data_4JIF # _entry.id 4JIF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4JIF RCSB RCSB078085 WWPDB D_1000078085 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4JIF _pdbx_database_status.recvd_initial_deposition_date 2013-03-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, W.' 1 'Boggon, T.J.' 2 # _citation.id primary _citation.title 'Cocrystal structure of the ICAP1 PTB domain in complex with a KRIT1 peptide.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 69 _citation.page_first 494 _citation.page_last 498 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23695561 _citation.pdbx_database_id_DOI 10.1107/S1744309113010762 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Liu, W.' 1 primary 'Boggon, T.J.' 2 # _cell.entry_id 4JIF _cell.length_a 81.017 _cell.length_b 81.017 _cell.length_c 89.583 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4JIF _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Integrin beta-1-binding protein 1' 16909.037 1 ? ? ? ? 2 polymer man 'Krev interaction trapped protein 1' 3726.242 1 ? ? ? ? 3 water nat water 18.015 111 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Integrin cytoplasmic domain-associated protein 1, ICAP-1' 2 'Krev interaction trapped 1, Cerebral cavernous malformations 1 protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQ YDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP ; ;GSSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQ YDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP ; A ? 2 'polypeptide(L)' no no GPLGSQSHFIPALFRPSPLERIKTNVINPAYATE GPLGSQSHFIPALFRPSPLERIKTNVINPAYATE B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 SER n 1 5 GLY n 1 6 GLN n 1 7 SER n 1 8 ASN n 1 9 ASN n 1 10 ASN n 1 11 SER n 1 12 ASP n 1 13 THR n 1 14 CYS n 1 15 ALA n 1 16 GLU n 1 17 PHE n 1 18 ARG n 1 19 ILE n 1 20 LYS n 1 21 TYR n 1 22 VAL n 1 23 GLY n 1 24 ALA n 1 25 ILE n 1 26 GLU n 1 27 LYS n 1 28 LEU n 1 29 LYS n 1 30 LEU n 1 31 SER n 1 32 GLU n 1 33 GLY n 1 34 LYS n 1 35 GLY n 1 36 LEU n 1 37 GLU n 1 38 GLY n 1 39 PRO n 1 40 LEU n 1 41 ASP n 1 42 LEU n 1 43 ILE n 1 44 ASN n 1 45 TYR n 1 46 ILE n 1 47 ASP n 1 48 VAL n 1 49 ALA n 1 50 GLN n 1 51 GLN n 1 52 ASP n 1 53 GLY n 1 54 LYS n 1 55 LEU n 1 56 PRO n 1 57 PHE n 1 58 VAL n 1 59 PRO n 1 60 PRO n 1 61 GLU n 1 62 GLU n 1 63 GLU n 1 64 PHE n 1 65 ILE n 1 66 MET n 1 67 GLY n 1 68 VAL n 1 69 SER n 1 70 LYS n 1 71 TYR n 1 72 GLY n 1 73 ILE n 1 74 LYS n 1 75 VAL n 1 76 SER n 1 77 THR n 1 78 SER n 1 79 ASP n 1 80 GLN n 1 81 TYR n 1 82 ASP n 1 83 VAL n 1 84 LEU n 1 85 HIS n 1 86 ARG n 1 87 HIS n 1 88 ALA n 1 89 LEU n 1 90 TYR n 1 91 LEU n 1 92 ILE n 1 93 ILE n 1 94 ARG n 1 95 MET n 1 96 VAL n 1 97 CYS n 1 98 TYR n 1 99 ASP n 1 100 ASP n 1 101 GLY n 1 102 LEU n 1 103 GLY n 1 104 ALA n 1 105 GLY n 1 106 LYS n 1 107 SER n 1 108 LEU n 1 109 LEU n 1 110 ALA n 1 