HEADER TRANSFERASE 12-MAR-13 4JL5 TITLE A HIGH RESOLUTION STRUCTURE OF AQUIFEX ADENYLATE KINASE WITH 2 ADP'S COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK, ATP-AMP TRANSPHOSPHORYLASE; COMPND 5 EC: 2.7.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: ADK, AQ_078; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, PHOSPHORYL TRANSFER EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.CHO,D.KERN REVDAT 4 28-FEB-24 4JL5 1 REMARK REVDAT 3 18-FEB-15 4JL5 1 JRNL REVDAT 2 28-JAN-15 4JL5 1 JRNL REVDAT 1 25-JUN-14 4JL5 0 JRNL AUTH S.J.KERNS,R.V.AGAFONOV,Y.J.CHO,F.PONTIGGIA,R.OTTEN, JRNL AUTH 2 D.V.PACHOV,S.KUTTER,L.A.PHUNG,P.N.MURPHY,V.THAI,T.ALBER, JRNL AUTH 3 M.F.HAGAN,D.KERN JRNL TITL THE ENERGY LANDSCAPE OF ADENYLATE KINASE DURING CATALYSIS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 22 124 2015 JRNL REFN ISSN 1545-9993 JRNL PMID 25580578 JRNL DOI 10.1038/NSMB.2941 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 111278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9694 - 3.8501 0.99 3760 199 0.1519 0.1549 REMARK 3 2 3.8501 - 3.0570 1.00 3671 181 0.1385 0.1721 REMARK 3 3 3.0570 - 2.6709 1.00 3572 211 0.1460 0.1626 REMARK 3 4 2.6709 - 2.4268 1.00 3635 167 0.1417 0.1633 REMARK 3 5 2.4268 - 2.2529 1.00 3565 200 0.1277 0.1636 REMARK 3 6 2.2529 - 2.1201 1.00 3580 173 0.1290 0.1475 REMARK 3 7 2.1201 - 2.0140 1.00 3568 207 0.1254 0.1473 REMARK 3 8 2.0140 - 1.9263 1.00 3535 193 0.1224 0.1448 REMARK 3 9 1.9263 - 1.8522 1.00 3553 191 0.1275 0.1478 REMARK 3 10 1.8522 - 1.7883 1.00 3512 207 0.1254 0.1354 REMARK 3 11 1.7883 - 1.7324 1.00 3582 171 0.1161 0.1552 REMARK 3 12 1.7324 - 1.6829 1.00 3526 187 0.1147 0.1545 REMARK 3 13 1.6829 - 1.6386 1.00 3541 182 0.1099 0.1372 REMARK 3 14 1.6386 - 1.5986 1.00 3533 183 0.1053 0.1509 REMARK 3 15 1.5986 - 1.5623 1.00 3556 176 0.1042 0.1335 REMARK 3 16 1.5623 - 1.5290 1.00 3519 159 0.1092 0.1594 REMARK 3 17 1.5290 - 1.4984 1.00 3512 189 0.1088 0.1418 REMARK 3 18 1.4984 - 1.4702 1.00 3505 191 0.1094 0.1488 REMARK 3 19 1.4702 - 1.4439 1.00 3514 185 0.1123 0.1500 REMARK 3 20 1.4439 - 1.4194 1.00 3483 201 0.1120 0.1849 REMARK 3 21 1.4194 - 1.3965 1.00 3526 184 0.1117 0.1556 REMARK 3 22 1.3965 - 1.3750 1.00 3523 174 0.1153 0.1583 REMARK 3 23 1.3750 - 1.3548 1.00 3512 185 0.1183 0.1859 REMARK 3 24 1.3548 - 1.3357 1.00 3480 196 0.1207 0.1712 REMARK 3 25 1.3357 - 1.3177 1.00 3512 186 0.1183 0.1694 REMARK 3 26 1.3177 - 1.3006 1.00 3505 192 0.1238 0.1824 REMARK 3 27 1.3006 - 1.2843 1.00 3467 196 0.1333 0.1954 REMARK 3 28 1.2843 - 1.2688 0.99 3484 178 0.1423 0.1868 REMARK 3 29 1.2688 - 1.2541 0.94 3301 178 0.1546 0.2167 REMARK 3 30 1.2541 - 1.2400 0.90 3166 158 0.1572 0.2126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.41 REMARK 3 K_SOL : 0.44 REMARK 3 B_SOL : 46.