HEADER OXIDOREDUCTASE 05-MAR-13 4JHU TITLE T2-DEPLETED LACCASE FROM CORIOLOPSIS CAPERATA SOAKED WITH CUCL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORIOLOPSIS CAPERATA; SOURCE 3 ORGANISM_TAXID: 195176 KEYWDS BETA SHEET, 4-COPPER PROTEIN, METAL-BINDING, OXIDOREDUCTASE, LACCASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.POLYAKOV,T.V.FEDOROVA,O.A.GLAZUNOVA,S.A.KURZEEV,L.G.MALOSHENOK, AUTHOR 2 O.A.KOROLEVA REVDAT 4 20-NOV-24 4JHU 1 HETSYN REVDAT 3 29-JUL-20 4JHU 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 24-JUN-15 4JHU 1 JRNL REVDAT 1 23-APR-14 4JHU 0 JRNL AUTH O.A.GLAZUNOVA,K.M.POLYAKOV,T.V.FEDOROVA,P.V.DOROVATOVSKII, JRNL AUTH 2 O.V.KOROLEVA JRNL TITL ELUCIDATION OF THE CRYSTAL STRUCTURE OF CORIOLOPSIS CAPERATA JRNL TITL 2 LACCASE: RESTORATION OF THE STRUCTURE AND ACTIVITY OF THE JRNL TITL 3 NATIVE ENZYME FROM THE T2-DEPLETED FORM BY COPPER IONS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 854 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25849396 JRNL DOI 10.1107/S1399004715001595 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 46762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.47000 REMARK 3 B22 (A**2) : -0.70000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4007 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5471 ; 1.956 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 7.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;37.314 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;12.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3136 ; 0.012 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4 ; 4.818 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1 M HEPES, HANGING REMARK 280 DROP, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.06000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.06000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CU CU A 515 O HOH A 930 1.67 REMARK 500 O HOH A 815 O HOH A 873 2.13 REMARK 500 O HOH A 751 O HOH A 803 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 142 OE1 GLU A 308 4545 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 142 CG ASP A 142 OD2 0.150 REMARK 500 GLU A 308 CD GLU A 308 OE1 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 142 CB - CG - OD1 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 441 CB - CG - OD1 ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP A 441 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 119.68 76.32 REMARK 500 SER A 113 -135.43 50.51 REMARK 500 ARG A 121 127.29 -171.96 REMARK 500 THR A 179 55.46 -140.14 REMARK 500 ASP A 205 -70.40 -155.99 REMARK 500 ALA A 240 -6.92 87.97 REMARK 500 PRO A 316 48.34 -72.59 REMARK 500 ASN A 418 49.49 -149.18 REMARK 500 ASN A 475 63.16 -119.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 518 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 509 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HOH A 888 O 94.4 REMARK 620 3 HOH A 925 O 95.0 96.3 REMARK 620 4 HOH A 926 O 169.1 89.5 74.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HIS A 397 NE2 168.9 REMARK 620 3 HOH A 603 O 96.5 94.