data_4JHY # _entry.id 4JHY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4JHY pdb_00004jhy 10.2210/pdb4jhy/pdb RCSB RCSB078068 ? ? WWPDB D_1000078068 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-386067 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4JHY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-03-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BDI_3606) from Parabacteroides distasonis ATCC 8503 at 1.90 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4JHY _cell.length_a 26.670 _cell.length_b 82.344 _cell.length_c 40.543 _cell.angle_alpha 90.000 _cell.angle_beta 106.830 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JHY _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 18989.957 1 ? ? ? ? 2 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQGHKGEVDECAP(MSE)KNGKVCYSDDVEIENTSKLEIFNAINAWAKKSYGKDVFLSNVNSNKNKGTIFVSSKVELLLN DTDKTIIKYK(MSE)RITCFDNRYTIEASDIVYQYDPLNDKKYKTYKAEDVIANNGDSNTIALIKDPKLFCNATFFFVEN LFADVFDAAQNAESE ; _entity_poly.pdbx_seq_one_letter_code_can ;GQGHKGEVDECAPMKNGKVCYSDDVEIENTSKLEIFNAINAWAKKSYGKDVFLSNVNSNKNKGTIFVSSKVELLLNDTDK TIIKYKMRITCFDNRYTIEASDIVYQYDPLNDKKYKTYKAEDVIANNGDSNTIALIKDPKLFCNATFFFVENLFADVFDA AQNAESE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-386067 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLY n 1 4 HIS n 1 5 LYS n 1 6 GLY n 1 7 GLU n 1 8 VAL n 1 9 ASP n 1 10 GLU n 1 11 CYS n 1 12 ALA n 1 13 PRO n 1 14 MSE n 1 15 LYS n 1 16 ASN n 1 17 GLY n 1 18 LYS n 1 19 VAL n 1 20 CYS n 1 21 TYR n 1 22 SER n 1 23 ASP n 1 24 ASP n 1 25 VAL n 1 26 GLU n 1 27 ILE n 1 28 GLU n 1 29 ASN n 1 30 THR n 1 31 SER n 1 32 LYS n 1 33 LEU n 1 34 GLU n 1 35 ILE n 1 36 PHE n 1 37 ASN n 1 38 ALA n 1 39 ILE n 1 40 ASN n 1 41 ALA n 1 42 TRP n 1 43 ALA n 1 44 LYS n 1 45 LYS n 1 46 SER n 1 47 TYR n 1 48 GLY n 1 49 LYS n 1 50 ASP n 1 51 VAL n 1 52 PHE n 1 53 LEU n 1 54 SER n 1 55 ASN n 1 56 VAL n 1 57 ASN n 1 58 SER n 1 59 ASN n 1 60 LYS n 1 61 ASN n 1 62 LYS n 1 63 GLY n 1 64 THR n 1 65 ILE n 1 66 PHE n 1 67 VAL n 1 68 SER n 1 69 SER n 1 70 LYS n 1 71 VAL n 1 72 GLU n 1 73 LEU n 1 74 LEU n 1 75 LEU n 1 76 ASN n 1 77 ASP n 1 78 THR n 1 79 ASP n 1 80 LYS n 1 81 THR n 1 82 ILE n 1 83 ILE n 1 84 LYS n 1 85 TYR n 1 86 LYS n 1 87 MSE n 1 88 ARG n 1 89 ILE n 1 90 THR n 1 91 CYS n 1 92 PHE n 1 93 ASP n 1 94 ASN n 1 95 ARG n 1 96 TYR n 1 97 THR n 1 98 ILE n 1 99 GLU n 1 100 ALA n 1 101 SER n 1 102 ASP n 1 103 ILE n 1 104 VAL n 1 105 TYR n 1 106 GLN n 1 107 TYR n 1 108 ASP n 1 109 PRO n 1 110 LEU n 1 111 ASN n 1 112 ASP n 1 113 LYS n 1 114 LYS n 1 115 TYR n 1 116 LYS n 1 117 THR n 1 118 TYR n 1 119 LYS n 1 120 ALA n 1 121 GLU n 1 122 ASP n 1 123 VAL n 1 124 ILE n 1 125 ALA n 1 126 ASN n 1 127 ASN n 1 128 GLY n 1 129 ASP n 1 130 SER n 1 131 ASN n 1 132 THR n 1 133 ILE n 1 134 ALA n 1 135 LEU n 1 136 ILE n 1 137 LYS n 1 138 ASP n 1 139 PRO n 1 140 LYS n 1 141 LEU n 1 142 PHE n 1 143 CYS n 1 144 ASN n 1 145 ALA n 1 146 THR n 1 147 PHE n 1 148 PHE n 1 149 PHE n 1 150 VAL n 1 151 GLU n 1 152 ASN n 1 153 LEU n 1 154 PHE n 1 155 ALA n 1 156 ASP n 1 157 VAL n 1 158 PHE n 1 159 ASP n 1 160 ALA n 1 161 ALA n 1 162 GLN n 1 163 ASN n 1 164 ALA n 1 165 GLU n 1 166 SER n 1 167 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BDI_3606, YP_001304926.