111 LEU n 1 112 LYS n 1 113 THR n 1 114 THR n 1 115 ASP n 1 116 ALA n 1 117 SER n 1 118 ASN n 1 119 GLU n 1 120 GLU n 1 121 TYR n 1 122 SER n 1 123 LEU n 1 124 TRP n 1 125 VAL n 1 126 TYR n 1 127 GLN n 1 128 CYS n 1 129 ASN n 1 130 SER n 1 131 LEU n 1 132 GLU n 1 133 GLN n 1 134 ALA n 1 135 GLN n 1 136 ALA n 1 137 ILE n 1 138 CYS n 1 139 LYS n 1 140 VAL n 1 141 LEU n 1 142 SER n 1 143 THR n 1 144 ALA n 1 145 PHE n 1 146 ASP n 1 147 SER n 1 148 VAL n 1 149 LEU n 1 150 THR n 1 151 SER n 1 152 GLU n 1 153 LYS n 1 154 PRO n 2 1 GLY n 2 2 PRO n 2 3 LEU n 2 4 GLY n 2 5 SER n 2 6 GLN n 2 7 SER n 2 8 HIS n 2 9 PHE n 2 10 ILE n 2 11 PRO n 2 12 ALA n 2 13 LEU n 2 14 PHE n 2 15 ARG n 2 16 PRO n 2 17 SER n 2 18 PRO n 2 19 LEU n 2 20 GLU n 2 21 ARG n 2 22 ILE n 2 23 LYS n 2 24 THR n 2 25 ASN n 2 26 VAL n 2 27 ILE n 2 28 ASN n 2 29 PRO n 2 30 ALA n 2 31 TYR n 2 32 ALA n 2 33 THR n 2 34 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'ITGB1BP1, ICAP1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PET32-a ? ? 2 1 sample ? ? ? human ? 'KRIT1, CCM1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? pGEX6p-1 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ITBP1_HUMAN O14713 1 ;SSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYD VLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP ; 49 ? 2 UNP KRIT1_HUMAN O00522 2 QSHFIPALFRPSPLERIKTNVINPAYATE 170 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4JIF A 3 ? 154 ? O14713 49 ? 200 ? 49 200 2 2 4JIF B 6 ? 34 ? O00522 170 ? 198 ? 170 198 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4JIF GLY A 1 ? UNP O14713 ? ? 'EXPRESSION TAG' 47 1 1 4JIF SER A 2 ? UNP O14713 ? ? 'EXPRESSION TAG' 48 2 2 4JIF GLY B 1 ? UNP O00522 ? ? 'EXPRESSION TAG' 165 3 2 4JIF PRO B 2 ? UNP O00522 ? ? 'EXPRESSION TAG' 166 4 2 4JIF LEU B 3 ? UNP O00522 ? ? 'EXPRESSION TAG' 167 5 2 4JIF GLY B 4 ? UNP O00522 ? ? 'EXPRESSION TAG' 168 6 2 4JIF SER B 5 ? UNP O00522 ? ? 'EXPRESSION TAG' 169 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4JIF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '18-20%PEG3350, 0.2M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si111 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075 # _reflns.entry_id 4JIF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35 _reflns.d_resolution_high 1.7 _reflns.number_obs 19541 _reflns.number_all 19620 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 28.3 _reflns.pdbx_redundancy 12.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 12.