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 140.7 REMARK 620 3 HIS A 451 NE2 113.2 105.1 REMARK 620 4 HOH A 934 O 108.2 90.7 73.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 517 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 91 ND1 REMARK 620 2 HOH A 765 O 111.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 399 NE2 116.4 REMARK 620 3 HIS A 449 NE2 118.1 121.9 REMARK 620 4 HOH A 934 O 92.5 93.3 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 513 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 OD2 REMARK 620 2 ASP A 183 OD1 52.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 516 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 322 OD1 REMARK 620 2 HOH A 931 O 95.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 511 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 378 OD2 REMARK 620 2 HOH A 883 O 101.2 REMARK 620 3 HOH A 935 O 84.3 154.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 394 ND1 REMARK 620 2 CYS A 450 SG 123.8 REMARK 620 3 HIS A 455 ND1 105.6 130.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 510 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 401 ND1 REMARK 620 2 ASP A 441 OD1 104.1 REMARK 620 3 CU A 514 CU 164.1 73.8 REMARK 620 4 HOH A 658 O 101.5 87.0 94.2 REMARK 620 5 HOH A 887 O 120.8 134.1 60.5 92.4 REMARK 620 6 HOH A 895 O 86.3 99.9 78.7 168.1 75.9 REMARK 620 7 HOH A 939 O 150.3 103.8 39.7 70.3 35.4 98.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 514 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 441 OD2 REMARK 620 2 HOH A 887 O 147.2 REMARK 620 3 HOH A 911 O 99.1 100.8 REMARK 620 4 HOH A 939 O 134.6 32.7 74.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 515 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 495 OD2 REMARK 620 2 HOH A 927 O 163.4 REMARK 620 3 HOH A 928 O 87.2 108.8 REMARK 620 4 HOH A 929 O 91.9 88.9 102.3 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JHV RELATED DB: PDB DBREF 4JHU A 1 496 PDB 4JHU 4JHU 1 496 SEQRES 1 A 496 GLY ILE GLY PRO VAL THR ASP LEU THR ILE SER ASP GLY SEQRES 2 A 496 PRO VAL SER PRO ASP GLY PHE THR ARG GLN ALA ILE LEU SEQRES 3 A 496 VAL ASN ASN GLN PHE PRO SER PRO LEU ILE THR GLY ASN SEQRES 4 A 496 LYS GLY ASP ARG PHE GLN LEU ASN VAL ILE ASP ASN MET SEQRES 5 A 496 ASN ASN HIS THR MET LEU LYS SER THR SER ILE HIS TRP SEQRES 6 A 496 HIS GLY PHE PHE GLN HIS GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 496 PRO ALA PHE VAL ASN GLN CYS PRO ILE SER PRO GLY HIS SEQRES 8 A 496 SER PHE LEU TYR ASP PHE GLN VAL PRO ASP GLN ALA GLY SEQRES 9 A 496 THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 496 ASP GLY LEU ARG GLY PRO ILE VAL VAL TYR ASP PRO GLN SEQRES 11 A 496 ASP PRO HIS LYS ASP LEU TYR ASP VAL ASP ASP ASP SER SEQRES 12 A 496 THR VAL ILE THR LEU ALA ASP TRP TYR HIS LEU ALA ALA SEQRES 13 A 496 LYS VAL GLY PRO ALA VAL PRO THR ALA ASP ALA THR LEU SEQRES 14 A 496 ILE ASN GLY LEU GLY ARG SER ILE SER THR LEU ASN ALA SEQRES 15 A 496 ASP LEU ALA VAL ILE SER VAL THR LYS GLY LYS ARG TYR SEQRES 16 A 496 ARG PHE ARG LEU VAL SER LEU SER CYS ASP PRO ASN HIS SEQRES 17 