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20670 REMARK 3 B22 (A**2) : -0.20330 REMARK 3 B33 (A**2) : -0.00340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3741 REMARK 3 ANGLE : 1.501 5112 REMARK 3 CHIRALITY : 0.077 554 REMARK 3 PLANARITY : 0.008 656 REMARK 3 DIHEDRAL : 17.265 1522 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.99186 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 28.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE, 0.2M REMARK 280 AMMONIUM ACETATE, 30% W/V POLYETHYLENE GLYCOL 4000, 20MM MGCL2, REMARK 280 20MM ADP , PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.08500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.08500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 50 O HOH A 681 1.07 REMARK 500 HH11 ARG A 166 O HOH A 760 1.26 REMARK 500 HE ARG B 196 O HOH B 665 1.37 REMARK 500 HE ARG A 183 O HOH A 790 1.52 REMARK 500 HH21 ARG B 19 O HOH B 746 1.53 REMARK 500 O HOH B 744 O HOH B 760 1.82 REMARK 500 O HOH A 655 O HOH A 728 1.82 REMARK 500 O HOH A 761 O HOH A 776 1.85 REMARK 500 O HOH A 711 O HOH A 713 1.87 REMARK 500 O HOH A 705 O HOH A 756 1.89 REMARK 500 O HOH B 796 O HOH B 801 1.91 REMARK 500 O HOH A 753 O HOH A 756 1.92 REMARK 500 NZ LYS A 50 O HOH A 681 1.93 REMARK 500 O HOH B 767 O HOH B 795 1.96 REMARK 500 O HOH B 626 O HOH B 689 1.96 REMARK 500 OE2 GLU A 156 O HOH A 762 1.97 REMARK 500 O HOH A 548 O HOH A 610 1.98 REMARK 500 O HOH A 778 O HOH A 779 1.99 REMARK 500 O HOH B 774 O HOH B 779 2.00 REMARK 500 NH1 ARG A 166 O HOH A 760 2.00 REMARK 500 O HOH A 592 O HOH A 780 2.00 REMARK 500 O HOH B 608 O HOH B 738 2.03 REMARK 500 O HOH B 523 O HOH B 565 2.03 REMARK 500 O HOH B 470 O HOH B 722 2.04 REMARK 500 O HOH B 449 O HOH B 685 2.06 REMARK 500 O HOH A 708 O HOH A 789 2.06 REMARK 500 O HOH A 699 O HOH A 728 2.07 REMARK 500 O HOH B 532 O HOH B 725 2.07 REMARK 500 OG SER B 122 O HOH B 744 2.08 REMARK 500 OE1 GLU B 37 O HOH B 583 2.09 REMARK 500 O HOH B 545 O HOH B 722 2.10 REMARK 500 O HOH A 738 O HOH A 763 2.10 REMARK 500 OE1 GLU A 23 O HOH A 647 2.10 REMARK 500 OE2 GLU A 200 O HOH A 618 2.10 REMARK 500 O HOH A 766 O HOH A 785 2.12 REMARK 500 O HOH B 465 O HOH B 790 2.14 REMARK 500 O HOH B 588 O HOH B 602 2.14 REMARK 500 O GLY A 203 O HOH A 772 2.16 REMARK 500 O HOH A 439 O HOH A 753 2.16 REMARK 500 O HOH A 611 O HOH A 676 2.16 REMARK 500 OE2 GLU B 98 O HOH B 761 2.17 REMARK 500 O HOH A 581 O HOH A 650 2.17 REMARK 500 OE1 GLU B 111 O HOH B 798 2.18 REMARK 500 O HOH B 590 O HOH B 780 2.18 REMARK 500 O HOH B 479 O HOH B 730 2.18 REMARK 500 NE ARG B 196 O HOH B 665 2.19 REMARK 500 O HOH A 562 O HOH A 778 2.19 REMARK 500 O HOH B 509 O HOH B 783 2.19 REMARK 500 O HOH B 800 O HOH B 801 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 777 O HOH B 779 2445 1.87 REMARK 500 O HOH A 780 O HOH B 793 3555 1.92 REMARK 500 O HOH A 708 O HOH B 748 2445 1.99 REMARK 500 O HOH A 472 O HOH B 594 3555 2.10 REMARK 500 O HOH A 646 O HOH B 717 4445 2.14 REMARK 500 O HOH A 587 O HOH B 761 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 73.04 -163.23 REMARK 500 ASN B 139 71.58 -164.26 REMARK 500 ASP B 153 49.78 -93.