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8503' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Parabacteroides distasonis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435591 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6LHZ0_PARD8 _struct_ref.pdbx_db_accession A6LHZ0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QGHKGEVDECAPMKNGKVCYSDDVEIENTSKLEIFNAINAWAKKSYGKDVFLSNVNSNKNKGTIFVSSKVELLLNDTDKT IIKYKMRITCFDNRYTIEASDIVYQYDPLNDKKYKTYKAEDVIANNGDSNTIALIKDPKLFCNATFFFVENLFADVFDAA QNAESE ; _struct_ref.pdbx_align_begin 19 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4JHY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6LHZ0 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 184 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 19 _struct_ref_seq.pdbx_auth_seq_align_end 184 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4JHY _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A6LHZ0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4JHY # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details '0.2M ammonium chloride, 20.0% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-02-22 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97939 1.0 2 0.91837 1.0 3 0.97895 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.97939, 0.91837, 0.97895' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 1.90 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 7.160 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4JHY _reflns.B_iso_Wilson_estimate 25.307 _reflns.percent_possible_obs 84.600 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all ? _reflns.d_resolution_low 28.239 _reflns.pdbx_redundancy ? _reflns.number_obs 12093 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.900 1.970 3368 ? 2127 0.358 1.8 ? ? ? ? ? 80.500 1 1 1.970 2.050 3622 ? 2282 0.279 2.6 ? ? ? ? ? 84.600 2 1 2.050 2.140 3189 ? 2030 0.207 3.2 ? ? ? ? ? 83.100 3 1 2.140 2.250 3303 ? 2089 0.160 4.1 ? ? ? ? ? 80.500 4 1 2.250 2.390 3627 ? 2296 0.129 4.9 ? ? ? ? ? 87.700 5 1 2.390 2.580 3656 ? 2331 0.110 5.7 ? ? ? ? ? 87.400 6 1 2.580 2.840 3270 ? 2107 0.078 7.4 ? ? ? ? ? 81.100 7 1 2.840 3.250 3574 ? 2329 0.059 10.2 ? ? ? ? ? 88.300 8 1 3.250 4.080 3344 ? 2187 0.040 14.2 ? ? ? ? ? 84.100 9 1 4.080 ? 3546 ? 2358 0.032 16.5 ? ? ? ? ? 