HEADER CELL ADHESION 07-MAR-13 4JJH TITLE CRYSTAL STRUCTURE OF THE D1 DOMAIN FROM HUMAN NECTIN-4 EXTRACELLULAR TITLE 2 FRAGMENT [PSI-NYSGRC-005624] COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLIOVIRUS RECEPTOR-RELATED PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: D1 DOMAIN (UNP RESIDUES 32-153); COMPND 5 SYNONYM: IG SUPERFAMILY RECEPTOR LNIR, NECTIN-4, PROCESSED POLIOVIRUS COMPND 6 RECEPTOR-RELATED PROTEIN 4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LNIR, NECTIN-4, PRR4, PVRL4; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIEX KEYWDS NECTIN-4, IG-LIKE D1 DOMAIN, IG SUPERFAMILY, IMMUNE SYSTEM, CELL KEYWDS 2 ADHESION, STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 3 GENOMICS RESEARCH CONSORTIUM, NYSGRC, ATOMS-TO-ANIMALS: THE IMMUNE KEYWDS 4 FUNCTION NETWORK, IFN EXPDTA X-RAY DIFFRACTION AUTHOR P.R.KUMAR,J.BONANNO,M.AHMED,R.BANU,R.BHOSLE,D.CALARESE,A.CELIKIGIL, AUTHOR 2 S.CHAMALA,M.K.CHAN,S.CHOWDHURY,A.FISER,S.GARFORTH,A.S.GLENN, AUTHOR 3 B.HILLERICH,K.KHAFIZOV,J.LOVE,H.PATEL,R.SEIDEL,M.STEAD,R.TORO, AUTHOR 4 S.G.NATHENSON,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 5 CONSORTIUM (NYSGRC),ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK AUTHOR 6 (IFN) REVDAT 5 06-NOV-24 4JJH 1 REMARK REVDAT 4 20-SEP-23 4JJH 1 REMARK SEQADV REVDAT 3 15-NOV-17 4JJH 1 REMARK REVDAT 2 27-NOV-13 4JJH 1 KEYWDS REVDAT 1 27-MAR-13 4JJH 0 JRNL AUTH P.R.KUMAR,S.G.NATHENSON,S.C.ALMO, JRNL AUTH 2 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC), JRNL AUTH 3 ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK (IFN) JRNL TITL CRYSTAL STRUCTURE OF THE D1 DOMAIN OF HUMAN NECTIN-4 JRNL TITL 2 EXTRACELLULAR FRAGMENT [NYSGRC-005624] JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 11454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720 REMARK 3 FREE R VALUE TEST SET COUNT : 541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 15.6931 - 3.5657 0.86 2520 128 0.1907 0.2766 REMARK 3 2 3.5657 - 2.8356 0.94 2800 140 0.2336 0.3208 REMARK 3 3 2.8356 - 2.4788 0.95 2740 147 0.2463 0.2878 REMARK 3 4 2.4788 - 2.2529 0.96 2805 125 0.2551 0.3010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1765 REMARK 3 ANGLE : 1.488 2400 REMARK 3 CHIRALITY : 0.055 269 REMARK 3 PLANARITY : 0.008 319 REMARK 3 DIHEDRAL : 15.216 659 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8380 16.8543 8.8493 REMARK 3 T TENSOR REMARK 3 T11: 0.3675 T22: 0.1034 REMARK 3 T33: 0.1464 T12: 0.0593 REMARK 3 T13: 0.0403 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.6044 L22: 0.3371 REMARK 3 L33: 1.9620 L12: 0.6878 REMARK 3 L13: -0.6024 L23: -0.4122 REMARK 3 S TENSOR REMARK 3 S11: 0.1437 S12: -0.0385 S13: 0.0170 REMARK 3 S21: -0.3051 S22: -0.1328 S23: -0.0295 REMARK 3 S31: 0.1291 S32: 0.3278 S33: -0.0947 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 93) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4242 30.1113 8.3973 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.1693 REMARK 3 T33: 0.1382 T12: -0.0291 REMARK 3 T13: 0.0608 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9495 L22: 2.4122 REMARK 