HEADER TRANSFERASE 07-MAR-13 4JIT TITLE CRYSTAL STRUCTURE OF E. COLI XGPRT IN COMPLEX WITH (S)-3-(GUANIN-9- TITLE 2 YL)PYRROLIDIN-N-YLACETYLPHOSPHONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: XANTHINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE; COMPND 5 EC: 2.4.2.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 1110693; SOURCE 4 STRAIN: STR. K-12 SUBSTR. MDS42; SOURCE 5 GENE: GPT, ECMDS42_0227; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE, PURINE SALVAGE, KEYWDS 2 NUCLEOSIDE PHOSPHONATE, ANTIBACTERIAL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.T.KEOUGH,D.HOCKOVA,D.REJMAN,P.SPACEK,S.VRBKOVA,M.KRECMEROVA, AUTHOR 2 W.S.ENG,H.JANS,N.P.WEST,L.M.J.NAESENS,J.DE JERSEY,L.W.GUDDAT REVDAT 2 28-FEB-24 4JIT 1 REMARK REVDAT 1 24-DEC-14 4JIT 0 JRNL AUTH D.T.KEOUGH,D.HOCKOVA,D.REJMAN,P.SPACEK,S.VRBKOVA, JRNL AUTH 2 M.KRECMEROVA,W.S.ENG,H.JANS,N.P.WEST,L.M.NAESENS, JRNL AUTH 3 J.DE JERSEY,L.W.GUDDAT JRNL TITL INHIBITION OF THE ESCHERICHIA COLI 6-OXOPURINE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASES BY NUCLEOSIDE PHOSPHONATES: JRNL TITL 3 POTENTIAL FOR NEW ANTIBACTERIAL AGENTS. JRNL REF J.MED.CHEM. V. 56 6967 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 23927482 JRNL DOI 10.1021/JM400779N REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18569 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8709 - 6.5119 1.00 1403 156 0.1725 0.2217 REMARK 3 2 6.5119 - 5.1992 1.00 1327 147 0.2114 0.2865 REMARK 3 3 5.1992 - 4.5510 1.00 1313 146 0.1923 0.2551 REMARK 3 4 4.5510 - 4.1390 1.00 1276 142 0.1808 0.2363 REMARK 3 5 4.1390 - 3.8446 1.00 1295 143 0.1964 0.2606 REMARK 3 6 3.8446 - 3.6194 1.00 1252 140 0.2098 0.2284 REMARK 3 7 3.6194 - 3.4391 1.00 1302 143 0.2293 0.3003 REMARK 3 8 3.4391 - 3.2901 1.00 1243 139 0.2411 0.3174 REMARK 3 9 3.2901 - 3.1639 1.00 1269 141 0.2409 0.2849 REMARK 3 10 3.1639 - 3.0552 1.00 1258 140 0.2433 0.3029 REMARK 3 11 3.0552 - 2.9600 1.00 1250 138 0.2494 0.3141 REMARK 3 12 2.9600 - 2.8756 1.00 1278 143 0.2739 0.3307 REMARK 3 13 2.8756 - 2.8000 1.00 1247 138 0.3101 0.3659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4669 REMARK 3 ANGLE : 0.860 6383 REMARK 3 CHIRALITY : 0.054 722 REMARK 3 PLANARITY : 0.003 817 REMARK 3 DIHEDRAL : 14.020 1679 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 3:151 ) OR ( CHAIN C AND ( RESID REMARK 3 3:152 OR RESID 201:201 OR RESID 301:301 ) ) OR ( REMARK 3 CHAIN B AND ( RESID 3:152 OR RESID 201:201 OR RESID REMARK 3 301:301 ) ) OR ( CHAIN D AND RESID 3:152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3803 24.8837 -2.2408 REMARK 3 T TENSOR REMARK 3 T11: 0.3744 T22: 0.4091 REMARK 3 T33: 0.5581 T12: 0.0200 REMARK 3 T13: -0.0326 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 1.1473 L22: 1.6511 REMARK 3 L33: 4.3733 L12: 0.0194 REMARK 3 L13: 0.1228 L23: 0.7866 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.3061 S13: -0.0922 REMARK 3 S21: 0.1975 S22: 0.1827 S23: -0.0604 REMARK 3 S31: 0.1808 S32: -0.0605 S33: -0.2462 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000078099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE, PH 7.0, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.31650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.03300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.03300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.97475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.03300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.03300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.65825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.03300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.03300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.97475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.03300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.03300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.65825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.31650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 152 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 SER D 62 REMARK 465 TYR D 63 REMARK 465 ASP D 64 REMARK 465 HIS D 65 REMARK 465 ASP D 66 REMARK 465 ASN D 67 REMARK 465 GLN D 68 REMARK 465 ARG D 69 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 65 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 SER A 150 OG REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 SER B 150 OG REMARK 470 LYS C 30 CG CD CE NZ REMARK 470 LYS C 72 CG CD CE NZ REMARK 470 GLU C 82 CG CD OE1 OE2 REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 LYS D 18 CG CD CE NZ REMARK 470 LYS D 30 CG CD CE NZ REMARK 470 ILE D 60 CG1 CG2 CD1 REMARK 470 GLU D 70 CG CD OE1 OE2 REMARK 470 LEU D 71 CG CD1 CD2 REMARK 470 LYS D 72 CG CD CE NZ REMARK 470 GLU D 82 CG CD OE1 OE2 REMARK 470 LYS D 106 CG CD CE NZ REMARK 470 ARG D 152 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 69 CG CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 93 OAE 3ZF B 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 -96.89 54.46 REMARK 500 PRO A 148 -175.54 -67.69 REMARK 500 ASP B 66 -122.98 55.32 REMARK 500 ASP B 92 -56.80 -124.32 REMARK 500 ASP C 66 -114.31 63.31 REMARK 500 ASP C 92 -70.44 -111.08 REMARK 500 VAL C 126 -54.07 -133.63 REMARK 500 GLU D 78 -158.71 -85.66 REMARK 500 ASP D 92 -80.32 -102.99 REMARK 500 THR D 93 -101.32 -77.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3ZF B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3ZF C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JLS RELATED DB: PDB DBREF 4JIT A 1 152 UNP H0Q6L9 H0Q6L9_ECOLI 1 152 DBREF 4JIT B 1 152 UNP H0Q6L9 H0Q6L9_ECOLI 1 152 DBREF 4JIT C 1 152 UNP H0Q6L9 H0Q6L9_ECOLI 1 152 DBREF 4JIT D 1 152 UNP H0Q6L9 H0Q6L9_ECOLI 1 152 SEQRES 1 A 152 MET SER GLU LYS TYR ILE VAL THR TRP ASP MET LEU GLN SEQRES 2 A 152 ILE HIS ALA ARG LYS LEU ALA SER ARG LEU MET PRO SER SEQRES 3 A 152 GLU GLN TRP LYS GLY ILE ILE ALA VAL SER ARG GLY GLY SEQRES 4 A 152 LEU VAL PRO GLY ALA LEU LEU ALA ARG GLU LEU GLY ILE SEQRES 5 A 152 ARG HIS VAL ASP THR VAL CYS ILE SER SER TYR ASP HIS SEQRES 6 A 152 ASP ASN GLN ARG GLU LEU LYS VAL LEU LYS ARG ALA GLU SEQRES 7 A 152 GLY ASP GLY GLU GLY PHE ILE VAL ILE ASP ASP LEU VAL SEQRES 8 A 152 ASP THR GLY GLY THR ALA VAL ALA ILE ARG GLU MET TYR SEQRES 9 A 152 PRO LYS ALA HIS PHE VAL THR ILE PHE ALA LYS PRO ALA SEQRES 10 A 152 GLY ARG PRO LEU VAL ASP ASP TYR VAL VAL ASP ILE PRO SEQRES 11 A 152 GLN ASP THR TRP ILE GLU GLN PRO TRP ASP MET GLY VAL SEQRES 12 A 152 VAL PHE VAL PRO PRO ILE SER GLY ARG SEQRES 1 B 152 MET SER GLU LYS TYR ILE VAL THR TRP ASP MET LEU GLN SEQRES 2 B 152 ILE HIS ALA ARG LYS LEU ALA SER ARG LEU MET PRO SER SEQRES 3 B 152 GLU GLN TRP LYS GLY ILE ILE ALA VAL SER ARG GLY GLY SEQRES 4 B 152 LEU VAL PRO GLY ALA LEU LEU ALA ARG GLU LEU GLY ILE SEQRES 5 B 152 ARG HIS VAL ASP THR VAL CYS ILE SER SER TYR ASP HIS SEQRES 6 B 152 ASP ASN GLN ARG GLU LEU LYS VAL LEU LYS ARG ALA GLU SEQRES 7 B 152 GLY ASP GLY GLU GLY PHE ILE VAL ILE ASP ASP LEU VAL SEQRES 8 B 152 ASP THR GLY GLY THR ALA VAL ALA ILE ARG GLU MET TYR SEQRES 9 B 152 PRO LYS ALA HIS PHE VAL THR ILE PHE ALA LYS PRO ALA SEQRES 10 B 152 GLY ARG PRO LEU VAL ASP ASP TYR VAL VAL ASP ILE PRO SEQRES 11 B 152 GLN ASP THR TRP ILE GLU GLN PRO TRP ASP MET GLY VAL SEQRES 12 B 152 VAL PHE VAL PRO PRO ILE SER GLY ARG SEQRES 1 C 152 MET SER GLU LYS TYR ILE VAL THR TRP ASP MET LEU GLN SEQRES 2 C 152 ILE HIS ALA ARG LYS LEU ALA SER ARG LEU MET PRO SER SEQRES 3 C 152 GLU GLN TRP LYS GLY ILE ILE ALA VAL SER ARG GLY GLY SEQRES 4 C 152 LEU VAL PRO GLY ALA LEU LEU ALA ARG GLU LEU GLY ILE SEQRES 5 C 152 ARG HIS VAL ASP THR VAL CYS ILE SER SER TYR ASP HIS SEQRES 6 C 152 ASP ASN GLN ARG GLU LEU LYS VAL LEU LYS ARG ALA GLU SEQRES 7 C 152 GLY ASP GLY GLU GLY PHE ILE VAL ILE ASP ASP LEU VAL SEQRES 8 C 152 ASP THR GLY GLY THR ALA VAL ALA ILE ARG GLU MET TYR SEQRES 9 C 152 PRO LYS ALA HIS PHE VAL THR ILE PHE ALA LYS PRO ALA SEQRES 10 C 152 GLY ARG PRO LEU VAL ASP ASP TYR VAL VAL ASP ILE PRO SEQRES 11 C 152 GLN ASP THR TRP ILE GLU GLN PRO TRP ASP MET GLY VAL SEQRES 12 C 152 VAL PHE VAL PRO PRO ILE SER GLY ARG SEQRES 1 D 152 MET SER GLU LYS TYR ILE VAL THR TRP ASP MET LEU GLN SEQRES 2 D 152 ILE HIS ALA ARG LYS LEU ALA SER ARG LEU MET PRO SER SEQRES 3 D 152 GLU GLN TRP LYS GLY ILE ILE ALA VAL SER ARG GLY GLY SEQRES 4 D 152 LEU VAL PRO GLY ALA LEU LEU ALA ARG GLU LEU GLY ILE SEQRES 5 D 152 ARG HIS VAL ASP THR VAL CYS ILE SER SER TYR ASP HIS SEQRES 6 D 152 ASP ASN GLN ARG GLU LEU LYS VAL LEU LYS ARG ALA GLU SEQRES 7 D 152 GLY ASP GLY GLU GLY PHE ILE VAL ILE ASP ASP LEU VAL SEQRES 8 D 152 ASP THR GLY GLY THR ALA VAL ALA ILE ARG GLU MET TYR SEQRES 9 D 152 PRO LYS ALA HIS PHE VAL THR ILE PHE ALA LYS PRO ALA SEQRES 10 D 152 GLY ARG PRO LEU VAL ASP ASP TYR VAL VAL ASP ILE PRO SEQRES 11 D 152 GLN ASP THR TRP ILE GLU GLN PRO TRP ASP MET GLY VAL SEQRES 12 D 152 VAL PHE VAL PRO PRO ILE SER GLY ARG HET 3ZF B 201 23 HET 3ZF C 201 23 HETNAM 3ZF {2-[(3S)-3-(2-AMINO-6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL) HETNAM 2 3ZF PYRROLIDIN-1-YL]-2-OXOETHYL}PHOSPHONIC ACID FORMUL 5 3ZF 2(C11 H15 N6 O5 P) FORMUL 7 HOH *2(H2 O) HELIX 1 1 THR A 8 ARG A 22 1 15 HELIX 2 2 LEU A 23 MET A 24 5 2 HELIX 3 3 PRO A 25 TRP A 29 5 5 HELIX 4 4 GLY A 39 GLY A 51 1 13 HELIX 5 5 GLY A 94 TYR A 104 1 11 HELIX 6 6 PRO A 116 VAL A 122 5 7 HELIX 7 7 GLN A 137 TRP A 139 5 3 HELIX 8 8 THR B 8 LEU B 23 1 16 HELIX 9 9 MET B 24 TRP B 29 5 6 HELIX 10 10 GLY B 39 LEU B 50 1 12 HELIX 11 11 GLY B 94 TYR B 104 1 11 HELIX 12 12 GLY B 118 VAL B 122 5 5 HELIX 13 13 GLN B 137 TRP B 139 5 3 HELIX 14 14 THR C 8 LEU C 23 1 16 HELIX 15 15 GLY C 39 LEU C 50 1 12 HELIX 16 16 GLY C 94 TYR C 104 1 11 HELIX 17 17 GLY C 118 VAL C 122 5 5 HELIX 18 18 GLN C 137 TRP C 139 5 3 HELIX 19 19 THR D 8 LEU D 23 1 16 HELIX 20 20 PRO D 25 TRP D 29 5 5 HELIX 21 21 GLY D 39 LEU D 50 1 12 HELIX 22 22 GLY D 94 TYR D 104 1 11 HELIX 23 23 GLY D 118 VAL D 122 5 5 HELIX 24 24 GLN D 137 TRP D 139 5 3 SHEET 1 A 2 LYS A 4 ILE A 6 0 SHEET 2 A 2 TRP A 134 GLU A 136 1 O GLU A 136 N TYR A 5 SHEET 1 B 6 GLN A 68 LYS A 75 0 SHEET 2 B 6 VAL A 55 HIS A 65 -1 N TYR A 63 O GLU A 70 SHEET 3 B 6 GLY A 31 SER A 36 1 N ILE A 32 O ASP A 56 SHEET 4 B 6 PHE A 84 VAL A 91 1 O ILE A 85 N ILE A 33 SHEET 5 B 6 HIS A 108 ALA A 114 1 O VAL A 110 N VAL A 86 SHEET 6 B 6 VAL A 127 ASP A 128 1 O VAL A 127 N ILE A 112 SHEET 1 C 2 MET A 141 PHE A 145 0 SHEET 2 C 2 MET D 141 PHE D 145 -1 O GLY D 142 N VAL A 144 SHEET 1 D 2 LYS B 4 ILE B 6 0 SHEET 2 D 2 TRP B 134 GLU B 136 1 O TRP B 134 N TYR B 5 SHEET 1 E 6 GLN B 68 LYS B 75 0 SHEET 2 E 6 VAL B 55 HIS B 65 -1 N SER B 61 O LYS B 72 SHEET 3 E 6 GLY B 31 SER B 36 1 N ILE B 32 O ASP B 56 SHEET 4 E 6 PHE B 84 VAL B 91 1 O ILE B 85 N ILE B 33 SHEET 5 E 6 HIS B 108 ALA B 114 1 O VAL B 110 N VAL B 86 SHEET 6 E 6 VAL B 127 ASP B 128 1 O VAL B 127 N ILE B 112 SHEET 1 F 2 MET B 141 PHE B 145 0 SHEET 2 F 2 MET C 141 PHE C 145 -1 O VAL C 144 N GLY B 142 SHEET 1 G 2 TYR C 5 ILE C 6 0 SHEET 2 G 2 ILE C 135 GLU C 136 1 O GLU C 136 N TYR C 5 SHEET 1 H 6 GLN C 68 LYS C 75 0 SHEET 2 H 6 VAL C 55 HIS C 65 -1 N SER C 61 O LYS C 72 SHEET 3 H 6 GLY C 31 SER C 36 1 N ALA C 34 O ASP C 56 SHEET 4 H 6 PHE C 84 VAL C 91 1 O ILE C 85 N ILE C 33 SHEET 5 H 6 HIS C 108 ALA C 114 1 O VAL C 110 N VAL C 86 SHEET 6 H 6 VAL C 127 ASP C 128 1 O VAL C 127 N ILE C 112 SHEET 1 I 2 TYR D 5 ILE D 6 0 SHEET 2 I 2 ILE D 135 GLU D 136 1 O GLU D 136 N TYR D 5 SHEET 1 J 6 VAL D 73 LYS D 75 0 SHEET 2 J 6 VAL D 55 ILE D 60 -1 N CYS D 59 O LEU D 74 SHEET 3 J 6 GLY D 31 VAL D 35 1 N ALA D 34 O ASP D 56 SHEET 4 J 6 PHE D 84 VAL D 91 1 O ILE D 85 N ILE D 33 SHEET 5 J 6 HIS D 108 ALA D 114 1 O VAL D 110 N VAL D 86 SHEET 6 J 6 VAL D 127 ASP D 128 1 O VAL D 127 N ILE D 112 CISPEP 1 MET A 24 PRO A 25 0 -4.86 CISPEP 2 SER A 36 ARG A 37 0 2.08 CISPEP 3 MET B 24 PRO B 25 0 4.18 CISPEP 4 SER B 36 ARG B 37 0 5.77 CISPEP 5 MET C 24 PRO C 25 0 0.54 CISPEP 6 SER C 36 ARG C 37 0 -1.43 CISPEP 7 GLY C 151 ARG C 152 0 2.07 CISPEP 8 MET D 24 PRO D 25 0 -0.52 CISPEP 9 SER D 36 ARG D 37 0 2.70 SITE 1 AC1 11 ARG B 69 LEU B 90 ASP B 92 THR B 93 SITE 2 AC1 11 GLY B 94 GLY B 95 THR B 96 TRP B 134 SITE 3 AC1 11 ILE B 135 ASP B 140 HOH B 301 SITE 1 AC2 12 ARG C 69 LEU C 90 VAL C 91 ASP C 92 SITE 2 AC2 12 THR C 93 GLY C 94 GLY C 95 THR C 96 SITE 3 AC2 12 LYS C 115 TRP C 134 ILE C 135 HOH C 301 CRYST1 94.066 94.066 162.633 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010631 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006149 0.00000