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1927 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4JIF _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 19666 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.666 _refine.ls_d_res_high 1.701 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.1971 _refine.ls_R_factor_all 0.1971 _refine.ls_R_factor_R_work 0.1956 _refine.ls_R_factor_R_free 0.2263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.11 _refine.ls_number_reflns_R_free 1001 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -6.8918 _refine.aniso_B[2][2] -6.8918 _refine.aniso_B[3][3] 13.7836 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.339 _refine.solvent_model_param_bsol 40.872 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.98 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 4DX8 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 25.76 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1175 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1286 _refine_hist.d_res_high 1.701 _refine_hist.d_res_low 32.666 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 1246 ? 'X-RAY DIFFRACTION' f_angle_d 1.070 ? ? 1698 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 14.858 ? ? 479 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.077 ? ? 196 ? 'X-RAY DIFFRACTION' f_plane_restr 0.005 ? ? 215 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.7005 1.7902 2610 0.3838 100.00 0.3581 . . 126 . . . . 'X-RAY DIFFRACTION' . 1.7902 1.9023 2608 0.2973 100.00 0.3599 . . 130 . . . . 'X-RAY DIFFRACTION' . 1.9023 2.0492 2573 0.2355 100.00 0.2556 . . 178 . . . . 'X-RAY DIFFRACTION' . 2.0492 2.2554 2596 0.2086 99.00 0.2359 . . 152 . . . . 'X-RAY DIFFRACTION' . 2.2554 2.5816 2645 0.1902 100.00 0.2456 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.5816 3.2521 2682 0.1885 100.00 0.2156 . . 155 . . . . 'X-RAY DIFFRACTION' . 3.2521 32.6719 2859 0.1696 99.00 0.1925 . . 125 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4JIF _struct.title 'Co-crystal structure of ICAP1 PTB domain in complex with a KRIT1 peptide' _struct.pdbx_descriptor 'Integrin beta-1-binding protein 1, Krev interaction trapped protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4JIF _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'PTB fold, Integrin signaling, Integrin binding, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 38 ? ASP A 52 ? GLY A 84 ASP A 98 1 ? 15 HELX_P HELX_P2 2 SER A 130 ? SER A 147 ? SER A 176 SER A 193 1 ? 18 HELX_P HELX_P3 3 SER B 17 ? ARG B 21 ? SER B 181 ARG B 185 1 ? 5 HELX_P HELX_P4 4 PRO B 29 ? ALA B 32 ? PRO B 193 ALA B 196 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 83 ? ALA A 88 ? VAL A 129 ALA A 134 A 2 GLY A 72 ? THR A 77 ? GLY A 118 THR A 123 A 3 GLU A 63 ? SER A 69 ? GLU A 109 SER A 115 A 4 ALA A 15 ? LEU A 28 ? ALA A 61 LEU A 74 A 5 TYR A 121 ? CYS A 128 ? TYR A 167 CYS A 174 A 6 SER A 107 ? THR A 114 ? SER A 153 THR A 160 A 7 ILE A 92 ? ASP A 99 ? ILE A 138 ASP A 145 A 8 ILE B 22 ? ILE B 27 ? ILE B 186 ILE B 191 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 84 ? O LEU A 130 N VAL A 75 ? N VAL A 121 A 2 3 O LYS A 74 ? O LYS A 120 N GLY A 