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 302 DBREF 4JL5 A 1 203 UNP O66490 KAD_AQUAE 1 203 DBREF 4JL5 B 1 203 UNP O66490 KAD_AQUAE 1 203 SEQRES 1 A 203 MET ILE LEU VAL PHE LEU GLY PRO PRO GLY ALA GLY LYS SEQRES 2 A 203 GLY THR GLN ALA LYS ARG LEU ALA LYS GLU LYS GLY PHE SEQRES 3 A 203 VAL HIS ILE SER THR GLY ASP ILE LEU ARG GLU ALA VAL SEQRES 4 A 203 GLN LYS GLY THR PRO LEU GLY LYS LYS ALA LYS GLU TYR SEQRES 5 A 203 MET GLU ARG GLY GLU LEU VAL PRO ASP ASP LEU ILE ILE SEQRES 6 A 203 ALA LEU ILE GLU GLU VAL PHE PRO LYS HIS GLY ASN VAL SEQRES 7 A 203 ILE PHE ASP GLY PHE PRO ARG THR VAL LYS GLN ALA GLU SEQRES 8 A 203 ALA LEU ASP GLU MET LEU GLU LYS LYS GLY LEU LYS VAL SEQRES 9 A 203 ASP HIS VAL LEU LEU PHE GLU VAL PRO ASP GLU VAL VAL SEQRES 10 A 203 ILE GLU ARG LEU SER GLY ARG ARG ILE ASN PRO GLU THR SEQRES 11 A 203 GLY GLU VAL TYR HIS VAL LYS TYR ASN PRO PRO PRO PRO SEQRES 12 A 203 GLY VAL LYS VAL ILE GLN ARG GLU ASP ASP LYS PRO GLU SEQRES 13 A 203 VAL ILE LYS LYS ARG LEU GLU VAL TYR ARG GLU GLN THR SEQRES 14 A 203 ALA PRO LEU ILE GLU TYR TYR LYS LYS LYS GLY ILE LEU SEQRES 15 A 203 ARG ILE ILE ASP ALA SER LYS PRO VAL GLU GLU VAL TYR SEQRES 16 A 203 ARG GLN VAL LEU GLU VAL ILE GLY SEQRES 1 B 203 MET ILE LEU VAL PHE LEU GLY PRO PRO GLY ALA GLY LYS SEQRES 2 B 203 GLY THR GLN ALA LYS ARG LEU ALA LYS GLU LYS GLY PHE SEQRES 3 B 203 VAL HIS ILE SER THR GLY ASP ILE LEU ARG GLU ALA VAL SEQRES 4 B 203 GLN LYS GLY THR PRO LEU GLY LYS LYS ALA LYS GLU TYR SEQRES 5 B 203 MET GLU ARG GLY GLU LEU VAL PRO ASP ASP LEU ILE ILE SEQRES 6 B 203 ALA LEU ILE GLU GLU VAL PHE PRO LYS HIS GLY ASN VAL SEQRES 7 B 203 ILE PHE ASP GLY PHE PRO ARG THR VAL LYS GLN ALA GLU SEQRES 8 B 203 ALA LEU ASP GLU MET LEU GLU LYS LYS GLY LEU LYS VAL SEQRES 9 B 203 ASP HIS VAL LEU LEU PHE GLU VAL PRO ASP GLU VAL VAL SEQRES 10 B 203 ILE GLU ARG LEU SER GLY ARG ARG ILE ASN PRO GLU THR SEQRES 11 B 203 GLY GLU VAL TYR HIS VAL LYS TYR ASN PRO PRO PRO PRO SEQRES 12 B 203 GLY VAL LYS VAL ILE GLN ARG GLU ASP ASP LYS PRO GLU SEQRES 13 B 203 VAL ILE LYS LYS ARG LEU GLU VAL TYR ARG GLU GLN THR SEQRES 14 B 203 ALA PRO LEU ILE GLU TYR TYR LYS LYS LYS GLY ILE LEU SEQRES 15 B 203 ARG ILE ILE ASP ALA SER LYS PRO VAL GLU GLU VAL TYR SEQRES 16 B 203 ARG GLN VAL LEU GLU VAL ILE GLY HET ADP A 301 39 HET ADP A 302 78 HET ADP B 301 39 HET ADP B 302 39 