HEADER PROTEIN TRANSPORT/TOXIN 14-MAR-13 4JML TITLE CRYSTAL STRUCTURE OF THE TOLB(P201C)-COLICINE9 TBE PEPTIDE(A33C) TITLE 2 COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOLB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COLICIN-E9; COMPND 8 CHAIN: E; COMPND 9 FRAGMENT: T-DOMAIN, RESIDUES 32-47; COMPND 10 EC: 3.1.-.-; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 536056; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ECDH1ME8569_0700, ECDH1_2895, TOLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562 KEYWDS PROTEIN-PROTEIN INTERACTION, ENGINEERED DISULFIDE, BACTERIOCIN KEYWDS 2 TRANSPORT, PROTEIN TRANSPORT, PROTEIN TRANSPORT-TOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.WOJDYLA,A.KLEIN,C.KLEANTHOUS REVDAT 3 20-SEP-23 4JML 1 REMARK LINK REVDAT 2 26-FEB-20 4JML 1 REMARK SEQADV REVDAT 1 17-JUL-13 4JML 0 JRNL AUTH N.G.HOUSDEN,J.T.HOPPER,N.LUKOYANOVA,D.RODRIGUEZ-LARREA, JRNL AUTH 2 J.A.WOJDYLA,A.KLEIN,R.KAMINSKA,H.BAYLEY,H.R.SAIBIL, JRNL AUTH 3 C.V.ROBINSON,C.KLEANTHOUS JRNL TITL INTRINSICALLY DISORDERED PROTEIN THREADS THROUGH THE JRNL TITL 2 BACTERIAL OUTER-MEMBRANE PORIN OMPF. JRNL REF SCIENCE V. 340 1570 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23812713 JRNL DOI 10.1126/SCIENCE.1237864 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3240 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2981 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4432 ; 1.760 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6861 ; 0.835 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;36.885 ;24.702 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;13.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3853 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : ACCEL FIXED EXIT DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.950 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2IVZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM CALCIUM CHLORIDE, 24% PEG REMARK 280 5000MME, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.04450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.21850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.21850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.04450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 VAL A 23 REMARK 465 ARG A 24 REMARK 465 ILE A 25 REMARK 465 VAL A 26 REMARK 465 ILE A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 VAL A 31 REMARK 465 ASP A 32 REMARK 465 ALA A 45 REMARK 465 GLY A 46 REMARK 465 PRO A 47 REMARK 465 GLY A 48 REMARK 465 LEU A 431 REMARK 465 GLU A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 803 O HOH A 804 1.87 REMARK 500 O HOH A 829 O HOH A 830 1.88 REMARK 500 O HOH A 705 O HOH A 711 1.94 REMARK 500 O HOH A 731 O HOH A 793 2.03 REMARK 500 O HOH A 816 O HOH E 104 2.04 REMARK 500 O HOH A 705 O HOH A 828 2.06 REMARK 500 O HOH E 104 O HOH E 108 2.08 REMARK 500 O HOH A 731 O HOH A 747 2.09 REMARK 500 O HOH A 601 O HOH A 718 2.09 REMARK 500 OH TYR A 190 O HOH A 692 2.13 REMARK 500 NH2 ARG A 63 O HOH A 735 2.13 REMARK 500 O HOH A 839 O HOH A 840 2.17 REMARK 500 O HOH A 705 O HOH A 793 2.17 REMARK 500 O HOH A 601 O HOH A 753 2.17 REMARK 500 O HOH A 647 O HOH A 873 2.18 REMARK 500 O HOH A 745 O HOH A 842 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 201 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 254 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 244 -135.47 64.60 REMARK 500 ASN A 320 -83.59 -104.26 REMARK 500 ALA A 323 99.19 -170.01 REMARK 500 THR A 365 -22.58 -141.18 REMARK 500 ASP A 418 30.20 -88.54 REMARK 500 TRP E 39 -25.51 -149.90 REMARK 500 ASN E 44 53.50 37.13 REMARK 500 ASN E 44 52.36 38.