3 L33: 1.6564 L12: 0.3743 REMARK 3 L13: 0.2047 L23: -0.4364 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: 0.2011 S13: 0.3479 REMARK 3 S21: -0.4060 S22: -0.0390 S23: 0.2041 REMARK 3 S31: -0.2627 S32: -0.0859 S33: -0.0956 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1193 24.0951 15.6561 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.1120 REMARK 3 T33: 0.1532 T12: -0.0395 REMARK 3 T13: 0.0148 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.0956 L22: 1.1282 REMARK 3 L33: 2.2514 L12: -0.3116 REMARK 3 L13: -0.5076 L23: -0.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.3350 S12: -0.3084 S13: 0.2572 REMARK 3 S21: 0.0141 S22: -0.1546 S23: -0.0131 REMARK 3 S31: -0.2177 S32: 0.3006 S33: -0.0958 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2954 15.8873 9.3497 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.2189 REMARK 3 T33: 0.0338 T12: 0.0301 REMARK 3 T13: -0.0795 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.7936 L22: 1.5272 REMARK 3 L33: 1.5600 L12: -0.2934 REMARK 3 L13: 0.0892 L23: -0.8917 REMARK 3 S TENSOR REMARK 3 S11: 0.1292 S12: 0.0041 S13: -0.0649 REMARK 3 S21: -0.5916 S22: -0.0161 S23: 0.2213 REMARK 3 S31: 0.0600 S32: 0.0442 S33: 0.3348 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7874 10.9231 34.0479 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.3067 REMARK 3 T33: 0.1396 T12: 0.0298 REMARK 3 T13: -0.0106 T23: -0.0786 REMARK 3 L TENSOR REMARK 3 L11: 0.9405 L22: 1.2080 REMARK 3 L33: 2.1200 L12: 0.8592 REMARK 3 L13: 1.3006 L23: 0.8145 REMARK 3 S TENSOR REMARK 3 S11: -0.0312 S12: -0.5123 S13: 0.0182 REMARK 3 S21: 0.1830 S22: 0.1530 S23: -0.1276 REMARK 3 S31: -0.3007 S32: -0.0872 S33: -0.0500 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7509 4.7662 33.9077 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.3006 REMARK 3 T33: 0.1169 T12: 0.0218 REMARK 3 T13: 0.0057 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.5470 L22: 0.8658 REMARK 3 L33: 2.1579 L12: -0.8312 REMARK 3 L13: -0.2359 L23: -0.3603 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.2065 S13: -0.5370 REMARK 3 S21: 0.2632 S22: 0.1527 S23: -0.1516 REMARK 3 S31: -0.1648 S32: 0.2274 S33: -0.0915 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0507 9.6830 26.7705 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2030 REMARK 3 T33: 0.1351 T12: 0.0298 REMARK 3 T13: -0.0055 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 1.9353 L22: 1.3198 REMARK 3 L33: 1.5667 L12: 0.3840 REMARK 3 L13: 0.3894 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.4456 S12: 0.0550 S13: 0.0486 REMARK 3 S21: 0.0358 S22: 0.4062 S23: 0.0562 REMARK 3 S31: -0.1809 S32: 0.4411 S33: 0.0672 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6869 3.7562 32.7558 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.3584 REMARK 3 T33: 0.0975 T12: -0.0193 REMARK 3 T13: 0.0871 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.9003 L22: 1.1678 REMARK 3 L33: 1.5080 L12: 0.8132 REMARK 3 L13: 0.6197 L23: 0.