67 ? N GLY A 113 A 3 4 O MET A 66 ? O MET A 112 N PHE A 17 ? N PHE A 63 A 4 5 N LEU A 28 ? N LEU A 74 O TYR A 121 ? O TYR A 167 A 5 6 O TRP A 124 ? O TRP A 170 N LEU A 111 ? N LEU A 157 A 6 7 O LEU A 108 ? O LEU A 154 N TYR A 98 ? N TYR A 144 A 7 8 N CYS A 97 ? N CYS A 143 O LYS B 23 ? O LYS B 187 # _database_PDB_matrix.entry_id 4JIF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4JIF _atom_sites.fract_transf_matrix[1][1] 0.012343 _atom_sites.fract_transf_matrix[1][2] 0.007126 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011163 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 ? ? ? A . n A 1 2 SER 2 48 ? ? ? A . n A 1 3 SER 3 49 ? ? ? A . n A 1 4 SER 4 50 ? ? ? A . n A 1 5 GLY 5 51 ? ? ? A . n A 1 6 GLN 6 52 ? ? ? A . n A 1 7 SER 7 53 ? ? ? A . n A 1 8 ASN 8 54 ? ? ? A . n A 1 9 ASN 9 55 ? ? ? A . n A 1 10 ASN 10 56 ? ? ? A . n A 1 11 SER 11 57 ? ? ? A . n A 1 12 ASP 12 58 ? ? ? A . n A 1 13 THR 13 59 ? ? ? A . n A 1 14 CYS 14 60 60 CYS CYS A . n A 1 15 ALA 15 61 61 ALA ALA A . n A 1 16 GLU 16 62 62 GLU GLU A . n A 1 17 PHE 17 63 63 PHE PHE A . n A 1 18 ARG 18 64 64 ARG ARG A . n A 1 19 ILE 19 65 65 ILE ILE A . n A 1 20 LYS 20 66 66 LYS LYS A . n A 1 21 TYR 21 67 67 TYR TYR A . n A 1 22 VAL 22 68 68 VAL VAL A . n A 1 23 GLY 23 69 69 GLY GLY A . n A 1 24 ALA 24 70 70 ALA ALA A . n A 1 25 ILE 25 71 71 ILE ILE A . n A 1 26 GLU 26 72 72 GLU GLU A . n A 1 27 LYS 27 73 73 LYS LYS A . n A 1 28 LEU 28 74 74 LEU LEU A . n A 1 29 LYS 29 75 75 LYS LYS A . n A 1 30 LEU 30 76 76 LEU LEU A . n A 1 31 SER 31 77 ? ? ? A . n A 1 32 GLU 32 78 ? ? ? A . n A 1 33 GLY 33 79 ? ? ? A . n A 1 34 LYS 34 80 ? ? ? A . n A 1 35 GLY 35 81 ? ? ? A . n A 1 36 LEU 36 82 82 LEU LEU A . n A 1 37 GLU 37 83 83 GLU GLU A . n A 1 38 GLY 38 84 84 GLY GLY A . n A 1 39 PRO 39 85 85 PRO PRO A . n A 1 40 LEU 40 86 86 LEU LEU A . n A 1 41 ASP 41 87 87 ASP ASP A . n A 1 42 LEU 42 88 88 LEU LEU A . n A 1 43 ILE 43 89 89 ILE ILE A . n A 1 44 ASN 44 90 90 ASN ASN A . n A 1 45 TYR 45 91 91 TYR TYR A . n A 1 46 ILE 46 92 92 ILE ILE A . n A 1 47 ASP 47 93 93 ASP ASP A . n A 1 48 VAL 48 94 94 VAL VAL A . n A 1 49 ALA 49 95 95 ALA ALA A . n A 1 50 GLN 50 96 96 GLN GLN A . n A 1 51 GLN 51 97 97 GLN GLN A . n A 1 52 ASP 52 98 98 ASP ASP A . n A 1 53 GLY 53 99 99 GLY GLY A . n A 1 54 LYS 54 100 100 LYS LYS A . n A 1 55 LEU 55 101 101 LEU LEU A . n A 1 56 PRO 56 102 102 PRO PRO A . n A 1 57 PHE 57 103 103 PHE PHE A . n A 1 58 VAL 58 104 104 VAL VAL A . n A 1 59 PRO 59 105 105 PRO PRO A . n A 1 60 PRO 60 106 106 PRO PRO A . n A 1 61 GLU 61 107 107 GLU GLU A . n A 1 62 GLU 62 108 108 GLU GLU A . n A 1 63 GLU 63 109 109 GLU GLU A . n A 1 64 PHE 64 110 110 PHE PHE A . n A 1 65 ILE 65 111 111 ILE ILE A . n A 1 66 MET 66 112 112 MET MET A . n A 1 67 GLY 67 113 113 GLY GLY A . n A 1 68 VAL 68 114 114 VAL VAL A . n A 1 69 SER 69 115 115 SER SER A . n A 1 70 LYS 70 116 116 LYS LYS A . n A 1 71 TYR 71 117 117 TYR TYR A . n A 1 72 GLY 72 118 118 GLY GLY A . n A 1 73 ILE 73 119 119 ILE ILE A . n A 1 74 LYS 74 120 120 LYS LYS A . n A 1 75 VAL 75 121 121 VAL VAL A . n A 1 76 SER 76 122 122 SER SER A . n A 1 77 THR 77 123 123 THR THR A . n A 1 78 SER 78 124 124 SER SER A . n A 1 79 ASP 79 125 125 ASP ASP A . n A 1 80 GLN 80 126 126 GLN GLN A . n A 1 81 TYR 81 127 127 TYR TYR A . n A 1 82 ASP 82 128 128 ASP ASP A . n A 1 83 VAL 83 129 129 VAL VAL A . n A 1 84 LEU 84 130 130 LEU LEU A . n A 1 85 HIS 85 131 131 HIS HIS A . n A 1 86 ARG 86 132 132 ARG ARG A . n A 1 87 HIS 87 133 133 HIS HIS A . n A 1 88 ALA 88 134 134 ALA ALA A . n A 1 89 LEU 89 135 135 LEU LEU A . n A 1 90 TYR 90 136 136 TYR TYR A . n A 1 91 LEU 91 137 137 LEU LEU A . n A 1 92 ILE 92 138 138 ILE ILE A . n A 1 93 ILE 93 139 139 ILE ILE A . n A 1 94 ARG 94 140 140 ARG ARG A . n A 1 95 MET 95 141 141 MET MET A . n A 1 96 VAL 96 142 142 VAL VAL A . n A 1 97 CYS 97 143 143 CYS CYS A . n A 1 98 TYR 98 144 144 TYR TYR A . n A 1 99 ASP 99 145 145 ASP ASP A . n A 1 100 ASP 100 146 146 ASP ASP A . n A 1 101 GLY 101 147 147 GLY GLY A . n A 1 102 LEU 102 148 148 LEU LEU A . n A 1 103 GLY 103 149 149 GLY GLY A . n A 1 104 ALA 104 150 150 ALA ALA A . n A 1 105 GLY 105 151 151 GLY GLY A . n A 1 106 LYS 106 152 152 LYS LYS A . n A 1 107 SER 107 153 153 SER SER A . n A 1 108 LEU 108 154 154 LEU LEU A . n A 1 109 LEU 109 155 155 LEU LEU A . n A 1 110 ALA 110 156 156 ALA ALA A . n A 1 111 LEU 111 157 157 LEU LEU A . n A 1 112 LYS 112 158 158 LYS LYS A . n A 1 113 THR 113 159 159 THR THR A . n A 1 114 THR 114 160 160 THR THR A . n A 1 115 ASP 115 161 161 ASP ASP A . n A 1 116 ALA 116 162 162 ALA ALA A . n A 1 117 SER 117 163 163 SER SER A . n A 1 118 ASN 118 164 164 ASN ASN A . n A 1 119 GLU 119 165 165 GLU GLU A . n A 1 120 GLU 120 166 166 GLU GLU A . n A 1 121 TYR 121 167 167 TYR TYR A . n A 1 122 SER 122 168 168 SER SER A . n A 1 123 LEU 123 169 169 LEU LEU A . n A 1 124 TRP 124 170 170 TRP TRP A . n A 1 125 VAL 125 171 171 VAL VAL A . n A 1 126 TYR 126 172 172 TYR TYR A . n A 1 127 GLN 127 173 173 GLN GLN A . n A 1 128 CYS 128 174 174 CYS CYS A . n A 1 129 ASN 129 175 175 ASN ASN A . n A 1 130 SER 130 176 176 SER SER A . n A 1 131 LEU 131 177 177 LEU LEU A . n A 1 132 GLU 132 178 178 GLU GLU A . n A 1 133 GLN 133 179 179 GLN GLN A . n A 1 134 ALA 134 180 180 ALA ALA A . n A 1 135 GLN 135 181 181 GLN GLN A . n A 1 136 ALA 136 182 182 ALA ALA A . n A 1 137 ILE 137 183 183 ILE ILE A . n A 1 138 CYS 138 184 184 CYS CYS A . n A 1 139 LYS 139 185 185 LYS LYS A . n A 1 140 VAL 140 186 186 VAL VAL A . n A 1 141 LEU 141 187 187 LEU LEU A . n A 1 142 SER 142 188 188 SER SER A . n A 1 143 THR 143 189 189 THR THR A . n A 1 144 ALA 144 190 190 ALA ALA A . n A 1 145 PHE 145 191 191 PHE PHE A . n A 1 146 ASP 146 192 192 ASP ASP A . n A 1 147 SER 147 193 193 SER SER A . n A 1 148 VAL 148 194 194 VAL VAL A . n A 1 149 LEU 149 195 ? ? ? A . n A 1 150 THR 150 196 ? ? ? A . n A 1 151 SER 151 197 ? ? ? A . n A 1 152 GLU 152 198 ? ? ? A . n A 1 153 LYS 153 199 ? ? ? A . n A 1 154 PRO 154 200 ? ? ? A . n B 2 1 GLY 1 165 ? ? ? B . n B 2 2 PRO 2 166 ? ? ? B . n B 2 3 LEU 3 167 ? ? ? B . n B 2 4 GLY 4 168 ? ? ? B . n B 2 5 SER 5 169 ? ? ? B . n B 2 6 GLN 6 170 ? ? ? B . n B 2 7 SER 7 171 ? ? ? B . n B 2 8 HIS 8 172 ? ? ? B . n B 2 9 PHE 9 173 ? ? ? B . n B 2 10 ILE 10 174 ? ? ? B . n B 2 11 PRO 11 175 ? ? ? B . n B 2 12 ALA 12 176 ? ? ? B . n B 2 13 LEU 13 177 ? ? ? B . n B 2 14 PHE 14 178 178 PHE PHE B . n B 2 15 ARG 15 179 179 ARG ARG B . n B 2 16 PRO 16 180 180 PRO PRO B . n B 2 17 SER 17 181 181 SER SER B . n B 2 18 PRO 18 182 182 PRO PRO B . n B 2 19 LEU 19 183 183 LEU LEU B . n B 2 20 GLU 20 184 184 GLU GLU B . n B 2 21 ARG 21 185 185 ARG ARG B . n B 2 22 ILE 22 186 186 ILE ILE B . n B 2 23 LYS 23 187 187 LYS LYS B . n B 2 24 THR 24 188 188 THR THR B . n B 2 25 ASN 25 189 189 ASN ASN B . n B 2 26 VAL 26 190 190 VAL VAL B . n B 2 27 ILE 27 191 191 ILE ILE B . n B 2 28 ASN 28 192 192 ASN ASN B . n B 2 29 PRO 29 193 193 PRO PRO B . n B 2 30 ALA 30 194 194 ALA ALA B . n B 2 31 TYR 31 195 195 TYR TYR B . n B 2 32 ALA 32 196 196 ALA ALA B . n B 2 33 THR 33 197 ? ? ? B . n B 2 34 GLU 34 198 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1910 ? 1 MORE -8 ? 1 'SSA (A^2)' 7980 ? 2 'ABSA (A^2)' 5860 ? 2 MORE -24 ? 2 'SSA (A^2)' 13920 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 40.5085000000 -0.8660254038 -0.5000000000 0.0000000000 70.1627801384 0.0000000000 0.0000000000 -1.0000000000 14.9305000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-01 2 'Structure model' 1 1 2013-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 14.6712 23.9908 4.1154 0.3060 0.2544 0.2744 0.0428 -0.1065 -0.0767 1.9068 3.8889 3.6026 -0.4096 0.9938 0.9239 -0.1284 -0.3190 0.4969 0.2166 0.2957 -0.5234 -0.2180 -0.0586 -0.0814 'X-RAY DIFFRACTION' 2 ? refined 8.4042 20.2110 3.1223 0.2463 0.1833 0.2817 0.0210 -0.0796 -0.0380 3.0956 1.1036 2.5188 -0.1319 -0.7193 0.4223 0.0011 -0.0139 0.0750 -0.0927 0.0666 0.1524 0.0317 -0.1651 -0.0992 'X-RAY DIFFRACTION' 3 ? refined 24.9018 26.0556 -5.2901 0.4728 0.5274 0.4624 -0.1733 0.0921 -0.1152 2.1166 8.3672 6.6116 -1.6874 5.5504 1.5188 0.1800 1.1057 0.9043 -1.3576 -0.0301 -1.2885 -1.2693 2.2799 0.5028 'X-RAY DIFFRACTION' 4 ? refined 18.2855 20.6058 6.7799 0.2018 0.1802 0.1894 -0.0009 -0.0320 0.0304 3.2055 5.9170 2.0382 1.2942 0.9640 1.6032 0.2048 -0.2161 -0.2681 0.0708 -0.1370 -0.4018 0.1398 0.0623 -0.0642 'X-RAY DIFFRACTION' 5 ? refined 3.3470 9.4630 10.4726 0.2797 0.3320 0.5394 -0.0171 0.0440 0.0117 4.4982 4.9661 7.1128 -0.0165 0.7544 -0.6910 -0.2010 -0.1980 -0.6715 0.4728 -0.0064 1.1977 -0.0418 -0.7627 0.3036 'X-RAY DIFFRACTION' 6 ? refined 19.7908 18.6316 15.3336 0.3329 0.2734 0.2821 -0.0574 -0.1701 0.0450 0.8635 5.1972 0.4125 0.8579 -0.3947 -0.7072 0.1677 -0.3427 -0.1117 0.8389 -0.4369 -0.6131 -0.1588 0.0719 0.1641 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 60:84) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 85:115) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 116:128) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resseq 129:194) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resseq 178:185) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resseq 186:196) ; # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 364 ? ? O A HOH 375 ? ? 1.87 2 1 O A HOH 383 ? ? O A HOH 395 ? ? 1.90 3 1 O A HOH 384 ? ? O A HOH 390 ? ? 2.08 4 1 O A HOH 324 ? ? O A HOH 400 ? ? 2.10 5 1 N A CYS 60 ? ? O A HOH 382 ? ? 2.10 6 1 O A HOH 394 ? ? O A HOH 397 ? ? 2.11 7 1 NZ A LYS 116 ? ? O A HOH 350 ? ? 2.12 8 1 O A HOH 342 ? ? O A HOH 349 ? ? 2.12 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 75 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -95.01 _pdbx_validate_torsion.psi -147.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 47 ? A GLY 1 2 1 Y 1 A SER 48 ? A SER 2 3 1 Y 1 A SER 49 ? A SER 3 4 1 Y 1 A SER 50 ? A SER 4 5 1 Y 1 A GLY 51 ? A GLY 5 6 1 Y 1 A GLN 52 ? A GLN 6 7 1 Y 1 A SER 53 ? A SER 7 8 1 Y 1 A ASN 54 ? A ASN 8 9 1 Y 1 A ASN 55 ? A ASN 9 10 1 Y 1 A ASN 56 ? A ASN 10 11 1 Y 1 A SER 57 ? A SER 11 12 1 Y 1 A ASP 58 ? A ASP 12 13 1 Y 1 A THR 59 ? A THR 13 14 1 Y 1 A SER 77 ? A SER 31 15 1 Y 1 A GLU 78 ? A GLU 32 16 1 Y 1 A GLY 79 ? A GLY 33 17 1 Y 1 A LYS 80 ? A LYS 34 18 1 Y 1 A GLY 81 ? A GLY 35 19 1 Y 1 A LEU 195 ? A LEU 149 20 1 Y 1 A THR 196 ? A THR 150 21 1 Y 1 A SER 197 ? A SER 151 22 1 Y 1 A GLU 198 ? A GLU 152 23 1 Y 1 A LYS 199 ? A LYS 153 24 1 Y 1 A PRO 200 ? A PRO 154 25 1 Y 1 B GLY 165 ? B GLY 1 26 1 Y 1 B PRO 166 ? B PRO 2 27 1 Y 1 B LEU 167 ? B LEU 3 28 1 Y 1 B GLY 168 ? B GLY 4 29 1 Y 1 B SER 169 ? B SER 5 30 1 Y 1 B GLN 170 ? B GLN 6 31 1 Y 1 B SER 171 ? B SER 7 32 1 Y 1 B HIS 172 ? B HIS 8 33 1 Y 1 B PHE 173 ? B PHE 9 34 1 Y 1 B ILE 174 ? B ILE 10 35 1 Y 1 B PRO 175 ? B PRO 11 36 1 Y 1 B ALA 176 ? B ALA 12 37 1 Y 1 B LEU 177 ? B LEU 13 38 1 Y 1 B THR 197 ? B THR 33 39 1 Y 1 B GLU 198 ? B GLU 34 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 301 1 HOH HOH A . C 3 HOH 2 302 2 HOH HOH A . C 3 HOH 3 303 4 HOH HOH A . C 3 HOH 4 304 5 HOH HOH A . C 3 HOH 5 305 6 HOH HOH A . C 3 HOH 6 306 7 HOH HOH A . C 3 HOH 7 307 8 HOH HOH A . C 3 HOH 8 308 9 HOH HOH A . C 3 HOH 9 309 10 HOH HOH A . C 3 HOH 10 310 11 HOH HOH A . C 3 HOH 11 311 12 HOH HOH A . C 3 HOH 12 312 13 HOH HOH A . C 3 HOH 13 313 14 HOH HOH A . C 3 HOH 14 314 15 HOH HOH A . C 3 HOH 15 315 16 HOH HOH A . C 3 HOH 16 316 17 HOH HOH A . C 3 HOH 17 317 18 HOH HOH A . C 3 HOH 18 318 19 HOH HOH A . C 3 HOH 19 319 20 HOH HOH A . C 3 HOH 20 320 22 HOH HOH A . C 3 HOH 21 321 23 HOH HOH A . C 3 HOH 22 322 25 HOH HOH A . C 3 HOH 23 323 26 HOH HOH A . C 3 HOH 24 324 27 HOH HOH A . C 3 HOH 25 325 28 HOH HOH A . C 3 HOH 26 326 30 HOH HOH A . C 3 HOH 27 327 32 HOH HOH A . C 3 HOH 28 328 33 HOH HOH A . C 3 HOH 29 329 34 HOH HOH A . C 3 HOH 30 330 35 HOH HOH A . C 3 HOH 31 331 36 HOH HOH A . C 3 HOH 32 332 37 HOH HOH A . C 3 HOH 33 333 38 HOH HOH A . C 3 HOH 34 334 39 HOH HOH A . C 3 HOH 35 335 40 HOH HOH A . C 3 HOH 36 336 41 HOH HOH A . C 3 HOH 37 337 42 HOH HOH A . C 3 HOH 38 338 43 HOH HOH A . C 3 HOH 39 339 44 HOH HOH A . C 3 HOH 40 340 45 HOH HOH A . C 3 HOH 41 341 46 HOH HOH A . C 3 HOH 42 342 47 HOH HOH A . C 3 HOH 43 343 49 HOH HOH A . C 3 HOH 44 344 50 HOH HOH A . C 3 HOH 45 345 51 HOH HOH A . C 3 HOH 46 346 52 HOH HOH A . C 3 HOH 47 347 53 HOH HOH A . C 3 HOH 48 348 54 HOH HOH A . C 3 HOH 49 349 55 HOH HOH A . C 3 HOH 50 350 56 HOH HOH A . C 3 HOH 51 351 57 HOH HOH A . C 3 HOH 52 352 59 HOH HOH A . C 3 HOH 53 353 60 HOH HOH A . C 3 HOH 54 354 61 HOH HOH A . C 3 HOH 55 355 62 HOH HOH A . C 3 HOH 56 356 63 HOH HOH A . C 3 HOH 57 357 65 HOH HOH A . C 3 HOH 58 358 66 HOH HOH A . C 3 HOH 59 359 67 HOH HOH A . C 3 HOH 60 360 68 HOH HOH A . C 3 HOH 61 361 69 HOH HOH A . C 3 HOH 62 362 70 HOH HOH A . C 3 HOH 63 363 71 HOH HOH A . C 3 HOH 64 364 72 HOH HOH A . C 3 HOH 65 365 73 HOH HOH A . C 3 HOH 66 366 74 HOH HOH A . C 3 HOH 67 367 76 HOH HOH A . C 3 HOH 68 368 77 HOH HOH A . C 3 HOH 69 369 78 HOH HOH A . C 3 HOH 70 370 79 HOH HOH A . C 3 HOH 71 371 80 HOH HOH A . C 3 HOH 72 372 81 HOH HOH A . C 3 HOH 73 373 82 HOH HOH A . C 3 HOH 74 374 83 HOH HOH A . C 3 HOH 75 375 84 HOH HOH A . C 3 HOH 76 376 85 HOH HOH A . C 3 HOH 77 377 86 HOH HOH A . C 3 HOH 78 378 87 HOH HOH A . C 3 HOH 79 379 88 HOH HOH A . C 3 HOH 80 380 89 HOH HOH A . C 3 HOH 81 381 90 HOH HOH A . C 3 HOH 82 382 91 HOH HOH A . C 3 HOH 83 383 93 HOH HOH A . C 3 HOH 84 384 94 HOH HOH A . C 3 HOH 85 385 95 HOH HOH A . C 3 HOH 86 386 96 HOH HOH A . C 3 HOH 87 387 97 HOH HOH A . C 3 HOH 88 388 98 HOH HOH A . C 3 HOH 89 389 99 HOH HOH A . C 3 HOH 90 390 100 HOH HOH A . C 3 HOH 91 391 102 HOH HOH A . C 3 HOH 92 392 103 HOH HOH A . C 3 HOH 93 393 104 HOH HOH A . C 3 HOH 94 394 105 HOH HOH A . C 3 HOH 95 395 106 HOH HOH A . C 3 HOH 96 396 107 HOH HOH A . C 3 HOH 97 397 108 HOH HOH A . C 3 HOH 98 398 109 HOH HOH A . C 3 HOH 99 399 110 HOH HOH A . C 3 HOH 100 400 111 HOH HOH A . D 3 HOH 1 201 3 HOH HOH B . D 3 HOH 2 202 21 HOH HOH B . D 3 HOH 3 203 24 HOH HOH B . D 3 HOH 4 204 29 HOH HOH B . D 3 HOH 5 205 31 HOH HOH B . D 3 HOH 6 206 48 HOH HOH B . D 3 HOH 7 207 58 HOH HOH B . D 3 HOH 8 208 64 HOH HOH B . D 3 HOH 9 209 75 HOH HOH B . D 3 HOH 10 210 92 HOH HOH B . D 3 HOH 11 211 101 HOH HOH B . #