88.300 10 1 # _refine.ls_percent_reflns_R_free 4.9000 _refine.overall_SU_B 6.5220 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4JHY _refine.aniso_B[2][3] -0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.0980 _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] -0.8000 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.aniso_B[3][3] -0.4700 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] -0.5800 _refine.pdbx_overall_ESU_R 0.1720 _refine.ls_R_factor_obs 0.1853 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct MAD _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.ls_number_reflns_R_free 590 _refine.correlation_coeff_Fo_to_Fc_free 0.9290 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 91.0200 _refine.ls_R_factor_R_work 0.1832 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.9000 _refine.pdbx_overall_ESU_R_Free 0.1540 _refine.B_iso_min 14.720 _refine.occupancy_min 0.500 _refine.B_iso_mean 30.1480 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] 1.3800 _refine.B_iso_max 93.920 _refine.ls_d_res_low 28.239 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.aniso_B[1][2] 0.0000 _refine.ls_R_factor_R_free 0.2261 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 12073 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2 .A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 5.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. ; _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1245 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 76 _refine_hist.number_atoms_total 1321 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 28.239 # _refine_ls_shell.d_res_high 1.8980 _refine_ls_shell.d_res_low 1.9470 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.5600 _refine_ls_shell.number_reflns_R_work 791 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2390 _refine_ls_shell.R_factor_R_free 0.2780 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 844 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a TBP-like protein (BDI_3606) from Parabacteroides distasonis ATCC 8503 at 1.90 A resolution' _struct.entry_id 4JHY _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.pdbx_keywords 'Structural Genomics, Unknown Function' _struct_keywords.text ;DUF4468 with TBP-like fold, PF14730 family protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.entry_id 4JHY # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 31 ? GLY A 48 ? SER A 48 GLY A 65 1 ? 18 HELX_P HELX_P2 2 GLU A 121 ? VAL A 123 ? GLU A 138 VAL A 140 5 ? 3 HELX_P HELX_P3 3 ASP A 138 ? GLN A 162 ? ASP A 155 GLN A 179 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 143 SG ? ? A CYS 28 A CYS 160 1_555 ? ? ? ? ? ? ? 2.079 ? ? covale1 covale both ? A PRO 13 C ? ? ? 1_555 A MSE 14 N ? ? A PRO 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 14 C ? ? ? 1_555 A LYS 15 N ? ? A MSE 31 A LYS 32 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? A LYS 86 C ? ? ? 1_555 A MSE 87 N ? ? A LYS 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale4 covale both ? A MSE 87 C ? ? ? 1_555 A ARG 88 N ? ? A MSE 104 A ARG 105 1_555 ? ? ? ? ? ? ? 