB: PDB REMARK 900 CBD FROM COLH COLLAGENASE IN THE PRESENCE OF CALCIUM REMARK 900 RELATED ID: 3JQX RELATED DB: PDB REMARK 900 CBD FROM COLH COLLAGENASE IN THE PRESENCE OF CALCIUM AND CADMIUM DBREF 4JGU A 766 860 UNP Q46085 Q46085_CLOHI 806 900 DBREF 4JGU B 766 860 UNP Q46085 Q46085_CLOHI 806 900 SEQRES 1 A 95 ALA GLU ILE LYS ASP LEU SER GLU ASN LYS LEU PRO VAL SEQRES 2 A 95 ILE TYR MET HIS VAL PRO LYS SER GLY ALA LEU ASN GLN SEQRES 3 A 95 LYS VAL VAL PHE TYR GLY LYS GLY THR TYR ASP PRO ASP SEQRES 4 A 95 GLY SER ILE ALA GLY TYR GLN TRP ASP PHE GLY ASP GLY SEQRES 5 A 95 SER ASP PHE SER SER GLU GLN ASN PRO SER HIS VAL TYR SEQRES 6 A 95 THR LYS LYS GLY GLU TYR THR VAL THR LEU ARG VAL MET SEQRES 7 A 95 ASP SER SER GLY GLN MET SER GLU LYS THR MET LYS ILE SEQRES 8 A 95 LYS ILE THR ASP SEQRES 1 B 95 ALA GLU ILE LYS ASP LEU SER GLU ASN LYS LEU PRO VAL SEQRES 2 B 95 ILE TYR MET HIS VAL PRO LYS SER GLY ALA LEU ASN GLN SEQRES 3 B 95 LYS VAL VAL PHE TYR GLY LYS GLY THR TYR ASP PRO ASP SEQRES 4 B 95 GLY SER ILE ALA GLY TYR GLN TRP ASP PHE GLY ASP GLY SEQRES 5 B 95 SER ASP PHE SER SER GLU GLN ASN PRO SER HIS VAL TYR SEQRES 6 B 95 THR LYS LYS GLY GLU TYR THR VAL THR LEU ARG VAL MET SEQRES 7 B 95 ASP SER SER GLY GLN MET SER GLU LYS THR MET LYS ILE SEQRES 8 B 95 LYS ILE THR ASP HET CA A 901 1 HET SO4 A 902 5 HET SO4 A 903 5 HET CA B 901 1 HET SO4 B 902 5 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 3 CA 2(CA 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *362(H2 O) HELIX 1 1 ASP A 770 ASN A 774 5 5 HELIX 2 2 ASP B 770 ASN B 774 5 5 SHEET 1 A 4 SER A 786 ALA A 788 0 SHEET 2 A 4 MET A 849 THR A 859 1 O THR A 859 N GLY A 787 SHEET 3 A 4 GLY A 834 ASP A 844 -1 N GLY A 834 O ILE A 858 SHEET 4 A 4 ILE A 807 ASP A 813 -1 N ASP A 813 O THR A 839 SHEET 1 B 2 LYS A 792 VAL A 794 0 SHEET 2 B 2 SER A 827 VAL A 829 -1 O HIS A 828 N VAL A 793 SHEET 1 C 4 SER B 786 ALA B 788 0 SHEET 2 C 4 MET B 849 THR B 859 1 O THR B 859 N GLY B 787 SHEET 3 C 4 GLY B 834 ASP B 844 -1 N GLY B 834 O ILE B 858 SHEET 4 C 4 ILE B 807 ASP B 813 -1 N ASP B 813 O THR B 839 SHEET 1 D 2 LYS B 792 VAL B 794 0 SHEET 2 D 2 SER B 827 VAL B 829 -1 O HIS B 828 N VAL B 793 LINK OD1 ASN A 774 CA CA A 901 1555 1555 2.41 LINK O LYS A 775 CA CA A 901 1555 1555 2.39 LINK OD2 ASP A 802 CA CA A 901 1555 1555 2.42 LINK OD1 ASP A 802 CA CA A 901 1555 1555 2.43 LINK OD1 ASP A 804 CA CA A 901 1555 1555 2.32 LINK OD2 ASP A 844 CA CA A 901 1555 1555 2.43 LINK CA CA A 901 O HOH A1001 1555 1555 2.47 LINK OD1 ASN B 774 CA CA B 901 1555 1555 2.40 LINK O LYS B 775 CA CA B 901 1555 1555 2.39 LINK OD2 ASP B 802 CA CA B 901 1555 1555 2.46 LINK OD1 ASP B 802 CA CA B 901 1555 1555 2.47 LINK OD1 ASP B 804 CA CA B 901 1555 1555 2.34 LINK OD2 ASP B 844 CA CA B 901 1555 1555 2.37 LINK CA CA B 901 O HOH B1001 1555 1555 2.39 SITE 1 AC1 6 ASN A 774 LYS A 775 ASP A 802 ASP A 804 SITE 2 AC1 6 ASP A 844 HOH A1001 SITE 1 AC2 6 SER A 818 HIS A 828 HOH A1024 HOH A1044 SITE 2 AC2 6 HOH A1053 HOH A1087 SITE 1 AC3 2 LYS A 852 HOH A1051 SITE 1 AC4 6 ASN B 774 LYS B 775 ASP B 802 ASP B 804 SITE 2 AC4 6 ASP B 844 HOH B1001 SITE 1 AC5 2 HOH B1022 HOH B1048 CRYST1 49.387 38.869 54.657 90.00 98.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020248 0.000000 0.003001 0.00000 SCALE2 0.000000 0.025727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018496 0.00000