A 496 THR PHE SER ILE ASP GLY HIS THR MET THR VAL ILE GLU SEQRES 18 A 496 ALA ASP SER VAL ASN LEU LYS PRO GLN VAL VAL ASP SER SEQRES 19 A 496 ILE GLN ILE PHE ALA ALA GLN ARG TYR SER PHE VAL LEU SEQRES 20 A 496 ASN ALA ASP GLN ASP ILE GLY ASN TYR TRP ILE ARG ALA SEQRES 21 A 496 MET PRO ASN SER GLY THR ARG ASN PHE ASP GLY GLY VAL SEQRES 22 A 496 ASN SER ALA ILE LEU ARG TYR ASP GLY ALA ASP PRO VAL SEQRES 23 A 496 GLU PRO THR THR THR GLN THR PRO SER SER GLN PRO LEU SEQRES 24 A 496 VAL GLU SER ALA LEU THR THR LEU GLU GLY THR ALA ALA SEQRES 25 A 496 PRO GLY SER PRO THR ALA GLY GLY VAL ASP LEU ALA ILE SEQRES 26 A 496 ASN MET ALA PHE GLY PHE ALA GLY GLY ARG PHE THR ILE SEQRES 27 A 496 ASN GLY ALA SER PHE THR PRO PRO THR VAL PRO VAL LEU SEQRES 28 A 496 LEU GLN ILE LEU SER GLY ALA GLN ASN ALA GLN ASP LEU SEQRES 29 A 496 LEU PRO THR GLY SER VAL TYR SER LEU PRO ALA ASN ALA SEQRES 30 A 496 ASP ILE GLU ILE SER LEU PRO ALA THR ALA ALA ALA PRO SEQRES 31 A 496 GLY PHE PRO HIS PRO PHE HIS LEU HIS GLY HIS THR PHE SEQRES 32 A 496 ALA VAL VAL ARG SER ALA GLY SER SER THR TYR ASN TYR SEQRES 33 A 496 ALA ASN PRO VAL TYR ARG ASP VAL VAL SER THR GLY SER SEQRES 34 A 496 PRO GLY ASP ASN VAL THR ILE ARG PHE ARG THR ASP ASN SEQRES 35 A 496 PRO GLY PRO TRP PHE LEU HIS CYS HIS ILE ASP PHE HIS SEQRES 36 A 496 LEU GLU ALA GLY PHE ALA VAL VAL MET ALA GLU ASP ILE SEQRES 37 A 496 PRO ASP VAL ALA ALA VAL ASN PRO VAL PRO GLN ALA TRP SEQRES 38 A 496 SER ASP LEU CYS PRO THR TYR ASN ALA LEU ASP PRO ASN SEQRES 39 A 496 ASP GLN MODRES 4JHU ASN A 433 ASN GLYCOSYLATION SITE MODRES 4JHU ASN A 54 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 15 HET NAG C 1 14 HET NAG C 2 14 HET CU A 501 1 HET CU A 502 1 HET CU A 503 1 HET CU A 504 1 HET CU A 509 1 HET CU A 510 1 HET CU A 511 1 HET CU A 512 1 HET CU A 513 1 HET CU A 514 1 HET CU A 515 1 HET CU A 516 1 HET CU A 517 1 HET PG4 A 518 10 HET CU A 519 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 CU 14(CU 2+) FORMUL 17 PG4 C8 H18 O5 FORMUL 19 HOH *341(H2 O) HELIX 1 1 ASN A 54 LEU A 58 5 5 HELIX 2 2 THR A 73 ASP A 77 5 5 HELIX 3 3 THR A 114 GLY A 119 5 6 HELIX 4 4 HIS A 133 TYR A 137 5 5 HELIX 5 5 ASP A 141 SER A 143 5 3 HELIX 6 6 PHE A 269 VAL A 273 5 5 HELIX 7 7 VAL A 300 LEU A 304 5 5 HELIX 8 8 PRO A 349 SER A 356 1 8 HELIX 9 9 ASN A 360 LEU A 364 5 5 HELIX 10 10 ILE A 452 ALA A 458 1 7 HELIX 11 11 ASP A 470 ASN A 475 1 6 HELIX 12 12 PRO A 478 ALA A 490 1 13 HELIX 13 13 ASP A 492 GLN A 496 5 5 SHEET 1 A 4 ARG A 22 VAL A 27 0 SHEET 2 A 4 VAL A 5 VAL A 15 -1 N VAL A 15 O ARG A 22 SHEET 3 A 4 ARG A 43 ASP A 50 1 O ASN A 47 N LEU A 8 SHEET 4 A 4 SER A 92 GLN A 98 -1 O PHE A 97 N PHE A 44 SHEET 1 B 4 ILE A 36 ASN A 39 0 SHEET 2 B 4 ARG A 121 TYR A 127 1 O TYR A 127 N GLY A 38 SHEET 3 B 4 GLY A 104 SER A 110 -1 N PHE A 106 O ILE A 124 SHEET 4 B 4 ILE A 63 HIS A 66 -1 N HIS A 64 O HIS A 109 SHEET 1 C 6 ALA A 167 ILE A 170 0 SHEET 2 C 6 VAL A 145 TRP A 151 -1 N ALA A 149 O LEU A 169 SHEET 3 C 6 ARG A 194 SER A 201 1 O ARG A 198 N ILE A 146 SHEET 4 C 6 ARG A 242 ASN A 248 -1 O TYR A 243 N LEU A 199 SHEET 5 C 6 MET A 217 ALA A 222 -1 N THR A 218 O VAL A 246 SHEET 6 C 6 VAL A 225 VAL A 232 -1 O VAL A 232 N MET A 217 SHEET 1 D 5 VAL A 186 VAL A 189 0 SHEET 2 D 5 SER A 275 TYR A 280 1 O ILE A 277 N ILE A 187 SHEET 3 D 5 ASN A 255 PRO A 262 -1 N ILE A 258 O ALA A 276 SHEET 4 D 5 HIS A 208 ILE A 212 -1 N SER A 211 O ARG A 259 SHEET 5 D 5 ILE A 235 ILE A 237 -1 O ILE A 235 N PHE A 210 SHEET 1 E 5 LEU A 323 ASN A 326 0 SHEET 2 E 5 ASP A 378 PRO A 384 1 O GLU A 380 N ILE A 325 SHEET 3 E 5 ASN A 433 ARG A 439 -1 O ILE A 436 N ILE A 381 SHEET 4 E 5 PHE A 403 ARG A 407 -1 N ALA A 404 O ARG A 437 SHEET 5 E 5 TYR A 421 ARG A 422 -1 O ARG A 422 N PHE A 403 SHEET 1 F 2 PHE A 329 ALA A 332 0 SHEET 2 F 2 ARG A 335 ILE A 338 -1 O ARG A 335 N ALA A 332 SHEET 1 G 5 VAL A 370 LEU A 373 0 SHEET 2 G 5 ALA A 461 GLU A 466 1 O VAL A 463 N TYR A 371 SHEET 3 G 5 GLY A 444 CYS A 450 -1 N LEU A 448 O VAL A 462 SHEET 4 G 5 PRO A 395 LEU A 398 -1 N HIS A 397 O HIS A 449 SHEET 5 G 5 VAL A 424 SER A 426 -1 O VAL A 425 N PHE A 396 SSBOND 1 CYS A 85 CYS A 485 1555 1555 2.04 SSBOND 2 CYS A 117 CYS A 204 1555 1555 1.98 LINK ND2 ASN A 54 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 433 C1 NAG C 1 1555 1555 1.42 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK NE2 HIS A 55 CU CU A 509 1555 1555 2.01 LINK NE2 HIS A 64 CU CU A 504 1555 1555 1.94 LINK ND1 HIS A 66 CU CU A 502 1555 1555 1.97 LINK NE2 HIS A 71 CU CU A 512 1555 1555 2.01 LINK ND1 HIS A 91 CU CU A 517 1555 1555 2.04 LINK NE2 HIS A 109 CU CU A 502 1555 1555 1.98 LINK NE2 HIS A 111 CU CU A 501 1555 1555 2.04 LINK OD2 ASP A 183 CU CU A 513 1555 1555 2.00 LINK OD1 ASP A 183 CU CU A 513 1555 1555 2.68 LINK OD1 ASP A 322 CU CU A 516 1555 1555 1.98 LINK OD2 ASP A 378 CU CU A 511 1555 1555 1.98 LINK ND1 HIS A 394 CU CU A 503 1555 1555 2.04 LINK NE2 HIS A 397 CU CU A 504 1555 1555 1.94 LINK NE2 HIS A 399 CU CU A 501 1555 1555 1.99 LINK ND1 HIS A 401 CU CU A 510 1555 1555 2.07 LINK OD1 ASP A 441 CU CU A 510 1555 1555 2.07 LINK OD2 ASP A 441 CU CU A 514 1555 1555 1.94 LINK NE2 HIS A 449 CU CU A 501 1555 1555 1.97 LINK SG CYS A 450 CU CU A 503 1555 1555 2.24 LINK NE2 HIS A 451 CU CU A 502 1555 1555 2.06 LINK ND1 HIS A 455 CU CU A 503 1555 1555 2.03 LINK OE2 GLU A 457 CU CU A 519 1555 1555 1.98 LINK OD2 ASP A 495 CU CU A 515 1555 1555 2.02 LINK CU CU A 501 O HOH A 934 1555 1555 2.38 LINK CU CU A 502 O HOH A 934 1555 1555 2.69 LINK CU CU A 504 O HOH A 603 1555 1555 2.53 LINK CU CU A 509 O HOH A 888 1555 1555 2.19 LINK CU CU A 509 O HOH A 925 1555 1555 2.57 LINK CU CU A 509 O HOH A 926 1555 1555 2.45 LINK CU CU A 510 CU CU A 514 1555 1555 2.72 LINK CU CU A 510 O HOH A 658 1555 1555 2.30 LINK CU CU A 510 O HOH A 887 1555 1555 2.56 LINK CU CU A 510 O HOH A 895 1555 1555 2.32 LINK CU CU A 510 O HOH A 939 1555 1555 2.39 LINK CU CU A 511 O HOH A 883 1555 1555 2.21 LINK CU CU A 511 O HOH A 935 1555 1555 1.84 LINK CU CU A 514 O HOH A 887 1555 1555 2.66 LINK CU CU A 514 O HOH A 911 1555 1555 1.99 LINK CU CU A 514 O HOH A 939 1555 1555 1.76 LINK CU CU A 515 O HOH A 927 1555 1555 2.50 LINK CU CU A 515 O HOH A 928 1555 1555 2.39 LINK CU CU A 515 O HOH A 929 1555 1555 1.92 LINK CU CU A 516 O HOH A 931 1555 1555 2.66 LINK CU CU A 517 O HOH A 765 1555 1555 2.45 CISPEP 1 GLY A 3 PRO A 4 0 8.06 CISPEP 2 PHE A 31 PRO A 32 0 2.90 CISPEP 3 LEU A 365 PRO A 366 0 9.44 CISPEP 4 PHE A 392 PRO A 393 0 5.61 CRYST1 62.900 84.420 116.120 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008612 0.00000 CONECT 414 3800 CONECT 424 3861 CONECT 494 3860 CONECT 515 3858 CONECT 563 3864 CONECT 666 3710 CONECT 705 3869 CONECT 875 3858 CONECT 891 3857 CONECT 939 1603 CONECT 1435 3865 CONECT 1436 3865 CONECT 1603 939 CONECT 2484 3868 CONECT 2887 3863 CONECT 2996 3859 CONECT 3027 3860 CONECT 3045 3857 CONECT 3056 3862 CONECT 3298 3829 CONECT 3367 3862 CONECT 3368 3866 CONECT 3437 3857 CONECT 3443 3859 CONECT 3453 3858 CONECT 3487 3859 CONECT 3507 3880 CONECT 3710 666 CONECT 3788 3867 CONECT 3800 414 3801 3811 CONECT 3801 3800 3802 3808 CONECT 3802 3801 3803 3809 CONECT 3803 3802 3804 3810 CONECT 3804 3803 3805 3811 CONECT 3805 3804 3812 CONECT 3806 3807 3808 3813 CONECT 3807 3806 CONECT 3808 3801 3806 CONECT 3809 3802 CONECT 3810 3803 3814 CONECT 3811 3800 3804 CONECT 3812 3805 CONECT 3813 3806 CONECT 3814 3810 3815 3825 CONECT 3815 3814 3816 3822 CONECT 3816 3815 3817 3823 CONECT 3817 3816 3818 3824 CONECT 3818 3817 3819 3825 CONECT 3819 3818 3826 3827 CONECT 3820 3821 3822 3828 CONECT 3821 3820 CONECT 3822 3815 3820 CONECT 3823 3816 CONECT 3824 3817 CONECT 3825 3814 3818 CONECT 3826 3819 CONECT 3827 3819 CONECT 3828 3820 CONECT 3829 3298 3830 3840 CONECT 3830 3829 3831 3837 CONECT 3831 3830 3832 3838 CONECT 3832 3831 3833 3839 CONECT 3833 3832 3834 3840 CONECT 3834 3833 3841 CONECT 3835 3836 3837 3842 CONECT 3836 3835 CONECT 3837 3830 3835 CONECT 3838 3831 CONECT 3839 3832 3843 CONECT 3840 3829 3833 CONECT 3841 3834 CONECT 3842 3835 CONECT 3843 3839 3844 3854 CONECT 3844 3843 3845 3851 CONECT 3845 3844 3846 3852 CONECT 3846 3845 3847 3853 CONECT 3847 3846 3848 3854 CONECT 3848 3847 3855 CONECT 3849 3850 3851 3856 CONECT 3850 3849 CONECT 3851 3844 3849 CONECT 3852 3845 CONECT 3853 3846 CONECT 3854 3843 3847 CONECT 3855 3848 CONECT 3856 3849 CONECT 3857 891 3045 3437 4214 CONECT 3858 515 875 3453 4214 CONECT 3859 2996 3443 3487 CONECT 3860 494 3027 3883 CONECT 3861 424 4168 4205 4206 CONECT 3862 3056 3367 3866 3938 CONECT 3862 4167 4175 4219 CONECT 3863 2887 4163 4215 CONECT 3864 563 CONECT 3865 1435 1436 CONECT 3866 3368 3862 4167 4191 CONECT 3866 4219 CONECT 3867 3788 4207 4208 4209 CONECT 3868 2484 4211 CONECT 3869 705 4045 CONECT 3870 3871 CONECT 3871 3870 3872 CONECT 3872 3871 3873 CONECT 3873 3872 3874 CONECT 3874 3873 3875 CONECT 3875 3874 3876 CONECT 3876 3875 3877 CONECT 3877 3876 3878 CONECT 3878 3877 3879 CONECT 3879 3878 CONECT 3880 3507 CONECT 3883 3860 CONECT 3938 3862 CONECT 4045 3869 CONECT 4163 3863 CONECT 4167 3862 3866 CONECT 4168 3861 CONECT 4175 3862 CONECT 4191 3866 CONECT 4205 3861 CONECT 4206 3861 CONECT 4207 3867 CONECT 4208 3867 CONECT 4209 3867 CONECT 4211 3868 CONECT 4214 3857 3858 CONECT 4215 3863 CONECT 4219 3862 3866 MASTER 449 0 19 13 31 0 0 6 4191 1 129 39 END