1.339 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 14 ? LYS A 15 ? MSE A 31 LYS A 32 A 2 LYS A 18 ? VAL A 19 ? LYS A 35 VAL A 36 B 1 TYR A 21 ? GLU A 26 ? TYR A 38 GLU A 43 B 2 ARG A 95 ? TYR A 107 ? ARG A 112 TYR A 124 B 3 LYS A 80 ? PHE A 92 ? LYS A 97 PHE A 109 B 4 THR A 64 ? LEU A 74 ? THR A 81 LEU A 91 B 5 SER A 54 ? ASN A 59 ? SER A 71 ASN A 76 C 1 TYR A 21 ? GLU A 26 ? TYR A 38 GLU A 43 C 2 ARG A 95 ? TYR A 107 ? ARG A 112 TYR A 124 C 3 LYS A 116 ? LYS A 119 ? LYS A 133 LYS A 136 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 15 ? N LYS A 32 O LYS A 18 ? O LYS A 35 B 1 2 N VAL A 25 ? N VAL A 42 O TYR A 96 ? O TYR A 113 B 2 3 O GLN A 106 ? O GLN A 123 N ILE A 82 ? N ILE A 99 B 3 4 O THR A 81 ? O THR A 98 N LEU A 73 ? N LEU A 90 B 4 5 O THR A 64 ? O THR A 81 N ASN A 59 ? N ASN A 76 C 1 2 N VAL A 25 ? N VAL A 42 O TYR A 96 ? O TYR A 113 C 2 3 N TYR A 105 ? N TYR A 122 O TYR A 118 ? O TYR A 135 # _atom_sites.entry_id 4JHY _atom_sites.fract_transf_matrix[1][1] 0.037495 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011343 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012144 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025769 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 19 ? ? ? A . n A 1 3 GLY 3 20 ? ? ? A . n A 1 4 HIS 4 21 ? ? ? A . n A 1 5 LYS 5 22 ? ? ? A . n A 1 6 GLY 6 23 ? ? ? A . n A 1 7 GLU 7 24 ? ? ? A . n A 1 8 VAL 8 25 ? ? ? A . n A 1 9 ASP 9 26 ? ? ? A . n A 1 10 GLU 10 27 27 GLU GLU A . n A 1 11 CYS 11 28 28 CYS CYS A . n A 1 12 ALA 12 29 29 ALA ALA A . n A 1 13 PRO 13 30 30 PRO PRO A . n A 1 14 MSE 14 31 31 MSE MSE A . n A 1 15 LYS 15 32 32 LYS LYS A . n A 1 16 ASN 16 33 33 ASN ASN A . n A 1 17 GLY 17 34 34 GLY GLY A . n A 1 18 LYS 18 35 35 LYS LYS A . n A 1 19 VAL 19 36 36 VAL VAL A . n A 1 20 CYS 20 37 37 CYS CYS A . n A 1 21 TYR 21 38 38 TYR TYR A . n A 1 22 SER 22 39 39 SER SER A . n A 1 23 ASP 23 40 40 ASP ASP A . n A 1 24 ASP 24 41 41 ASP ASP A . n A 1 25 VAL 25 42 42 VAL VAL A . n A 1 26 GLU 26 43 43 GLU GLU A . n A 1 27 ILE 27 44 44 ILE ILE A . n A 1 28 GLU 28 45 45 GLU GLU A . n A 1 29 ASN 29 46 46 ASN ASN A . n A 1 30 THR 30 47 47 THR THR A . n A 1 31 SER 31 48 48 SER SER A . n A 1 32 LYS 32 49 49 LYS LYS A . n A 1 33 LEU 33 50 50 LEU LEU A . n A 1 34 GLU 34 51 51 GLU GLU A . n A 1 35 ILE 35 52 52 ILE ILE A . n A 1 36 PHE 36 53 53 PHE PHE A . n A 1 37 ASN 37 54 54 ASN ASN A . n A 1 38 ALA 38 55 55 ALA ALA A . n A 1 39 ILE 39 56 56 ILE ILE A . n A 1 40 ASN 40 57 57 ASN ASN A . n A 1 41 ALA 41 58 58 ALA ALA A . n A 1 42 TRP 42 59 59 TRP TRP A . n A 1 43 ALA 43 60 60 ALA ALA A . n A 1 44 LYS 44 61 61 LYS LYS A . n A 1 45 LYS 45 62 62 LYS LYS A . n A 1 46 SER 46 63 63 SER SER A . n A 1 47 TYR 47 64 64 TYR TYR A . n A 1 48 GLY 48 65 65 GLY GLY A . n A 1 49 LYS 49 66 66 LYS LYS A . n A 1 50 ASP 50 67 67 ASP ASP A . n A 1 51 VAL 51 68 68 