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 336 OD1 REMARK 620 2 HOH A 616 O 81.6 REMARK 620 3 HOH A 631 O 70.9 90.6 REMARK 620 4 HOH A 641 O 127.6 64.8 70.6 REMARK 620 5 HOH A 694 O 90.4 80.0 160.2 119.5 REMARK 620 6 HOH A 723 O 73.6 146.8 101.4 148.3 78.5 REMARK 620 7 HOH A 748 O 149.8 120.0 125.1 82.4 74.4 77.7 REMARK 620 8 HOH A 764 O 107.2 142.5 60.2 82.4 134.7 67.7 69.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IVZ RELATED DB: PDB DBREF 4JML A 23 430 UNP C9R0N0 C9R0N0_ECOD1 23 430 DBREF 4JML E 32 47 UNP P09883 CEA9_ECOLX 32 47 SEQADV 4JML MET A 22 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML CYS A 201 UNP C9R0N0 PRO 201 ENGINEERED MUTATION SEQADV 4JML LEU A 431 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML GLU A 432 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML HIS A 433 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML HIS A 434 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML HIS A 435 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML HIS A 436 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML HIS A 437 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML HIS A 438 UNP C9R0N0 EXPRESSION TAG SEQADV 4JML CYS E 33 UNP P09883 ALA 33 ENGINEERED MUTATION SEQRES 1 A 417 MET VAL ARG ILE VAL ILE ASP SER GLY VAL ASP SER GLY SEQRES 2 A 417 ARG PRO ILE GLY VAL VAL PRO PHE GLN TRP ALA GLY PRO SEQRES 3 A 417 GLY ALA ALA PRO GLU ASP ILE GLY GLY ILE VAL ALA ALA SEQRES 4 A 417 ASP LEU ARG ASN SER GLY LYS PHE ASN PRO LEU ASP ARG SEQRES 5 A 417 ALA ARG LEU PRO GLN GLN PRO GLY SER ALA GLN GLU VAL SEQRES 6 A 417 GLN PRO ALA ALA TRP SER ALA LEU GLY ILE ASP ALA VAL SEQRES 7 A 417 VAL VAL GLY GLN VAL THR PRO ASN PRO ASP GLY SER TYR SEQRES 8 A 417 ASN VAL ALA TYR GLN LEU VAL ASP THR GLY GLY ALA PRO SEQRES 9 A 417 GLY THR VAL LEU ALA GLN ASN SER TYR LYS VAL ASN LYS SEQRES 10 A 417 GLN TRP LEU ARG TYR ALA GLY HIS THR ALA SER ASP GLU SEQRES 11 A 417 VAL PHE GLU LYS LEU THR GLY ILE LYS GLY ALA PHE ARG SEQRES 12 A 417 THR ARG ILE ALA TYR VAL VAL GLN THR ASN GLY GLY GLN SEQRES 13 A 417 PHE PRO TYR GLU LEU ARG VAL SER ASP TYR ASP GLY TYR SEQRES 14 A 417 ASN GLN PHE VAL VAL HIS ARG SER PRO GLN CYS LEU MET SEQRES 15 A 417 SER PRO ALA TRP SER PRO ASP GLY SER LYS LEU ALA TYR SEQRES 16 A 417 VAL THR PHE GLU SER GLY ARG SER ALA LEU VAL ILE GLN SEQRES 17 A 417 THR LEU ALA ASN GLY ALA VAL ARG GLN VAL ALA SER PHE SEQRES 18 A 417 PRO ARG HIS ASN GLY ALA PRO ALA PHE SER PRO ASP GLY SEQRES 19 A 417 SER LYS LEU ALA PHE ALA LEU SER LYS THR GLY SER LEU SEQRES 20 A 417 ASN LEU TYR VAL MET ASP LEU ALA SER GLY GLN ILE ARG SEQRES 21 A 417 GLN VAL THR ASP GLY ARG SER ASN ASN THR GLU PRO THR SEQRES 22 A 417 TRP PHE PRO ASP SER GLN ASN LEU ALA PHE THR SER ASP SEQRES 23 A 417 GLN ALA GLY ARG PRO GLN VAL TYR LYS VAL ASN ILE ASN SEQRES 24 A 417 GLY GLY ALA PRO GLN ARG ILE THR TRP GLU GLY SER GLN SEQRES 25 A 417 ASN GLN ASP ALA ASP VAL SER SER ASP GLY LYS PHE MET SEQRES 26 A 417 VAL MET VAL SER SER ASN GLY GLY GLN GLN HIS ILE ALA SEQRES 27 A 417 LYS GLN ASP LEU ALA THR GLY GLY VAL GLN VAL LEU SER SEQRES 28 A 417 SER THR PHE LEU ASP GLU THR PRO SER LEU ALA PRO ASN SEQRES 29 A 417 GLY THR MET VAL ILE TYR SER SER SER GLN GLY MET GLY SEQRES 30 A 417 SER VAL LEU ASN LEU VAL SER THR ASP GLY ARG PHE LYS SEQRES 31 A 417 ALA ARG LEU PRO ALA THR ASP GLY GLN VAL LYS PHE PRO SEQRES 32 A 417 ALA TRP SER PRO TYR LEU LEU GLU HIS HIS HIS HIS HIS SEQRES 33 A 417 HIS SEQRES 1 E 16 GLY CYS SER ASP GLY SER GLY TRP SER SER GLU ASN ASN SEQRES 2 E 16 PRO TRP GLY HET CA A 501 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *282(H2 O) HELIX 1 1 ASP A 53 SER A 65 1 13 HELIX 2 2 ASP A 72 LEU A 76 5 5 HELIX 3 3 SER A 82 VAL A 86 5 5 HELIX 4 4 GLN A 87 ALA A 93 1 7 HELIX 5 5 ASN A 137 GLN A 139 5 3 HELIX 6 6 TRP A 140 GLY A 158 1 19 HELIX 7 7 SER A 394 SER A 399 5 6 SHEET 1 A 5 PHE A 68 PRO A 70 0 SHEET 2 A 5 ARG A 35 VAL A 39 1 N ARG A 35 O ASN A 69 SHEET 3 A 5 ALA A 98 PRO A 106 1 O VAL A 100 N GLY A 38 SHEET 4 A 5 TYR A 112 ASP A 120 -1 O VAL A 119 N VAL A 99 SHEET 5 A 5 VAL A 128 VAL A 136 -1 O VAL A 136 N TYR A 112 SHEET 1 B 4 PHE A 193 SER A 198 0 SHEET 2 B 4 TYR A 180 ASP A 186 -1 N LEU A 182 O HIS A 196 SHEET 3 B 4 ARG A 166 GLN A 172 -1 N TYR A 169 O ARG A 183 SHEET 4 B 4 GLN A 420 TRP A 426 -1 O GLN A 420 N GLN A 172 SHEET 1 C 4 LEU A 202 TRP A 207 0 SHEET 2 C 4 LYS A 213 THR A 218 -1 O ALA A 215 N ALA A 206 SHEET 3 C 4 ALA A 225 THR A 230 -1 O GLN A 229 N LEU A 214 SHEET 4 C 4 VAL A 236 ALA A 240 -1 O ALA A 240 N LEU A 226 SHEET 1 D 4 ASN A 246 PHE A 251 0 SHEET 2 D 4 LYS A 257 LEU A 262 -1 O ALA A 259 N ALA A 250 SHEET 3 D 4 ASN A 269 ASP A 274 -1 O MET A 273 N LEU A 258 SHEET 4 D 4 ILE A 280 GLN A 282 -1 O ARG A 281 N VAL A 272 SHEET 1 E 4 ASN A 290 TRP A 295 0 SHEET 2 E 4 ASN A 301 SER A 306 -1 O THR A 305 N THR A 291 SHEET 3 E 4 GLN A 313 ASN A 318 -1 O GLN A 313 N SER A 306 SHEET 4 E 4 GLN A 325 ARG A 326 -1 O GLN A 325 N LYS A 316 SHEET 1 F 4 GLN A 333 VAL A 339 0 SHEET 2 F 4 PHE A 345 ASN A 352 -1 O VAL A 349 N GLN A 335 SHEET 3 F 4 GLN A 355 ASP A 362 -1 O ALA A 359 N MET A 348 SHEET 4 F 4 VAL A 368 VAL A 370 -1 O GLN A 369 N LYS A 360 SHEET 1 G 4 GLU A 378 LEU A 382 0 SHEET 2 G 4 MET A 388 SER A 392 -1 O ILE A 390 N SER A 381 SHEET 3 G 4 LEU A 401 SER A 405 -1 O ASN A 402 N TYR A 391 SHEET 4 G 4 LYS A 411 ARG A 413 -1 O ALA A 412 N LEU A 403 SSBOND 1 CYS A 201 CYS E 33 1555 1555 2.12 LINK OD1 ASP A 336 CA CA A 501 1555 1555 2.35 LINK CA CA A 501 O HOH A 616 1555 1555 2.58 LINK CA CA A 501 O HOH A 631 1555 1555 2.60 LINK CA CA A 501 O HOH A 641 1555 1555 2.64 LINK CA CA A 501 O HOH A 694 1555 1555 2.52 LINK CA CA A 501 O HOH A 723 1555 1555 2.53 LINK CA CA A 501 O HOH A 748 1555 1555 2.73 LINK CA CA A 501 O HOH A 764 1555 1555 2.84 SITE 1 AC1 8 ASP A 336 HOH A 616 HOH A 631 HOH A 641 SITE 2 AC1 8 HOH A 694 HOH A 723 HOH A 748 HOH A 764 CRYST1 40.089 81.420 126.437 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007909 0.00000