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.4351 S13: -0.2405 REMARK 3 S21: 0.0799 S22: -0.1070 S23: -0.0985 REMARK 3 S31: 0.0228 S32: -0.0946 S33: 0.1908 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.26200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: 4FRW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL; RESERVOIR (0.1M SODIUM CHLORIDE, 0.1M BIS- REMARK 280 TRIS:HCL, PH 6.5); CRYOPROTECTION (RESERVOIR + FINAL REMARK 280 CONCENTRATION OF 20%(V/V) ETHYLENE GLYCOL), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.66550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.33275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.99825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 27 REMARK 465 ASP A 28 REMARK 465 TYR A 29 REMARK 465 GLY A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 GLU A 33 REMARK 465 LEU A 34 REMARK 465 GLU A 35 REMARK 465 SER A 58 REMARK 465 GLY A 59 REMARK 465 ASP A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 74 REMARK 465 GLY A 75 REMARK 465 ALA A 154 REMARK 465 GLU A 155 REMARK 465 ASN A 156 REMARK 465 LEU A 157 REMARK 465 TYR A 158 REMARK 465 PHE A 159 REMARK 465 GLN B 27 REMARK 465 ASP B 28 REMARK 465 TYR B 29 REMARK 465 GLY B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 32 REMARK 465 GLU B 33 REMARK 465 LEU B 34 REMARK 465 GLU B 35 REMARK 465 GLY B 56 REMARK 465 ASP B 71 REMARK 465 ALA B 72 REMARK 465 GLY B 73 REMARK 465 GLU B 74 REMARK 465 GLY B 75 REMARK 465 ALA B 154 REMARK 465 GLU B 155 REMARK 465 ASN B 156 REMARK 465 LEU B 157 REMARK 465 TYR B 158 REMARK 465 PHE B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 52 79.43 -151.49 REMARK 500 ASN A 116 73.46 54.30 REMARK 500 ALA A 134 -2.69 -144.13 REMARK 500 SER B 58 -106.37 69.33 REMARK 500 ASN B 116 74.65 59.22 REMARK 500 ALA B 134 -4.42 -145.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-005624 RELATED DB: TARGETTRACK DBREF 4JJH A 32 153 UNP Q96NY8 PVRL4_HUMAN 32 153 DBREF 4JJH B 32 153 UNP Q96NY8 PVRL4_HUMAN 32 153 SEQADV 4JJH GLN A 27 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH ASP A 28 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH TYR A 29 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLY A 30 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLY A 31 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH ALA A 154 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLU A 155 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH ASN A 156 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH LEU A 157 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH TYR A 158 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH PHE A 159 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLN B 27 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH ASP B 28 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH TYR B 29 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLY B 30 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLY B 31 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH ALA B 154 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH GLU B 155 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH ASN B 156 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH LEU B 157 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH TYR B 158 UNP Q96NY8 EXPRESSION TAG SEQADV 4JJH PHE B 159 UNP Q96NY8 EXPRESSION TAG SEQRES 1 A 133 GLN ASP TYR GLY GLY GLY GLU LEU GLU THR SER ASP VAL SEQRES 2 A 133 VAL THR VAL VAL LEU GLY GLN ASP ALA LYS LEU PRO CYS SEQRES 3 A 133 PHE TYR ARG GLY ASP SER GLY GLU GLN VAL GLY GLN VAL SEQRES 4 A 133 ALA TRP ALA ARG VAL ASP ALA GLY GLU GLY ALA GLN GLU SEQRES 5 A 133 LEU ALA LEU LEU HIS SER LYS TYR GLY LEU HIS VAL SER SEQRES 6 A 133 PRO ALA TYR GLU GLY ARG VAL GLU GLN PRO PRO PRO PRO SEQRES 7 A 133 ARG ASN PRO LEU ASP GLY SER VAL LEU LEU ARG ASN ALA SEQRES 8 A 133 VAL GLN ALA ASP GLU GLY GLU TYR GLU CYS ARG VAL SER SEQRES 9 A 133 THR PHE PRO ALA GLY SER PHE GLN ALA ARG LEU ARG LEU SEQRES 10 A 133 ARG VAL LEU VAL PRO PRO LEU PRO SER LEU ALA GLU ASN SEQRES 11 A 133 LEU TYR PHE SEQRES 1 B 133 GLN ASP TYR GLY GLY GLY GLU LEU GLU THR SER ASP VAL SEQRES 2 B 133 VAL THR VAL VAL LEU GLY GLN ASP ALA LYS LEU PRO CYS SEQRES 3 B 133 PHE TYR ARG GLY ASP SER GLY GLU GLN VAL GLY GLN VAL SEQRES 4 B 133 ALA TRP ALA ARG VAL ASP ALA GLY GLU GLY ALA GLN GLU SEQRES 5 B 133 LEU ALA LEU LEU HIS SER LYS TYR GLY LEU HIS VAL SER SEQRES 6 B 133 PRO ALA TYR GLU GLY ARG VAL GLU GLN PRO PRO PRO PRO SEQRES 7 B 133 ARG ASN PRO LEU ASP GLY SER VAL LEU LEU ARG ASN ALA SEQRES 8 B 133 VAL GLN ALA ASP GLU GLY GLU TYR GLU CYS ARG VAL SER SEQRES 9 B 133 THR PHE PRO ALA GLY SER PHE GLN ALA ARG LEU ARG LEU SEQRES 10 B 133 ARG VAL LEU VAL PRO PRO LEU PRO SER LEU ALA GLU ASN SEQRES 11 B 133 LEU TYR PHE HET EDO A 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *(H2 O) HELIX 1 1 PRO A 92 GLU A 95 5 4 HELIX 2 2 VAL A 118 GLU A 122 5 5 HELIX 3 3 PRO B 92 GLU B 95 5 4 HELIX 4 4 VAL B 118 GLU B 122 5 5 SHEET 1 A 6 VAL A 39 VAL A 43 0 SHEET 2 A 6 SER A 136 LEU A 146 1 O ARG A 144 N VAL A 40 SHEET 3 A 6 GLY A 123 THR A 131 -1 N VAL A 129 O PHE A 137 SHEET 4 A 6 VAL A 62 ARG A 69 -1 N ALA A 66 O ARG A 128 SHEET 5 A 6 GLN A 77 HIS A 83 -1 O LEU A 79 N TRP A 67 SHEET 6 A 6 GLY A 87 VAL A 90 -1 O HIS A 89 N LEU A 81 SHEET 1 B 3 ALA A 48 LEU A 50 0 SHEET 2 B 3 VAL A 112 LEU A 114 -1 O VAL A 112 N LEU A 50 SHEET 3 B 3 VAL A 98 GLU A 99 -1 N GLU A 99 O LEU A 113 SHEET 1 C 6 VAL B 39 VAL B 43 0 SHEET 2 C 6 SER B 136 LEU B 146 1 O ARG B 142 N VAL B 40 SHEET 3 C 6 GLY B 123 PHE B 132 -1 N GLY B 123 O LEU B 143 SHEET 4 C 6 GLN B 61 ARG B 69 -1 N GLN B 61 O PHE B 132 SHEET 5 C 6 GLN B 77 HIS B 83 -1 O GLN B 77 N ARG B 69 SHEET 6 C 6 GLY B 87 VAL B 90 -1 O HIS B 89 N LEU B 81 SHEET 1 D 3 ALA B 48 LEU B 50 0 SHEET 2 D 3 VAL B 112 LEU B 114 -1 O VAL B 112 N LEU B 50 SHEET 3 D 3 VAL B 98 GLU B 99 -1 N GLU B 99 O LEU B 113 SSBOND 1 CYS A 52 CYS A 127 1555 1555 2.03 SSBOND 2 CYS B 52 CYS B 127 1555 1555 2.02 CISPEP 1 PRO A 103 PRO A 104 0 3.04 CISPEP 2 PHE A 132 PRO A 133 0 -6.27 CISPEP 3 PRO B 103 PRO B 104 0 -0.78 CISPEP 4 PHE B 132 PRO B 133 0 -8.61 SITE 1 AC1 4 VAL A 90 GLU A 95 GLY A 96 VAL B 147 CRYST1 35.193 35.193 205.331 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004870 0.00000