VAL VAL A . n A 1 52 PHE 52 69 69 PHE PHE A . n A 1 53 LEU 53 70 70 LEU LEU A . n A 1 54 SER 54 71 71 SER SER A . n A 1 55 ASN 55 72 72 ASN ASN A . n A 1 56 VAL 56 73 73 VAL VAL A . n A 1 57 ASN 57 74 74 ASN ASN A . n A 1 58 SER 58 75 75 SER SER A . n A 1 59 ASN 59 76 76 ASN ASN A . n A 1 60 LYS 60 77 77 LYS LYS A . n A 1 61 ASN 61 78 78 ASN ASN A . n A 1 62 LYS 62 79 79 LYS LYS A . n A 1 63 GLY 63 80 80 GLY GLY A . n A 1 64 THR 64 81 81 THR THR A . n A 1 65 ILE 65 82 82 ILE ILE A . n A 1 66 PHE 66 83 83 PHE PHE A . n A 1 67 VAL 67 84 84 VAL VAL A . n A 1 68 SER 68 85 85 SER SER A . n A 1 69 SER 69 86 86 SER SER A . n A 1 70 LYS 70 87 87 LYS LYS A . n A 1 71 VAL 71 88 88 VAL VAL A . n A 1 72 GLU 72 89 89 GLU GLU A . n A 1 73 LEU 73 90 90 LEU LEU A . n A 1 74 LEU 74 91 91 LEU LEU A . n A 1 75 LEU 75 92 92 LEU LEU A . n A 1 76 ASN 76 93 93 ASN ASN A . n A 1 77 ASP 77 94 94 ASP ASP A . n A 1 78 THR 78 95 95 THR THR A . n A 1 79 ASP 79 96 96 ASP ASP A . n A 1 80 LYS 80 97 97 LYS LYS A . n A 1 81 THR 81 98 98 THR THR A . n A 1 82 ILE 82 99 99 ILE ILE A . n A 1 83 ILE 83 100 100 ILE ILE A . n A 1 84 LYS 84 101 101 LYS LYS A . n A 1 85 TYR 85 102 102 TYR TYR A . n A 1 86 LYS 86 103 103 LYS LYS A . n A 1 87 MSE 87 104 104 MSE MSE A . n A 1 88 ARG 88 105 105 ARG ARG A . n A 1 89 ILE 89 106 106 ILE ILE A . n A 1 90 THR 90 107 107 THR THR A . n A 1 91 CYS 91 108 108 CYS CYS A . n A 1 92 PHE 92 109 109 PHE PHE A . n A 1 93 ASP 93 110 110 ASP ASP A . n A 1 94 ASN 94 111 111 ASN ASN A . n A 1 95 ARG 95 112 112 ARG ARG A . n A 1 96 TYR 96 113 113 TYR TYR A . n A 1 97 THR 97 114 114 THR THR A . n A 1 98 ILE 98 115 115 ILE ILE A . n A 1 99 GLU 99 116 116 GLU GLU A . n A 1 100 ALA 100 117 117 ALA ALA A . n A 1 101 SER 101 118 118 SER SER A . n A 1 102 ASP 102 119 119 ASP ASP A . n A 1 103 ILE 103 120 120 ILE ILE A . n A 1 104 VAL 104 121 121 VAL VAL A . n A 1 105 TYR 105 122 122 TYR TYR A . n A 1 106 GLN 106 123 123 GLN GLN A . n A 1 107 TYR 107 124 124 TYR TYR A . n A 1 108 ASP 108 125 125 ASP ASP A . n A 1 109 PRO 109 126 126 PRO PRO A . n A 1 110 LEU 110 127 127 LEU LEU A . n A 1 111 ASN 111 128 128 ASN ASN A . n A 1 112 ASP 112 129 129 ASP ASP A . n A 1 113 LYS 113 130 130 LYS LYS A . n A 1 114 LYS 114 131 131 LYS LYS A . n A 1 115 TYR 115 132 132 TYR TYR A . n A 1 116 LYS 116 133 133 LYS LYS A . n A 1 117 THR 117 134 134 THR THR A . n A 1 118 TYR 118 135 135 TYR TYR A . n A 1 119 LYS 119 136 136 LYS LYS A . n A 1 120 ALA 120 137 137 ALA ALA A . n A 1 121 GLU 121 138 138 GLU GLU A . n A 1 122 ASP 122 139 139 ASP ASP A . n A 1 123 VAL 123 140 140 VAL VAL A . n A 1 124 ILE 124 141 141 ILE ILE A . n A 1 125 ALA 125 142 142 ALA ALA A . n A 1 126 ASN 126 143 143 ASN ASN A . n A 1 127 ASN 127 144 144 ASN ASN A . n A 1 128 GLY 128 145 145 GLY GLY A . n A 1 129 ASP 129 146 146 ASP ASP A . n A 1 130 SER 130 147 147 SER SER A . n A 1 131 ASN 131 148 148 ASN