HEADER BIOTIN-BINDING PROTEIN 05-MAR-13 4JHQ TITLE CRYSTAL STRUCTURE OF AVIDIN - 6-(6-BIOTINAMIDOHEXANAMIDO) TITLE 2 HEXANOYLFERROCENE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIDIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 SECRETION: EGG WHITE KEYWDS BETA BARREL, BIOTIN-BINDING PROTEIN, 6-(6-BIOTINAMIDOHEXANAMIDO) KEYWDS 2 HEXANOYLFERROCENE, GLYCOPROTEIN, HEN EGG WHITE EXPDTA X-RAY DIFFRACTION AUTHOR P.STRZELCZYK,A.BUJACZ,G.BUJACZ REVDAT 3 08-NOV-23 4JHQ 1 HETSYN REVDAT 2 29-JUL-20 4JHQ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 20-NOV-13 4JHQ 0 JRNL AUTH D.PLAZUK,J.ZAKRZEWSKI,M.SALMAIN,A.BLAUZ,B.RYCHLIK, JRNL AUTH 2 P.STRZELCZYK,A.BUJACZ,G.BUJACZ JRNL TITL FERROCENE-BIOTIN CONJUGATES TARGETING CANCER CELLS: JRNL TITL 2 SYNTHESIS, INTERACTION WITH AVIDIN, CYTOTOXIC PROPERTIES AND JRNL TITL 3 THE CRYSTAL STRUCTURE OF THE COMPLEX OF AVIDIN WITH A JRNL TITL 4 BIOTIN-LINKER-FERROCENE CONJUGATE JRNL REF ORGANOMETALLICS V. 32 5774 2013 JRNL REFN ISSN 0276-7333 JRNL DOI 10.1021/OM4003126 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 15221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 909 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.76000 REMARK 3 B22 (A**2) : -2.21000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2165 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3073 ; 1.957 ; 2.048 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 7.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;35.213 ;23.678 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 348 ;17.048 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1563 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 123 B 2 123 139 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 5.5206 -19.7866 3.7108 REMARK 3 T TENSOR REMARK 3 T11: 0.0801 T22: 0.0311 REMARK 3 T33: 0.0817 T12: 0.0272 REMARK 3 T13: 0.0008 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.4600 L22: 2.1602 REMARK 3 L33: 2.6816 L12: 0.1289 REMARK 3 L13: -0.5542 L23: 0.0480 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0419 S13: -0.1206 REMARK 3 S21: 0.0286 S22: 0.0309 S23: 0.0217 REMARK 3 S31: 0.1770 S32: -0.0353 S33: -0.0546 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3786 -15.8656 10.7978 REMARK 3 T TENSOR REMARK 3 T11: 0.1562 T22: 0.0859 REMARK 3 T33: 0.1139 T12: 0.0177 REMARK 3 T13: 0.0040 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.4669 L22: 0.6499 REMARK 3 L33: 0.9956 L12: -0.3237 REMARK 3 L13: -0.1680 L23: 0.7262 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0058 S13: -0.1449 REMARK 3 S21: 0.1651 S22: 0.0267 S23: 0.0204 REMARK 3 S31: 0.2617 S32: 0.0473 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5194 -4.4114 0.2367 REMARK 3 T TENSOR REMARK 3 T11: 0.0770 T22: 0.0909 REMARK 3 T33: 0.0212 T12: 0.0027 REMARK 3 T13: -0.0018 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.1018 L22: 2.7767 REMARK 3 L33: 0.6038 L12: -0.5901 REMARK 3 L13: 0.3018 L23: -0.2514 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: 0.1915 S13: 0.0375 REMARK 3 S21: -0.0005 S22: 0.0765 S23: 0.0544 REMARK 3 S31: -0.0156 S32: -0.0964 S33: -0.0319 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6625 1.1399 11.2923 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0827 REMARK 3 T33: 0.0420 T12: -0.0087 REMARK 3 T13: 0.0216 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.6416 L22: 2.4135 REMARK 3 L33: 3.3049 L12: 0.2336 REMARK 3 L13: 0.4752 L23: -0.2004 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: -0.1552 S13: -0.0337 REMARK 3 S21: 0.2397 S22: -0.0698 S23: 0.2196 REMARK 3 S31: 0.0787 S32: -0.3196 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 95 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0843 2.6445 4.2141 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0865 REMARK 3 T33: 0.0384 T12: -0.0032 REMARK 3 T13: 0.0017 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.7314 L22: 0.8919 REMARK 3 L33: 0.6214 L12: -0.1692 REMARK 3 L13: 0.1456 L23: 0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0560 S13: -0.0474 REMARK 3 S21: 0.0734 S22: -0.0136 S23: 0.1537 REMARK 3 S31: 0.0528 S32: -0.2185 S33: 0.0017 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8454 2.8272 14.5568 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.0591 REMARK 3 T33: 0.0060 T12: 0.0115 REMARK 3 T13: -0.0077 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.6557 L22: 0.9833 REMARK 3 L33: 0.7609 L12: -0.0666 REMARK 3 L13: 0.5971 L23: 0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.1840 S13: -0.0219 REMARK 3 S21: 0.2699 S22: 0.0188 S23: -0.0163 REMARK 3 S31: 0.0586 S32: -0.0563 S33: 0.0134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4JHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16061 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YVO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% MME PEG 5K, 0.2M MAGNESIUM REMARK 280 FORMATE, 0.1M BIS-TRIS, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.84650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.32800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.84650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.32800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLN A 126 REMARK 465 LYS A 127 REMARK 465 GLU A 128 REMARK 465 ALA B 1 REMARK 465 THR B 125 REMARK 465 GLN B 126 REMARK 465 LYS B 127 REMARK 465 GLU B 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 17 C1 NAG B 202 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 59.40 36.01 REMARK 500 LYS B 58 57.98 32.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AVI RELATED DB: PDB REMARK 900 AVIDIN - BIOTIN COMPLEX REMARK 900 RELATED ID: 4I60 RELATED DB: PDB REMARK 900 AVIDIN - BIOTINYLRUTHENOCENE COMPLEX REMARK 900 RELATED ID: 1VYO RELATED DB: PDB REMARK 900 AVIDIN APO-FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE EXPERIMENTAL INFO OF UNIPROT (P02701, AVID_CHICK) SHOWS R-> K REMARK 999 AT POSITION 50, I -> T AT POSITION 58. DBREF 4JHQ A 1 128 UNP P02701 AVID_CHICK 25 152 DBREF 4JHQ B 1 128 UNP P02701 AVID_CHICK 25 152 SEQADV 4JHQ LYS A 26 UNP P02701 ARG 50 SEE REMARK 999 SEQADV 4JHQ THR A 34 UNP P02701 ILE 58 SEE REMARK 999 SEQADV 4JHQ LYS B 26 UNP P02701 ARG 50 SEE REMARK 999 SEQADV 4JHQ THR B 34 UNP P02701 ILE 58 SEE REMARK 999 SEQRES 1 A 128 ALA ARG LYS CYS SER LEU THR GLY LYS TRP THR ASN ASP SEQRES 2 A 128 LEU GLY SER ASN MET THR ILE GLY ALA VAL ASN SER LYS SEQRES 3 A 128 GLY GLU PHE THR GLY THR TYR THR THR ALA VAL THR ALA SEQRES 4 A 128 THR SER ASN GLU ILE LYS GLU SER PRO LEU HIS GLY THR SEQRES 5 A 128 GLN ASN THR ILE ASN LYS ARG THR GLN PRO THR PHE GLY SEQRES 6 A 128 PHE THR VAL ASN TRP LYS PHE SER GLU SER THR THR VAL SEQRES 7 A 128 PHE THR GLY GLN CYS PHE ILE ASP ARG ASN GLY LYS GLU SEQRES 8 A 128 VAL LEU LYS THR MET TRP LEU LEU ARG SER SER VAL ASN SEQRES 9 A 128 ASP ILE GLY ASP ASP TRP LYS ALA THR ARG VAL GLY ILE SEQRES 10 A 128 ASN ILE PHE THR ARG LEU ARG THR GLN LYS GLU SEQRES 1 B 128 ALA ARG LYS CYS SER LEU THR GLY LYS TRP THR ASN ASP SEQRES 2 B 128 LEU GLY SER ASN MET THR ILE GLY ALA VAL ASN SER LYS SEQRES 3 B 128 GLY GLU PHE THR GLY THR TYR THR THR ALA VAL THR ALA SEQRES 4 B 128 THR SER ASN GLU ILE LYS GLU SER PRO LEU HIS GLY THR SEQRES 5 B 128 GLN ASN THR ILE ASN LYS ARG THR GLN PRO THR PHE GLY SEQRES 6 B 128 PHE THR VAL ASN TRP LYS PHE SER GLU SER THR THR VAL SEQRES 7 B 128 PHE THR GLY GLN CYS PHE ILE ASP ARG ASN GLY LYS GLU SEQRES 8 B 128 VAL LEU LYS THR MET TRP LEU LEU ARG SER SER VAL ASN SEQRES 9 B 128 ASP ILE GLY ASP ASP TRP LYS ALA THR ARG VAL GLY ILE SEQRES 10 B 128 ASN ILE PHE THR ARG LEU ARG THR GLN LYS GLU MODRES 4JHQ ASN A 17 ASN GLYCOSYLATION SITE HET B6F A 201 42 HET NAG A 202 14 HET B6F B 201 74 HET NAG B 202 14 HETNAM B6F [(1,2,3,4,5-ETA)-CYCLOPENTADIENYL][(1,2,3,4,5-ETA)-{6- HETNAM 2 B6F [(6-{[5-(2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4- HETNAM 3 B6F YL)PENTANOYL]AMINO}HEXANOYL) HETNAM 4 B6F AMINO]HEXANOYL}CYCLOPENTADIENYL]IRON HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 B6F 2(C32 H38 FE N4 O4 S) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 7 HOH *82(H2 O) HELIX 1 1 THR A 55 ARG A 59 5 5 HELIX 2 2 ASP A 105 LYS A 111 5 7 HELIX 3 3 THR B 55 ARG B 59 5 5 HELIX 4 4 ASP B 105 LYS B 111 5 7 SHEET 1 A 9 GLY A 8 ASN A 12 0 SHEET 2 A 9 ASN A 17 ILE A 20 -1 O MET A 18 N TRP A 10 SHEET 3 A 9 GLU A 28 THR A 34 -1 O THR A 34 N ASN A 17 SHEET 4 A 9 SER A 47 GLN A 53 -1 O SER A 47 N TYR A 33 SHEET 5 A 9 THR A 63 ASN A 69 -1 O THR A 67 N HIS A 50 SHEET 6 A 9 THR A 76 ILE A 85 -1 O THR A 77 N VAL A 68 SHEET 7 A 9 GLU A 91 ARG A 100 -1 O ARG A 100 N THR A 76 SHEET 8 A 9 THR A 113 ARG A 122 -1 O ARG A 114 N LEU A 99 SHEET 9 A 9 GLY A 8 ASN A 12 -1 N THR A 11 O THR A 121 SHEET 1 B 9 GLY B 8 ASN B 12 0 SHEET 2 B 9 ASN B 17 ILE B 20 -1 O MET B 18 N TRP B 10 SHEET 3 B 9 GLU B 28 ALA B 36 -1 O THR B 34 N ASN B 17 SHEET 4 B 9 ILE B 44 GLN B 53 -1 O SER B 47 N TYR B 33 SHEET 5 B 9 THR B 63 ASN B 69 -1 O GLY B 65 N THR B 52 SHEET 6 B 9 THR B 76 ILE B 85 -1 O THR B 77 N VAL B 68 SHEET 7 B 9 GLU B 91 ARG B 100 -1 O VAL B 92 N PHE B 84 SHEET 8 B 9 THR B 113 ARG B 122 -1 O PHE B 120 N LEU B 93 SHEET 9 B 9 GLY B 8 ASN B 12 -1 N THR B 11 O THR B 121 SSBOND 1 CYS A 4 CYS A 83 1555 1555 1.98 SSBOND 2 CYS B 4 CYS B 83 1555 1555 2.00 LINK ND2 ASN A 17 C1 NAG A 202 1555 1555 1.53 CRYST1 69.693 78.656 42.762 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023385 0.00000