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP 4(C10 H15 N5 O10 P2) FORMUL 7 HOH *797(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLY A 42 1 12 HELIX 3 3 THR A 43 GLY A 56 1 14 HELIX 4 4 PRO A 60 PHE A 72 1 13 HELIX 5 5 THR A 86 LYS A 100 1 15 HELIX 6 6 PRO A 113 GLY A 123 1 11 HELIX 7 7 ARG A 150 ASP A 153 5 4 HELIX 8 8 LYS A 154 THR A 169 1 16 HELIX 9 9 ALA A 170 LYS A 178 1 9 HELIX 10 10 PRO A 190 GLY A 203 1 14 HELIX 11 11 GLY B 12 GLY B 25 1 14 HELIX 12 12 THR B 31 GLY B 42 1 12 HELIX 13 13 THR B 43 GLU B 54 1 12 HELIX 14 14 PRO B 60 PHE B 72 1 13 HELIX 15 15 THR B 86 LYS B 100 1 15 HELIX 16 16 PRO B 113 GLY B 123 1 11 HELIX 17 17 LYS B 154 THR B 169 1 16 HELIX 18 18 PRO B 171 LYS B 178 1 8 HELIX 19 19 PRO B 190 GLY B 203 1 14 SHEET 1 A 5 VAL A 27 SER A 30 0 SHEET 2 A 5 VAL A 78 ASP A 81 1 O ASP A 81 N ILE A 29 SHEET 3 A 5 ILE A 2 LEU A 6 1 N LEU A 3 O PHE A 80 SHEET 4 A 5 HIS A 106 GLU A 111 1 O PHE A 110 N LEU A 6 SHEET 5 A 5 LEU A 182 ASP A 186 1 O ARG A 183 N VAL A 107 SHEET 1 B 2 ARG A 124 ILE A 126 0 SHEET 2 B 2 VAL A 133 HIS A 135 -1 O TYR A 134 N ARG A 125 SHEET 1 C 5 VAL B 27 SER B 30 0 SHEET 2 C 5 VAL B 78 ASP B 81 1 O ILE B 79 N VAL B 27 SHEET 3 C 5 ILE B 2 LEU B 6 1 N LEU B 3 O PHE B 80 SHEET 4 C 5 HIS B 106 GLU B 111 1 O PHE B 110 N LEU B 6 SHEET 5 C 5 LEU B 182 ASP B 186 1 O ILE B 185 N LEU B 109 SHEET 1 D 2 ARG B 124 ILE B 126 0 SHEET 2 D 2 VAL B 133 HIS B 135 -1 O TYR B 134 N ARG B 125 CISPEP 1 PHE A 83 PRO A 84 0 -5.28 CISPEP 2 PHE B 83 PRO B 84 0 -7.48 SITE 1 AC1 22 GLY A 10 ALA A 11 GLY A 12 LYS A 13 SITE 2 AC1 22 GLY A 14 THR A 15 ARG A 120 ARG A 124 SITE 3 AC1 22 VAL A 133 TYR A 134 HIS A 135 TYR A 138 SITE 4 AC1 22 LYS A 189 PRO A 190 VAL A 191 ADP A 302 SITE 5 AC1 22 HOH A 410 HOH A 450 HOH A 562 HOH A 637 SITE 6 AC1 22 HOH A 778 ARG B 55 SITE 1 AC2 22 PRO A 9 THR A 31 GLY A 32 LEU A 35 SITE 2 AC2 22 ARG A 36 MET A 53 GLU A 57 VAL A 59 SITE 3 AC2 22 ILE A 64 GLY A 82 ARG A 85 GLN A 89 SITE 4 AC2 22 ARG A 124 ARG A 150 ARG A 161 ADP A 301 SITE 5 AC2 22 HOH A 406 HOH A 408 HOH A 412 HOH A 434 SITE 6 AC2 22 HOH A 460 HOH A 633 SITE 1 AC3 24 PRO B 9 THR B 31 GLY B 32 LEU B 35 SITE 2 AC3 24 ARG B 36 MET B 53 GLU B 57 VAL B 59 SITE 3 AC3 24 ILE B 64 GLY B 82 ARG B 85 GLN B 89 SITE 4 AC3 24 ARG B 124 ARG B 150 ASP B 152 ARG B 161 SITE 5 AC3 24 ADP B 302 HOH B 402 HOH B 409 HOH B 410 SITE 6 AC3 24 HOH B 416 HOH B 430 HOH B 525 HOH B 589 SITE 1 AC4 20 GLY B 10 ALA B 11 GLY B 12 LYS B 13 SITE 2 AC4 20 GLY B 14 THR B 15 ARG B 120 ARG B 124 SITE 3 AC4 20 TYR B 134 HIS B 135 TYR B 138 LYS B 189 SITE 4 AC4 20 PRO B 190 VAL B 191 ADP B 301 HOH B 421 SITE 5 AC4 20 HOH B 440 HOH B 447 HOH B 496 HOH B 600 CRYST1 66.170 69.560 85.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011711 0.00000