ASN A . n A 1 132 THR 132 149 149 THR THR A . n A 1 133 ILE 133 150 150 ILE ILE A . n A 1 134 ALA 134 151 151 ALA ALA A . n A 1 135 LEU 135 152 152 LEU LEU A . n A 1 136 ILE 136 153 153 ILE ILE A . n A 1 137 LYS 137 154 154 LYS LYS A . n A 1 138 ASP 138 155 155 ASP ASP A . n A 1 139 PRO 139 156 156 PRO PRO A . n A 1 140 LYS 140 157 157 LYS LYS A . n A 1 141 LEU 141 158 158 LEU LEU A . n A 1 142 PHE 142 159 159 PHE PHE A . n A 1 143 CYS 143 160 160 CYS CYS A . n A 1 144 ASN 144 161 161 ASN ASN A . n A 1 145 ALA 145 162 162 ALA ALA A . n A 1 146 THR 146 163 163 THR THR A . n A 1 147 PHE 147 164 164 PHE PHE A . n A 1 148 PHE 148 165 165 PHE PHE A . n A 1 149 PHE 149 166 166 PHE PHE A . n A 1 150 VAL 150 167 167 VAL VAL A . n A 1 151 GLU 151 168 168 GLU GLU A . n A 1 152 ASN 152 169 169 ASN ASN A . n A 1 153 LEU 153 170 170 LEU LEU A . n A 1 154 PHE 154 171 171 PHE PHE A . n A 1 155 ALA 155 172 172 ALA ALA A . n A 1 156 ASP 156 173 173 ASP ASP A . n A 1 157 VAL 157 174 174 VAL VAL A . n A 1 158 PHE 158 175 175 PHE PHE A . n A 1 159 ASP 159 176 176 ASP ASP A . n A 1 160 ALA 160 177 177 ALA ALA A . n A 1 161 ALA 161 178 178 ALA ALA A . n A 1 162 GLN 162 179 179 GLN GLN A . n A 1 163 ASN 163 180 180 ASN ASN A . n A 1 164 ALA 164 181 181 ALA ALA A . n A 1 165 GLU 165 182 182 GLU GLU A . n A 1 166 SER 166 183 ? ? ? A . n A 1 167 GLU 167 184 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 1 HOH HOH A . B 2 HOH 2 202 2 HOH HOH A . B 2 HOH 3 203 3 HOH HOH A . B 2 HOH 4 204 4 HOH HOH A . B 2 HOH 5 205 5 HOH HOH A . B 2 HOH 6 206 6 HOH HOH A . B 2 HOH 7 207 7 HOH HOH A . B 2 HOH 8 208 8 HOH HOH A . B 2 HOH 9 209 9 HOH HOH A . B 2 HOH 10 210 10 HOH HOH A . B 2 HOH 11 211 11 HOH HOH A . B 2 HOH 12 212 12 HOH HOH A . B 2 HOH 13 213 13 HOH HOH A . B 2 HOH 14 214 14 HOH HOH A . B 2 HOH 15 215 15 HOH HOH A . B 2 HOH 16 216 16 HOH HOH A . B 2 HOH 17 217 17 HOH HOH A . B 2 HOH 18 218 18 HOH HOH A . B 2 HOH 19 219 19 HOH HOH A . B 2 HOH 20 220 20 HOH HOH A . B 2 HOH 21 221 21 HOH HOH A . B 2 HOH 22 222 22 HOH HOH A . B 2 HOH 23 223 23 HOH HOH A . B 2 HOH 24 224 24 HOH HOH A . B 2 HOH 25 225 25 HOH HOH A . B 2 HOH 26 226 26 HOH HOH A . B 2 HOH 27 227 27 HOH HOH A . B 2 HOH 28 228 28 HOH HOH A . B 2 HOH 29 229 29 HOH HOH A . B 2 HOH 30 230 30 HOH HOH A . B 2 HOH 31 231 31 HOH HOH A . B 2 HOH 32 232 32 HOH HOH A . B 2 HOH 33 233 33 HOH HOH A . B 2 HOH 34 234 34 HOH HOH A . B 2 HOH 35 235 35 HOH HOH A . B 2 HOH 36 236 36 HOH HOH A . B 2 HOH 37 237 37 HOH HOH A . B 2 HOH 38 238 38 HOH HOH A . B 2 HOH 39 239 39 HOH HOH A . B 2 HOH 40 240 40 HOH HOH A . B 2 HOH 41 241 41 HOH HOH A . B 2 HOH 42 242 42 HOH HOH A . B 2 HOH 43 243 43 HOH HOH A . B 2 HOH 44 244 44 HOH HOH A . B 2 HOH 45 245 45 HOH HOH A . B 2 HOH 46 246 46 HOH HOH A . B 2 HOH 47 247 47 HOH HOH A . B 2 HOH 48 248 48 HOH HOH A . B 2 HOH 49 249 49 HOH HOH A . B 2 HOH 50 250 50 HOH HOH A . B 2 HOH 51 251 51 HOH HOH A . B 2 HOH 52 252 52 HOH HOH A . B 2 HOH 53 253 53 HOH HOH A . B 2 HOH 54 254 54 HOH HOH A . B 2 HOH 55 255 55 HOH HOH A . B 2 HOH 56 256 56 HOH HOH A . B 2 HOH 57 257 57 HOH HOH A . B 2 HOH 58 258 58 HOH HOH A . B 2 HOH 59 259 59 HOH HOH A . B 2 HOH 60 260 60 HOH HOH A . B 2 HOH 61 261 61 HOH HOH A . B 2 HOH 62 262 62 HOH HOH A . B 2 HOH 63 263 63 HOH HOH A . B 2 HOH 64 264 64 HOH HOH A . B 2 HOH 65 265 65 HOH HOH A . B 2 HOH 66 266 66 HOH HOH A . B 2 HOH 67 267 67 HOH HOH A . B 2 HOH 68 268 68 HOH HOH A . B 2 HOH 69 269 69 HOH HOH A . B 2 HOH 70 270 70 HOH HOH A . B 2 HOH 71 271 71 HOH HOH A . B 2 HOH 72 272 72 HOH HOH A . B 2 HOH 73 273 73 HOH HOH A . B 2 HOH 74 274 74 HOH HOH A . B 2 HOH 75 275 75 HOH HOH A . B 2 HOH 76 276 76 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 14 A MSE 31 ? MET SELENOMETHIONINE 2 A MSE 87 A MSE 104 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-03 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.6767 _pdbx_refine_tls.origin_y 18.4004 _pdbx_refine_tls.origin_z 24.8252 _pdbx_refine_tls.T[1][1] 0.0762 _pdbx_refine_tls.T[2][2] 0.0806 _pdbx_refine_tls.T[3][3] 0.1050 _pdbx_refine_tls.T[1][2] 0.0071 _pdbx_refine_tls.T[1][3] 0.0258 _pdbx_refine_tls.T[2][3] 0.0074 _pdbx_refine_tls.L[1][1] 1.5341 _pdbx_refine_tls.L[2][2] 1.2645 _pdbx_refine_tls.L[3][3] 2.0034 _pdbx_refine_tls.L[1][2] 0.4898 _pdbx_refine_tls.L[1][3] 0.5979 _pdbx_refine_tls.L[2][3] 0.7073 _pdbx_refine_tls.S[1][1] -0.0010 _pdbx_refine_tls.S[2][2] 0.0137 _pdbx_refine_tls.S[3][3] -0.0127 _pdbx_refine_tls.S[1][2] 0.0312 _pdbx_refine_tls.S[1][3] -0.0994 _pdbx_refine_tls.S[2][3] -0.0435 _pdbx_refine_tls.S[2][1] 0.0014 _pdbx_refine_tls.S[3][1] 0.0647 _pdbx_refine_tls.S[3][2] -0.0294 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 27 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 182 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 CCP4 5.7.0032 ? ? ? ? 'model building' ? ? ? 7 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 8 XDS . ? ? ? ? 'data reduction' ? ? ? 9 SHELXD . ? ? ? ? phasing ? ? ? 10 autoSHARP . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 19-184) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4JHY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 93 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -133.51 _pdbx_validate_torsion.psi -129.46 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 154 ? CD ? A LYS 137 CD 2 1 Y 1 A LYS 154 ? CE ? A LYS 137 CE 3 1 Y 1 A LYS 154 ? NZ ? A LYS 137 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 19 ? A GLN 2 3 1 Y 1 A GLY 20 ? A GLY 3 4 1 Y 1 A HIS 21 ? A HIS 4 5 1 Y 1 A LYS 22 ? A LYS 5 6 1 Y 1 A GLY 23 ? A GLY 6 7 1 Y 1 A GLU 24 ? A GLU 7 8 1 Y 1 A VAL 25 ? A VAL 8 9 1 Y 1 A ASP 26 ? A ASP 9 10 1 Y 1 A SER 183 ? A SER 166 11 1 Y 1 A GLU 184 ? A GLU 167 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #